Protein–RNA interactions for Protein: P11416

Rara, Retinoic acid receptor alpha, mousemouse

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RaraP11416 Gm20652-201ENSMUST00000177314 383 ntTSL 2 BASIC13.73□□□□□ -0.21
RaraP11416 Trp53tg5-201ENSMUST00000017864 934 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
RaraP11416 1700029B24Rik-201ENSMUST00000194040 497 ntBASIC13.73□□□□□ -0.21
RaraP11416 Gm37497-201ENSMUST00000195830 798 ntBASIC13.73□□□□□ -0.21
RaraP11416 Gm44772-201ENSMUST00000207623 1191 ntBASIC13.73□□□□□ -0.21
RaraP11416 AC155237.1-201ENSMUST00000226196 1279 ntBASIC13.73□□□□□ -0.21
RaraP11416 Msgn1-201ENSMUST00000049877 613 ntAPPRIS P1 BASIC13.73□□□□□ -0.21
RaraP11416 Gm10012-201ENSMUST00000078252 192 ntBASIC13.73□□□□□ -0.21
RaraP11416 Arhgef17-201ENSMUST00000107032 10190 ntAPPRIS P2 TSL 5 BASIC13.73□□□□□ -0.21
RaraP11416 Ugt1a2-201ENSMUST00000049289 2211 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
RaraP11416 Tcf12-218ENSMUST00000184783 3489 ntAPPRIS P3 TSL 5 BASIC13.73□□□□□ -0.21
RaraP11416 Cerk-203ENSMUST00000156546 2162 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
RaraP11416 Vcl-201ENSMUST00000022369 5267 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
RaraP11416 Lig3-202ENSMUST00000080461 3056 ntTSL 5 BASIC13.73□□□□□ -0.21
RaraP11416 Ap5b1-201ENSMUST00000096318 3092 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
RaraP11416 Ldha-214ENSMUST00000210815 1535 ntTSL 5 BASIC13.73□□□□□ -0.21
RaraP11416 Tmem269-202ENSMUST00000212054 1504 ntAPPRIS P2 TSL 1 (best) BASIC13.73□□□□□ -0.21
RaraP11416 Gck-203ENSMUST00000109823 2361 ntTSL 5 BASIC13.73□□□□□ -0.21
RaraP11416 1110032A03Rik-201ENSMUST00000042468 2082 ntAPPRIS P3 TSL 1 (best) BASIC13.73□□□□□ -0.21
RaraP11416 Rfx7-203ENSMUST00000183372 1457 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
RaraP11416 Sncaip-209ENSMUST00000179625 2568 ntTSL 5 BASIC13.73□□□□□ -0.21
RaraP11416 1700001L05Rik-201ENSMUST00000100370 2270 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
RaraP11416 Ablim1-202ENSMUST00000099294 6232 ntAPPRIS ALT2 TSL 5 BASIC13.72□□□□□ -0.21
RaraP11416 Adi1-201ENSMUST00000020957 1652 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
RaraP11416 Ptger4-202ENSMUST00000120563 3312 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
RaraP11416 Zrsr2-201ENSMUST00000090840 3867 ntTSL 2 BASIC13.72□□□□□ -0.21
RaraP11416 Tmem230-203ENSMUST00000110164 2957 ntAPPRIS P1 TSL 2 BASIC13.72□□□□□ -0.21
RaraP11416 Ptpn2-203ENSMUST00000122412 2667 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
RaraP11416 Zfp12-203ENSMUST00000077485 4294 ntAPPRIS P3 TSL 1 (best) BASIC13.72□□□□□ -0.21
RaraP11416 Api5-201ENSMUST00000028617 3736 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
RaraP11416 Fitm2-201ENSMUST00000109418 3967 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
RaraP11416 Pxdn-202ENSMUST00000122328 6614 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
RaraP11416 Gm43677-201ENSMUST00000198098 2378 ntBASIC13.72□□□□□ -0.21
RaraP11416 Ak4-202ENSMUST00000106945 4175 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
RaraP11416 Avpr2-201ENSMUST00000033765 1812 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
RaraP11416 Ncor2-205ENSMUST00000111398 8808 ntAPPRIS ALT2 TSL 5 BASIC13.72□□□□□ -0.21
RaraP11416 Gm12203-201ENSMUST00000118235 598 ntBASIC13.72□□□□□ -0.21
RaraP11416 Gm12209-201ENSMUST00000120089 596 ntBASIC13.72□□□□□ -0.21
RaraP11416 Gm13394-201ENSMUST00000121658 1000 ntBASIC13.72□□□□□ -0.21
RaraP11416 Gm14760-201ENSMUST00000121831 999 ntBASIC13.72□□□□□ -0.21
RaraP11416 2410080I02Rik-201ENSMUST00000142712 414 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
RaraP11416 Rsf1os2-203ENSMUST00000155074 998 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
RaraP11416 Gm9630-201ENSMUST00000178304 885 ntBASIC13.72□□□□□ -0.21
RaraP11416 Gm5896-201ENSMUST00000189662 1024 ntBASIC13.72□□□□□ -0.21
RaraP11416 Poc1a-205ENSMUST00000191434 1242 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
RaraP11416 Gm45233-201ENSMUST00000203633 898 ntAPPRIS P5 TSL 5 BASIC13.72□□□□□ -0.21
RaraP11416 Gm35368-201ENSMUST00000209554 1244 ntTSL 5 BASIC13.72□□□□□ -0.21
RaraP11416 Timm10-201ENSMUST00000028470 690 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
RaraP11416 Olfr983-201ENSMUST00000050996 1050 ntTSL 2 BASIC13.72□□□□□ -0.21
RaraP11416 1700029I15Rik-201ENSMUST00000054316 364 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
RaraP11416 Tnnt3-201ENSMUST00000074187 1007 ntAPPRIS P3 TSL 1 (best) BASIC13.72□□□□□ -0.21
RaraP11416 Slc14a1-203ENSMUST00000160639 2047 ntAPPRIS P3 TSL 1 (best) BASIC13.72□□□□□ -0.21
RaraP11416 Itfg2-203ENSMUST00000142615 3191 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
RaraP11416 Rnf223-201ENSMUST00000209248 2908 ntAPPRIS P1 BASIC13.72□□□□□ -0.21
RaraP11416 1520401A03Rik-205ENSMUST00000201734 2660 ntAPPRIS P5 TSL 5 BASIC13.72□□□□□ -0.21
RaraP11416 Tapbp-201ENSMUST00000025161 2894 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
RaraP11416 Rita1-207ENSMUST00000177800 1668 ntAPPRIS P1 TSL 5 BASIC13.72□□□□□ -0.21
RaraP11416 Gm5053-201ENSMUST00000208361 1678 ntBASIC13.72□□□□□ -0.21
RaraP11416 Phyh-201ENSMUST00000027975 1438 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
RaraP11416 Psmd9-201ENSMUST00000100729 2597 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
RaraP11416 Dcaf7-201ENSMUST00000058438 5750 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
RaraP11416 Olfr763-201ENSMUST00000077460 2523 ntAPPRIS P1 BASIC13.71□□□□□ -0.21
RaraP11416 Rnf113a2-201ENSMUST00000183146 1383 ntAPPRIS P1 BASIC13.71□□□□□ -0.21
RaraP11416 Bckdhb-205ENSMUST00000190166 1398 ntAPPRIS P3 TSL 1 (best) BASIC13.71□□□□□ -0.21
RaraP11416 A630014C17Rik-201ENSMUST00000150973 2984 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
RaraP11416 Trim23-201ENSMUST00000022225 3416 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
RaraP11416 Mrgprg-201ENSMUST00000058092 1821 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
RaraP11416 Rftn2-202ENSMUST00000114428 2012 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
RaraP11416 Spata33-208ENSMUST00000212892 2940 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
RaraP11416 Chchd3-201ENSMUST00000066379 1550 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
RaraP11416 Igtp-202ENSMUST00000094169 1767 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
RaraP11416 Tmem56-204ENSMUST00000135818 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.21
RaraP11416 Lcmt2-202ENSMUST00000110674 3056 ntAPPRIS P1 BASIC13.71□□□□□ -0.21
RaraP11416 Gm13722-201ENSMUST00000117964 3066 ntBASIC13.71□□□□□ -0.21
RaraP11416 Atp6v1b1-201ENSMUST00000006431 1999 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
RaraP11416 Gm21964-203ENSMUST00000219454 1513 ntAPPRIS P5 TSL 5 BASIC13.71□□□□□ -0.21
RaraP11416 Mir692-1-201ENSMUST00000102263 109 ntBASIC13.71□□□□□ -0.21
RaraP11416 1700037H04Rik-202ENSMUST00000103188 1241 ntAPPRIS P3 TSL 1 (best) BASIC13.71□□□□□ -0.21
RaraP11416 Faap20-202ENSMUST00000105627 710 ntAPPRIS ALT2 TSL 2 BASIC13.71□□□□□ -0.21
RaraP11416 Dgcr2-203ENSMUST00000117082 2987 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
RaraP11416 Sumo2-204ENSMUST00000118155 884 ntTSL 2 BASIC13.71□□□□□ -0.21
RaraP11416 Rpl19-ps12-201ENSMUST00000121251 591 ntBASIC13.71□□□□□ -0.21
RaraP11416 Hypk-204ENSMUST00000126764 961 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
RaraP11416 Cpne8-201ENSMUST00000014777 697 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
RaraP11416 Gm23363-201ENSMUST00000175024 79 ntBASIC13.71□□□□□ -0.21
RaraP11416 1700072B07Rik-201ENSMUST00000191141 445 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
RaraP11416 Gm37042-201ENSMUST00000193816 581 ntBASIC13.71□□□□□ -0.21
RaraP11416 CT030657.3-201ENSMUST00000222707 1200 ntBASIC13.71□□□□□ -0.21
RaraP11416 Nupr1-201ENSMUST00000032961 829 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
RaraP11416 Pts-201ENSMUST00000034570 1046 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
RaraP11416 Olfr1346-201ENSMUST00000056144 1051 ntAPPRIS P1 BASIC13.71□□□□□ -0.21
RaraP11416 Otud6a-201ENSMUST00000060241 873 ntAPPRIS P1 BASIC13.71□□□□□ -0.21
RaraP11416 Vmn1r213-201ENSMUST00000076897 1155 ntAPPRIS P2 BASIC13.71□□□□□ -0.21
RaraP11416 Gm17080-201ENSMUST00000087588 811 ntTSL 5 BASIC13.71□□□□□ -0.21
RaraP11416 Smarcd2-203ENSMUST00000106843 2548 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
RaraP11416 Fnbp1-203ENSMUST00000100207 1680 ntTSL 5 BASIC13.71□□□□□ -0.21
RaraP11416 5430419D17Rik-201ENSMUST00000050586 2928 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
RaraP11416 Nfe2l1-210ENSMUST00000167110 3547 ntAPPRIS ALT2 TSL 2 BASIC13.71□□□□□ -0.21
RaraP11416 Pcdh8-204ENSMUST00000195355 3704 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.21
RaraP11416 Asph-207ENSMUST00000108333 2652 ntTSL 5 BASIC13.71□□□□□ -0.22
Retrieved 100 of 76,532 protein–RNA pairs in 68.1 ms