Protein–RNA interactions for Protein: Q99NB9

Sf3b1, Splicing factor 3B subunit 1, mousemouse

Known RBP Predictions only

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sf3b1Q99NB9 Gm22042-201ENSMUST00000082989 165 ntBASIC13.52□□□□□ -0.25
Sf3b1Q99NB9 Gm26232-201ENSMUST00000083360 166 ntBASIC13.52□□□□□ -0.25
Sf3b1Q99NB9 Gm24136-201ENSMUST00000083374 165 ntBASIC13.52□□□□□ -0.25
Sf3b1Q99NB9 Mir339-201ENSMUST00000083659 96 ntBASIC13.52□□□□□ -0.25
Sf3b1Q99NB9 Rnu1b6-201ENSMUST00000083839 166 ntBASIC13.52□□□□□ -0.25
Sf3b1Q99NB9 Gm26110-201ENSMUST00000083971 165 ntBASIC13.52□□□□□ -0.25
Sf3b1Q99NB9 Adh6a-202ENSMUST00000106247 1341 ntAPPRIS P2 TSL 1 (best) BASIC13.52□□□□□ -0.25
Sf3b1Q99NB9 Tsta3-201ENSMUST00000023231 1311 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Sf3b1Q99NB9 Klhl26-203ENSMUST00000209415 2919 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
Sf3b1Q99NB9 Senp5-201ENSMUST00000023457 3498 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Sf3b1Q99NB9 Ptgr2-208ENSMUST00000147363 1869 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
Sf3b1Q99NB9 Nmral1-204ENSMUST00000120056 2440 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Sf3b1Q99NB9 Eme1-201ENSMUST00000039949 2444 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Sf3b1Q99NB9 Dph3-202ENSMUST00000067955 2953 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Sf3b1Q99NB9 Serpinb2-202ENSMUST00000064916 1996 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Sf3b1Q99NB9 Myh7-201ENSMUST00000102803 6135 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Sf3b1Q99NB9 Dnajb4-201ENSMUST00000029669 1497 ntAPPRIS P1 TSL 5 BASIC13.52□□□□□ -0.25
Sf3b1Q99NB9 B930092H01Rik-201ENSMUST00000213377 2678 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
Sf3b1Q99NB9 Tgm1-203ENSMUST00000178034 2730 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Sf3b1Q99NB9 Mrpl50-201ENSMUST00000057829 2114 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Sf3b1Q99NB9 Nfatc2ip-201ENSMUST00000075671 3388 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Sf3b1Q99NB9 Ephb1-202ENSMUST00000085169 4101 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
Sf3b1Q99NB9 Kdm3a-214ENSMUST00000207023 4753 ntAPPRIS P1 TSL 5 BASIC13.52□□□□□ -0.25
Sf3b1Q99NB9 2310007B03Rik-201ENSMUST00000043718 2299 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Sf3b1Q99NB9 Gm43666-201ENSMUST00000197116 2989 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
Sf3b1Q99NB9 Ntrk2-204ENSMUST00000224259 3049 ntBASIC13.51□□□□□ -0.25
Sf3b1Q99NB9 Scara5-201ENSMUST00000022610 3794 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Sf3b1Q99NB9 Trpv4-202ENSMUST00000112217 2436 ntTSL 5 BASIC13.51□□□□□ -0.25
Sf3b1Q99NB9 Psmd1-201ENSMUST00000027432 3112 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Sf3b1Q99NB9 Slc25a5-ps-202ENSMUST00000223716 1786 ntBASIC13.51□□□□□ -0.25
Sf3b1Q99NB9 Taf1c-201ENSMUST00000093099 3236 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Sf3b1Q99NB9 Myo18a-221ENSMUST00000167856 6132 ntTSL 5 BASIC13.51□□□□□ -0.25
Sf3b1Q99NB9 Mfsd14b-201ENSMUST00000054730 3251 ntAPPRIS P1 TSL 5 BASIC13.51□□□□□ -0.25
Sf3b1Q99NB9 Gm14703-201ENSMUST00000145894 1820 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
Sf3b1Q99NB9 Klhl8-203ENSMUST00000112815 2898 ntTSL 5 BASIC13.51□□□□□ -0.25
Sf3b1Q99NB9 5930412G12Rik-203ENSMUST00000134673 2087 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
Sf3b1Q99NB9 Stpg3-202ENSMUST00000114363 1234 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
Sf3b1Q99NB9 Gm12058-201ENSMUST00000118614 437 ntBASIC13.51□□□□□ -0.25
Sf3b1Q99NB9 Gm11290-201ENSMUST00000124833 396 ntTSL 3 BASIC13.51□□□□□ -0.25
Sf3b1Q99NB9 Gm14809-201ENSMUST00000152025 695 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
Sf3b1Q99NB9 Cabp2-202ENSMUST00000159556 781 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
Sf3b1Q99NB9 Nme9-202ENSMUST00000163199 1196 ntAPPRIS P1 TSL 5 BASIC13.51□□□□□ -0.25
Sf3b1Q99NB9 U2af1l4-206ENSMUST00000163654 781 ntTSL 2 BASIC13.51□□□□□ -0.25
Sf3b1Q99NB9 U2af1l4-221ENSMUST00000167361 860 ntTSL 2 BASIC13.51□□□□□ -0.25
Sf3b1Q99NB9 Gsdmcl-ps-204ENSMUST00000191285 637 ntTSL 3 BASIC13.51□□□□□ -0.25
Sf3b1Q99NB9 Sox2ot-207ENSMUST00000196987 727 ntTSL 3 BASIC13.51□□□□□ -0.25
Sf3b1Q99NB9 Gm13097-201ENSMUST00000210722 397 ntBASIC13.51□□□□□ -0.25
Sf3b1Q99NB9 Mdm2-201ENSMUST00000020408 3099 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Sf3b1Q99NB9 Pax6-202ENSMUST00000090397 3069 ntAPPRIS ALT1 TSL 5 BASIC13.51□□□□□ -0.25
Sf3b1Q99NB9 H2-Ob-204ENSMUST00000173764 1319 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
Sf3b1Q99NB9 8430408G22Rik-201ENSMUST00000067354 1339 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Sf3b1Q99NB9 Gtf2i-206ENSMUST00000172715 4114 ntTSL 5 BASIC13.51□□□□□ -0.25
Sf3b1Q99NB9 6030458C11Rik-202ENSMUST00000227299 3206 ntBASIC13.51□□□□□ -0.25
Sf3b1Q99NB9 Bdp1-201ENSMUST00000038104 9921 ntAPPRIS P2 TSL 5 BASIC13.51□□□□□ -0.25
Sf3b1Q99NB9 Tsku-204ENSMUST00000165901 2514 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Sf3b1Q99NB9 Nmbr-201ENSMUST00000020015 1599 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Sf3b1Q99NB9 Rsph3b-201ENSMUST00000024572 1614 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Sf3b1Q99NB9 Ssr1-203ENSMUST00000225246 1825 ntBASIC13.51□□□□□ -0.25
Sf3b1Q99NB9 Kctd11-201ENSMUST00000050555 3146 ntAPPRIS P1 BASIC13.51□□□□□ -0.25
Sf3b1Q99NB9 Add2-202ENSMUST00000203196 1970 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
Sf3b1Q99NB9 Eln-201ENSMUST00000015138 3853 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Sf3b1Q99NB9 C5ar1-201ENSMUST00000050770 2481 ntAPPRIS P1 TSL 3 BASIC13.5□□□□□ -0.25
Sf3b1Q99NB9 Lmbr1l-202ENSMUST00000109127 2548 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
Sf3b1Q99NB9 Rbm11-203ENSMUST00000114253 2699 ntAPPRIS P2 TSL 1 (best) BASIC13.5□□□□□ -0.25
Sf3b1Q99NB9 Podn-201ENSMUST00000044248 2885 ntAPPRIS P1 TSL 5 BASIC13.5□□□□□ -0.25
Sf3b1Q99NB9 Gpd2-207ENSMUST00000169687 5745 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Sf3b1Q99NB9 Gga3-202ENSMUST00000106508 3582 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
Sf3b1Q99NB9 Park7-202ENSMUST00000105673 919 ntAPPRIS P1 TSL 5 BASIC13.5□□□□□ -0.25
Sf3b1Q99NB9 Prr29-202ENSMUST00000106816 771 ntAPPRIS P2 TSL 1 (best) BASIC13.5□□□□□ -0.25
Sf3b1Q99NB9 Fam110a-202ENSMUST00000109863 1284 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Sf3b1Q99NB9 Gm15276-201ENSMUST00000145953 498 ntBASIC13.5□□□□□ -0.25
Sf3b1Q99NB9 Gm17586-201ENSMUST00000181502 908 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
Sf3b1Q99NB9 Gm35082-201ENSMUST00000207308 338 ntTSL 3 BASIC13.5□□□□□ -0.25
Sf3b1Q99NB9 AC166095.1-201ENSMUST00000223731 1241 ntBASIC13.5□□□□□ -0.25
Sf3b1Q99NB9 Riiad1-201ENSMUST00000029785 630 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Sf3b1Q99NB9 Ccs-201ENSMUST00000037246 1057 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Sf3b1Q99NB9 Tmem247-201ENSMUST00000042172 752 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
Sf3b1Q99NB9 Ahdc1-204ENSMUST00000105916 6602 ntAPPRIS P1 TSL 5 BASIC13.5□□□□□ -0.25
Sf3b1Q99NB9 Itga6-202ENSMUST00000112101 4156 ntAPPRIS ALT1 TSL 5 BASIC13.5□□□□□ -0.25
Sf3b1Q99NB9 Pax2-203ENSMUST00000174490 4358 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Sf3b1Q99NB9 1110034G24Rik-202ENSMUST00000110132 1471 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Sf3b1Q99NB9 Tspan32-203ENSMUST00000082008 1587 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
Sf3b1Q99NB9 Prnd-203ENSMUST00000110171 1938 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Sf3b1Q99NB9 Marco-201ENSMUST00000027639 1925 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Sf3b1Q99NB9 Gm26593-201ENSMUST00000181848 1970 ntTSL 5 BASIC13.5□□□□□ -0.25
Sf3b1Q99NB9 Myc-205ENSMUST00000161976 2338 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
Sf3b1Q99NB9 Myc-201ENSMUST00000022971 2338 ntAPPRIS ALT1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Sf3b1Q99NB9 Tcf4-204ENSMUST00000114978 2437 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
Sf3b1Q99NB9 Mllt6-201ENSMUST00000044730 7274 ntAPPRIS P2 TSL 1 (best) BASIC13.5□□□□□ -0.25
Sf3b1Q99NB9 Ankfn1-201ENSMUST00000050983 2665 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
Sf3b1Q99NB9 Colgalt1-201ENSMUST00000047903 3207 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Sf3b1Q99NB9 Slc19a2-201ENSMUST00000044021 3571 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Sf3b1Q99NB9 Ube3a-216ENSMUST00000202945 3889 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
Sf3b1Q99NB9 Sema6c-201ENSMUST00000090821 3933 ntAPPRIS P3 TSL 5 BASIC13.5□□□□□ -0.25
Sf3b1Q99NB9 Ak4-201ENSMUST00000102780 4186 ntAPPRIS P1 TSL 5 BASIC13.5□□□□□ -0.25
Sf3b1Q99NB9 Dnmt1-207ENSMUST00000216540 5543 ntAPPRIS ALT2 TSL 1 (best) BASIC13.49□□□□□ -0.25
Sf3b1Q99NB9 Mapk8ip3-206ENSMUST00000120035 4125 ntAPPRIS ALT2 TSL 1 (best) BASIC13.49□□□□□ -0.25
Sf3b1Q99NB9 Casc4-202ENSMUST00000089912 3602 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
Sf3b1Q99NB9 Acad12-202ENSMUST00000111776 2269 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
Sf3b1Q99NB9 Adarb1-201ENSMUST00000020496 6549 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Retrieved 100 of 76,532 protein–RNA pairs in 33 ms