Protein–RNA interactions for Protein: Q9EQM3

Nkx2-4, Homeobox protein Nkx-2.4, mousemouse

Predictions only

Length 354 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx2-4Q9EQM3 Fgfr3-210ENSMUST00000169212 4245 ntAPPRIS P4 TSL 1 (best) BASIC13.02□□□□□ -0.33
Nkx2-4Q9EQM3 Stx18-203ENSMUST00000114126 3002 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Nkx2-4Q9EQM3 Srsf10-204ENSMUST00000105853 3058 ntAPPRIS P3 TSL 1 (best) BASIC13.02□□□□□ -0.33
Nkx2-4Q9EQM3 Trim32-201ENSMUST00000050850 3194 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Nkx2-4Q9EQM3 Spag1-202ENSMUST00000171205 3219 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Nkx2-4Q9EQM3 Gbe1-207ENSMUST00000171132 3303 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Nkx2-4Q9EQM3 AW209491-202ENSMUST00000178289 2035 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Nkx2-4Q9EQM3 Mtss1-201ENSMUST00000080371 4938 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Nkx2-4Q9EQM3 Tmem254a-204ENSMUST00000185006 2147 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Nkx2-4Q9EQM3 Heg1-205ENSMUST00000152782 8161 ntAPPRIS ALT2 TSL 5 BASIC13.01□□□□□ -0.33
Nkx2-4Q9EQM3 Prr33-201ENSMUST00000054910 2251 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Nkx2-4Q9EQM3 Dnajc6-202ENSMUST00000094953 5322 ntAPPRIS P3 TSL 1 (best) BASIC13.01□□□□□ -0.33
Nkx2-4Q9EQM3 Enpp5-203ENSMUST00000154166 2490 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Nkx2-4Q9EQM3 Rbm11-203ENSMUST00000114253 2699 ntAPPRIS P2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Nkx2-4Q9EQM3 Tbc1d4-209ENSMUST00000161991 6483 ntAPPRIS P2 TSL 5 BASIC13.01□□□□□ -0.33
Nkx2-4Q9EQM3 Bag6-202ENSMUST00000166426 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Nkx2-4Q9EQM3 Gm22133-201ENSMUST00000102082 109 ntBASIC13.01□□□□□ -0.33
Nkx2-4Q9EQM3 Gm25880-201ENSMUST00000104331 132 ntBASIC13.01□□□□□ -0.33
Nkx2-4Q9EQM3 Fthl17d-201ENSMUST00000105004 856 ntAPPRIS P1 BASIC13.01□□□□□ -0.33
Nkx2-4Q9EQM3 Gm12196-201ENSMUST00000120954 262 ntBASIC13.01□□□□□ -0.33
Nkx2-4Q9EQM3 Gm13073-201ENSMUST00000134059 486 ntTSL 3 BASIC13.01□□□□□ -0.33
Nkx2-4Q9EQM3 Sh2d6-203ENSMUST00000159877 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Nkx2-4Q9EQM3 Sh2d6-206ENSMUST00000162561 1251 ntAPPRIS P5 TSL 1 (best) BASIC13.01□□□□□ -0.33
Nkx2-4Q9EQM3 Mocs2-205ENSMUST00000165022 962 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Nkx2-4Q9EQM3 Gm8494-201ENSMUST00000178171 1233 ntBASIC13.01□□□□□ -0.33
Nkx2-4Q9EQM3 Mir7677-201ENSMUST00000184226 67 ntBASIC13.01□□□□□ -0.33
Nkx2-4Q9EQM3 Creb1-209ENSMUST00000190348 1260 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Nkx2-4Q9EQM3 A430050A11Rik-201ENSMUST00000195348 646 ntBASIC13.01□□□□□ -0.33
Nkx2-4Q9EQM3 Gm19166-201ENSMUST00000196041 1063 ntBASIC13.01□□□□□ -0.33
Nkx2-4Q9EQM3 Nras-208ENSMUST00000200069 831 ntAPPRIS P1 TSL 2 BASIC13.01□□□□□ -0.33
Nkx2-4Q9EQM3 Gm4797-201ENSMUST00000219075 1283 ntBASIC13.01□□□□□ -0.33
Nkx2-4Q9EQM3 Snu13-202ENSMUST00000080622 1283 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Nkx2-4Q9EQM3 Mir219a-1-201ENSMUST00000083621 110 ntBASIC13.01□□□□□ -0.33
Nkx2-4Q9EQM3 Gm5965-201ENSMUST00000009191 588 ntAPPRIS P1 TSL 5 BASIC13.01□□□□□ -0.33
Nkx2-4Q9EQM3 Rdh16f2-201ENSMUST00000092058 1265 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Nkx2-4Q9EQM3 Inpp5e-205ENSMUST00000145701 4147 ntAPPRIS P3 TSL 1 (best) BASIC13.01□□□□□ -0.33
Nkx2-4Q9EQM3 AC123619.2-202ENSMUST00000225097 1568 ntBASIC13.01□□□□□ -0.33
Nkx2-4Q9EQM3 Sh3glb2-202ENSMUST00000100215 1749 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Nkx2-4Q9EQM3 Ces1h-201ENSMUST00000145041 1870 ntAPPRIS P1 TSL 5 BASIC13.01□□□□□ -0.33
Nkx2-4Q9EQM3 Ppp1r18-204ENSMUST00000144382 2536 ntAPPRIS P2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Nkx2-4Q9EQM3 Sptlc1-201ENSMUST00000021920 2606 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Nkx2-4Q9EQM3 Slc44a3-201ENSMUST00000039197 2620 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Nkx2-4Q9EQM3 Dnm2-201ENSMUST00000072362 3502 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Nkx2-4Q9EQM3 Cep85-201ENSMUST00000040271 3893 ntAPPRIS P2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Nkx2-4Q9EQM3 Sin3a-208ENSMUST00000168678 5206 ntAPPRIS P3 TSL 1 (best) BASIC13.01□□□□□ -0.33
Nkx2-4Q9EQM3 Celf1-214ENSMUST00000177642 7806 ntAPPRIS ALT1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Nkx2-4Q9EQM3 Zfp319-201ENSMUST00000057717 7232 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Nkx2-4Q9EQM3 Yeats2-201ENSMUST00000090052 5997 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
Nkx2-4Q9EQM3 Abtb2-201ENSMUST00000076212 4558 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Nkx2-4Q9EQM3 Mfrp-202ENSMUST00000161381 4254 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
Nkx2-4Q9EQM3 Atp13a2-201ENSMUST00000037055 3956 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
Nkx2-4Q9EQM3 Hps1-204ENSMUST00000160455 2952 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
Nkx2-4Q9EQM3 Il12rb1-205ENSMUST00000212657 2741 ntAPPRIS ALT2 TSL 5 BASIC13□□□□□ -0.33
Nkx2-4Q9EQM3 Mslnl-201ENSMUST00000047098 2628 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Nkx2-4Q9EQM3 Gm2420-202ENSMUST00000202224 2249 ntBASIC13□□□□□ -0.33
Nkx2-4Q9EQM3 Gm9129-201ENSMUST00000218173 1689 ntBASIC13□□□□□ -0.33
Nkx2-4Q9EQM3 Gnrhr-202ENSMUST00000094654 1475 ntTSL 1 (best) BASIC13□□□□□ -0.33
Nkx2-4Q9EQM3 Cdc42se1-204ENSMUST00000107201 907 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Nkx2-4Q9EQM3 Pmp22-202ENSMUST00000108700 733 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Nkx2-4Q9EQM3 Tcf7l2-205ENSMUST00000111651 1127 ntTSL 1 (best) BASIC13□□□□□ -0.33
Nkx2-4Q9EQM3 Spx-202ENSMUST00000126521 357 ntAPPRIS P2 TSL 5 BASIC13□□□□□ -0.33
Nkx2-4Q9EQM3 Gm23153-201ENSMUST00000175323 313 ntBASIC13□□□□□ -0.33
Nkx2-4Q9EQM3 Gm5733-201ENSMUST00000190232 939 ntBASIC13□□□□□ -0.33
Nkx2-4Q9EQM3 D3Ertd751e-215ENSMUST00000195882 680 ntAPPRIS P3 TSL 2 BASIC13□□□□□ -0.33
Nkx2-4Q9EQM3 4933408A14Rik-201ENSMUST00000199037 729 ntTSL 1 (best) BASIC13□□□□□ -0.33
Nkx2-4Q9EQM3 Gm31479-201ENSMUST00000209936 522 ntTSL 3 BASIC13□□□□□ -0.33
Nkx2-4Q9EQM3 Gm45398-201ENSMUST00000210561 165 ntBASIC13□□□□□ -0.33
Nkx2-4Q9EQM3 Gm40709-203ENSMUST00000219695 973 ntTSL 5 BASIC13□□□□□ -0.33
Nkx2-4Q9EQM3 Gm40983-201ENSMUST00000222524 502 ntTSL 3 BASIC13□□□□□ -0.33
Nkx2-4Q9EQM3 Timp2-201ENSMUST00000017610 3709 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Nkx2-4Q9EQM3 Nek7-201ENSMUST00000027642 3737 ntTSL 1 (best) BASIC13□□□□□ -0.33
Nkx2-4Q9EQM3 Osbpl8-201ENSMUST00000095310 3622 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
Nkx2-4Q9EQM3 Ube3b-201ENSMUST00000074002 5194 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Nkx2-4Q9EQM3 Nfatc1-202ENSMUST00000078049 4607 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
Nkx2-4Q9EQM3 Gk5-202ENSMUST00000122383 4455 ntAPPRIS P2 TSL 1 (best) BASIC13□□□□□ -0.33
Nkx2-4Q9EQM3 Clcnkb-202ENSMUST00000105788 2490 ntTSL 1 (best) BASIC13□□□□□ -0.33
Nkx2-4Q9EQM3 Nrf1-209ENSMUST00000115209 2406 ntTSL 5 BASIC13□□□□□ -0.33
Nkx2-4Q9EQM3 Ace-202ENSMUST00000001964 2418 ntTSL 1 (best) BASIC13□□□□□ -0.33
Nkx2-4Q9EQM3 Palld-203ENSMUST00000121493 5445 ntTSL 1 (best) BASIC13□□□□□ -0.33
Nkx2-4Q9EQM3 Rnf152-201ENSMUST00000058688 8492 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Nkx2-4Q9EQM3 Cdk5rap3-201ENSMUST00000103152 2250 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Nkx2-4Q9EQM3 Agap1-201ENSMUST00000027521 11921 ntAPPRIS P4 TSL 1 (best) BASIC13□□□□□ -0.33
Nkx2-4Q9EQM3 Myo18a-221ENSMUST00000167856 6132 ntTSL 5 BASIC13□□□□□ -0.33
Nkx2-4Q9EQM3 Samd14-201ENSMUST00000055947 3318 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Nkx2-4Q9EQM3 Klhl12-203ENSMUST00000116528 3277 ntAPPRIS P1 TSL 5 BASIC13□□□□□ -0.33
Nkx2-4Q9EQM3 Nptn-206ENSMUST00000176557 1898 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Nkx2-4Q9EQM3 Mau2-202ENSMUST00000168013 5323 ntAPPRIS ALT2 TSL 5 BASIC12.99□□□□□ -0.33
Nkx2-4Q9EQM3 Spcs2-201ENSMUST00000036274 2909 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Nkx2-4Q9EQM3 Dab2ip-206ENSMUST00000112987 6287 ntAPPRIS ALT2 TSL 5 BASIC12.99□□□□□ -0.33
Nkx2-4Q9EQM3 Chst10-205ENSMUST00000193441 4999 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Nkx2-4Q9EQM3 AC167013.2-201ENSMUST00000228520 2684 ntBASIC12.99□□□□□ -0.33
Nkx2-4Q9EQM3 Gsn-201ENSMUST00000028239 2653 ntAPPRIS P3 TSL 1 (best) BASIC12.99□□□□□ -0.33
Nkx2-4Q9EQM3 Gm12915-201ENSMUST00000131381 1499 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Nkx2-4Q9EQM3 Gucy1a2-201ENSMUST00000115733 2243 ntAPPRIS P1 TSL 2 BASIC12.99□□□□□ -0.33
Nkx2-4Q9EQM3 Evi5l-203ENSMUST00000176149 3938 ntAPPRIS ALT2 TSL 5 BASIC12.99□□□□□ -0.33
Nkx2-4Q9EQM3 Stip1-201ENSMUST00000025918 2173 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Nkx2-4Q9EQM3 Rwdd3-205ENSMUST00000106467 1158 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Nkx2-4Q9EQM3 Tprkb-203ENSMUST00000113751 692 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Nkx2-4Q9EQM3 Yipf6-202ENSMUST00000113811 930 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Nkx2-4Q9EQM3 Gm11989-201ENSMUST00000117240 672 ntBASIC12.99□□□□□ -0.33
Retrieved 100 of 76,532 protein–RNA pairs in 41.5 ms