Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 Gm20498-202ENSMUST00000164386 1043 ntTSL 2 BASIC10.99□□□□□ -0.65
Nkx3-1P97436 U2af1l4-221ENSMUST00000167361 860 ntTSL 2 BASIC10.99□□□□□ -0.65
Nkx3-1P97436 Tmem255b-202ENSMUST00000167505 1219 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
Nkx3-1P97436 Gm6309-201ENSMUST00000174320 1154 ntAPPRIS P1 TSL 5 BASIC10.99□□□□□ -0.65
Nkx3-1P97436 2610016A17Rik-202ENSMUST00000186768 689 ntBASIC10.99□□□□□ -0.65
Nkx3-1P97436 Gm19208-201ENSMUST00000213861 912 ntBASIC10.99□□□□□ -0.65
Nkx3-1P97436 AC153506.3-201ENSMUST00000219287 1029 ntTSL 5 BASIC10.99□□□□□ -0.65
Nkx3-1P97436 Gm8712-201ENSMUST00000221090 701 ntBASIC10.99□□□□□ -0.65
Nkx3-1P97436 AC108416.1-202ENSMUST00000228927 1201 ntBASIC10.99□□□□□ -0.65
Nkx3-1P97436 Rnpepl1-201ENSMUST00000027487 3337 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
Nkx3-1P97436 Pax6-201ENSMUST00000090391 2869 ntAPPRIS P3 TSL 1 (best) BASIC10.99□□□□□ -0.65
Nkx3-1P97436 Prr15l-201ENSMUST00000054311 1342 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
Nkx3-1P97436 Cnppd1-201ENSMUST00000041213 2429 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
Nkx3-1P97436 Gdap1l1-202ENSMUST00000109420 2475 ntAPPRIS P2 TSL 1 (best) BASIC10.99□□□□□ -0.65
Nkx3-1P97436 Gm17089-201ENSMUST00000171098 1394 ntTSL 1 (best) BASIC10.99□□□□□ -0.65
Nkx3-1P97436 Clstn2-202ENSMUST00000162295 4174 ntAPPRIS ALT2 TSL 5 BASIC10.99□□□□□ -0.65
Nkx3-1P97436 Ntn4-201ENSMUST00000020204 3646 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
Nkx3-1P97436 Gm5846-201ENSMUST00000193146 1414 ntBASIC10.99□□□□□ -0.65
Nkx3-1P97436 Gan-201ENSMUST00000064488 2652 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
Nkx3-1P97436 Zfp346-201ENSMUST00000021937 3333 ntAPPRIS P2 TSL 1 (best) BASIC10.99□□□□□ -0.65
Nkx3-1P97436 Rbak-201ENSMUST00000049861 3335 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
Nkx3-1P97436 Tmem254a-204ENSMUST00000185006 2147 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
Nkx3-1P97436 Ttc4-201ENSMUST00000026480 2121 ntAPPRIS P2 TSL 1 (best) BASIC10.99□□□□□ -0.65
Nkx3-1P97436 Map3k12-201ENSMUST00000023812 5182 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
Nkx3-1P97436 Wsb2-202ENSMUST00000111959 1526 ntAPPRIS ALT2 TSL 1 (best) BASIC10.99□□□□□ -0.65
Nkx3-1P97436 Arcn1-201ENSMUST00000034607 4072 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
Nkx3-1P97436 Rsph3b-201ENSMUST00000024572 1614 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
Nkx3-1P97436 D230025D16Rik-201ENSMUST00000034361 2916 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
Nkx3-1P97436 Snx13-201ENSMUST00000048519 6231 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
Nkx3-1P97436 Sh3bp4-201ENSMUST00000066279 4995 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
Nkx3-1P97436 Traf1-202ENSMUST00000113064 2325 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
Nkx3-1P97436 Tufm-202ENSMUST00000106392 1754 ntTSL 2 BASIC10.98□□□□□ -0.65
Nkx3-1P97436 6030458C11Rik-202ENSMUST00000227299 3206 ntBASIC10.98□□□□□ -0.65
Nkx3-1P97436 Mtm1-201ENSMUST00000025391 3286 ntTSL 1 (best) BASIC10.98□□□□□ -0.65
Nkx3-1P97436 B430212C06Rik-205ENSMUST00000145081 2623 ntTSL 1 (best) BASIC10.98□□□□□ -0.65
Nkx3-1P97436 Gm43134-201ENSMUST00000199434 1886 ntBASIC10.98□□□□□ -0.65
Nkx3-1P97436 Ptgir-201ENSMUST00000086101 2725 ntTSL 1 (best) BASIC10.98□□□□□ -0.65
Nkx3-1P97436 C130012C08Rik-201ENSMUST00000194287 3665 ntBASIC10.98□□□□□ -0.65
Nkx3-1P97436 Got1-201ENSMUST00000026196 2058 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
Nkx3-1P97436 Ccdc28b-202ENSMUST00000106035 821 ntTSL 1 (best) BASIC10.98□□□□□ -0.65
Nkx3-1P97436 Cdc26-202ENSMUST00000107459 654 ntAPPRIS P1 TSL 2 BASIC10.98□□□□□ -0.65
Nkx3-1P97436 Prr15l-203ENSMUST00000107633 930 ntAPPRIS P1 TSL 2 BASIC10.98□□□□□ -0.65
Nkx3-1P97436 Gm14921-201ENSMUST00000118643 908 ntBASIC10.98□□□□□ -0.65
Nkx3-1P97436 Gm4909-201ENSMUST00000118749 794 ntBASIC10.98□□□□□ -0.65
Nkx3-1P97436 Zfp629-204ENSMUST00000128731 823 ntTSL 3 BASIC10.98□□□□□ -0.65
Nkx3-1P97436 Endov-204ENSMUST00000129327 1184 ntTSL 5 BASIC10.98□□□□□ -0.65
Nkx3-1P97436 Gm15477-201ENSMUST00000140578 2130 ntTSL 1 (best) BASIC10.98□□□□□ -0.65
Nkx3-1P97436 Ndufa2-201ENSMUST00000014438 572 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
Nkx3-1P97436 Spata3-211ENSMUST00000159876 760 ntAPPRIS ALT2 TSL 5 BASIC10.98□□□□□ -0.65
Nkx3-1P97436 Gm17111-201ENSMUST00000169981 411 ntTSL 3 BASIC10.98□□□□□ -0.65
Nkx3-1P97436 Mir3547-201ENSMUST00000175461 88 ntBASIC10.98□□□□□ -0.65
Nkx3-1P97436 Gm8885-201ENSMUST00000189382 598 ntBASIC10.98□□□□□ -0.65
Nkx3-1P97436 Gm37201-201ENSMUST00000191845 523 ntBASIC10.98□□□□□ -0.65
Nkx3-1P97436 Gm42800-201ENSMUST00000202494 733 ntTSL 5 BASIC10.98□□□□□ -0.65
Nkx3-1P97436 4930479H17Rik-201ENSMUST00000208824 292 ntTSL 1 (best) BASIC10.98□□□□□ -0.65
Nkx3-1P97436 4933421D24Rik-201ENSMUST00000209302 1286 ntTSL 1 (best) BASIC10.98□□□□□ -0.65
Nkx3-1P97436 Gm32468-201ENSMUST00000214199 1040 ntTSL 5 BASIC10.98□□□□□ -0.65
Nkx3-1P97436 AC158605.1-202ENSMUST00000217860 540 ntTSL 2 BASIC10.98□□□□□ -0.65
Nkx3-1P97436 Nppc-201ENSMUST00000027449 1042 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
Nkx3-1P97436 Prss34-201ENSMUST00000037453 1216 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
Nkx3-1P97436 Mir339-201ENSMUST00000083659 96 ntBASIC10.98□□□□□ -0.65
Nkx3-1P97436 Nme8-202ENSMUST00000091763 2122 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
Nkx3-1P97436 Crry-ps-201ENSMUST00000079090 1309 ntBASIC10.98□□□□□ -0.65
Nkx3-1P97436 Krba1-203ENSMUST00000114571 6695 ntTSL 1 (best) BASIC10.98□□□□□ -0.65
Nkx3-1P97436 Mpzl2-201ENSMUST00000034600 3107 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
Nkx3-1P97436 Mixl1-201ENSMUST00000027778 2294 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
Nkx3-1P97436 Chchd3-202ENSMUST00000115091 1363 ntTSL 1 (best) BASIC10.98□□□□□ -0.65
Nkx3-1P97436 Cnmd-203ENSMUST00000165835 1362 ntAPPRIS ALT2 TSL 1 (best) BASIC10.98□□□□□ -0.65
Nkx3-1P97436 Zyx-201ENSMUST00000070635 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC10.98□□□□□ -0.65
Nkx3-1P97436 Gm30725-201ENSMUST00000195170 1419 ntTSL 1 (best) BASIC10.98□□□□□ -0.65
Nkx3-1P97436 Actrt2-201ENSMUST00000060062 1435 ntAPPRIS P1 BASIC10.98□□□□□ -0.65
Nkx3-1P97436 Adgrg3-201ENSMUST00000051259 2439 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
Nkx3-1P97436 Prok2-203ENSMUST00000101120 1450 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
Nkx3-1P97436 Dmac2-201ENSMUST00000077338 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC10.98□□□□□ -0.65
Nkx3-1P97436 Tssk5-201ENSMUST00000071119 1518 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
Nkx3-1P97436 Chp1-201ENSMUST00000014221 2609 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
Nkx3-1P97436 Tbx3-203ENSMUST00000121021 4777 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
Nkx3-1P97436 Hmga1-203ENSMUST00000117600 1635 ntAPPRIS P3 TSL 1 (best) BASIC10.98□□□□□ -0.65
Nkx3-1P97436 Plcd1-203ENSMUST00000214470 2706 ntTSL 1 (best) BASIC10.98□□□□□ -0.65
Nkx3-1P97436 Cad-201ENSMUST00000013773 7137 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
Nkx3-1P97436 Cyp4f17-201ENSMUST00000165999 1693 ntAPPRIS P1 TSL 5 BASIC10.98□□□□□ -0.65
Nkx3-1P97436 Rasd2-202ENSMUST00000139848 2810 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
Nkx3-1P97436 Ttbk2-203ENSMUST00000085840 11152 ntAPPRIS P1 TSL 5 BASIC10.98□□□□□ -0.65
Nkx3-1P97436 Dctn2-201ENSMUST00000026479 1784 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
Nkx3-1P97436 Gm8206-201ENSMUST00000164139 1956 ntTSL 5 BASIC10.97□□□□□ -0.65
Nkx3-1P97436 Bbof1-201ENSMUST00000081828 2187 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
Nkx3-1P97436 Mob1b-201ENSMUST00000006424 2705 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
Nkx3-1P97436 Cacng3-201ENSMUST00000084615 2777 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
Nkx3-1P97436 2900097C17Rik-202ENSMUST00000192863 4915 ntBASIC10.97□□□□□ -0.65
Nkx3-1P97436 Opa3-201ENSMUST00000063976 3366 ntAPPRIS P2 TSL 1 (best) BASIC10.97□□□□□ -0.65
Nkx3-1P97436 Radil-204ENSMUST00000110785 3708 ntAPPRIS ALT2 TSL 1 (best) BASIC10.97□□□□□ -0.65
Nkx3-1P97436 Myl4-202ENSMUST00000106956 900 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
Nkx3-1P97436 Styxl1-205ENSMUST00000111164 1243 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
Nkx3-1P97436 Mymx-201ENSMUST00000113529 442 ntAPPRIS ALT2 TSL 2 BASIC10.97□□□□□ -0.65
Nkx3-1P97436 Gm13736-201ENSMUST00000119272 253 ntBASIC10.97□□□□□ -0.65
Nkx3-1P97436 Gm4760-201ENSMUST00000119663 1030 ntBASIC10.97□□□□□ -0.65
Nkx3-1P97436 Dnajc25-204ENSMUST00000152199 1141 ntTSL 5 BASIC10.97□□□□□ -0.65
Nkx3-1P97436 Rps19-ps11-201ENSMUST00000160308 433 ntBASIC10.97□□□□□ -0.65
Nkx3-1P97436 Arf4os-201ENSMUST00000166902 566 ntTSL 1 (best) BASIC10.97□□□□□ -0.65
Nkx3-1P97436 4833427G06Rik-201ENSMUST00000170947 973 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
Retrieved 100 of 76,532 protein–RNA pairs in 28 ms