Protein–RNA interactions for Protein: Q6PDX6

Rnf220, E3 ubiquitin-protein ligase Rnf220, mousemouse

Predictions only

Length 566 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf220Q6PDX6 Cnbd2-202ENSMUST00000073942 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC12.07□□□□□ -0.48
Rnf220Q6PDX6 Brd3-210ENSMUST00000164296 2791 ntAPPRIS P3 TSL 5 BASIC12.07□□□□□ -0.48
Rnf220Q6PDX6 Rbm8a-203ENSMUST00000198027 2757 ntTSL 3 BASIC12.07□□□□□ -0.48
Rnf220Q6PDX6 Gm45187-201ENSMUST00000207697 2760 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
Rnf220Q6PDX6 Prkcd-203ENSMUST00000112203 1927 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
Rnf220Q6PDX6 Rxra-206ENSMUST00000166775 3216 ntAPPRIS P1 TSL 5 BASIC12.07□□□□□ -0.48
Rnf220Q6PDX6 Madd-209ENSMUST00000111371 5816 ntAPPRIS ALT2 TSL 2 BASIC12.07□□□□□ -0.48
Rnf220Q6PDX6 Madd-210ENSMUST00000111372 5813 ntAPPRIS ALT2 TSL 2 BASIC12.07□□□□□ -0.48
Rnf220Q6PDX6 Cyb5r3-202ENSMUST00000162178 2547 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
Rnf220Q6PDX6 Ccdc171-204ENSMUST00000126429 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC12.07□□□□□ -0.48
Rnf220Q6PDX6 Ppp1r18-206ENSMUST00000190496 1395 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
Rnf220Q6PDX6 Lcmt1-201ENSMUST00000033025 1369 ntAPPRIS P2 TSL 1 (best) BASIC12.07□□□□□ -0.48
Rnf220Q6PDX6 Ttbk2-202ENSMUST00000057135 11066 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Rnf220Q6PDX6 Aff3-202ENSMUST00000039827 6010 ntAPPRIS ALT2 TSL 5 BASIC12.07□□□□□ -0.48
Rnf220Q6PDX6 Scd2-201ENSMUST00000026221 5453 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Rnf220Q6PDX6 Hnrnpf-209ENSMUST00000180020 2280 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Rnf220Q6PDX6 Vipr1-201ENSMUST00000035115 4902 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Rnf220Q6PDX6 Ppp1r18-205ENSMUST00000187690 3185 ntAPPRIS P2 TSL 1 (best) BASIC12.07□□□□□ -0.48
Rnf220Q6PDX6 Stxbp5l-201ENSMUST00000023526 3344 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
Rnf220Q6PDX6 Sstr3-201ENSMUST00000053239 3928 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Rnf220Q6PDX6 Msmp-201ENSMUST00000107884 743 ntAPPRIS P1 TSL 3 BASIC12.07□□□□□ -0.48
Rnf220Q6PDX6 Ppil3-203ENSMUST00000114348 1033 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Rnf220Q6PDX6 Rpl17-ps10-201ENSMUST00000119383 555 ntBASIC12.07□□□□□ -0.48
Rnf220Q6PDX6 Rpl17-ps9-201ENSMUST00000119541 555 ntBASIC12.07□□□□□ -0.48
Rnf220Q6PDX6 Gm11557-201ENSMUST00000120200 1008 ntBASIC12.07□□□□□ -0.48
Rnf220Q6PDX6 Rpl17-ps4-201ENSMUST00000120241 555 ntBASIC12.07□□□□□ -0.48
Rnf220Q6PDX6 Gm15393-201ENSMUST00000120499 219 ntBASIC12.07□□□□□ -0.48
Rnf220Q6PDX6 Gm13385-201ENSMUST00000121089 220 ntBASIC12.07□□□□□ -0.48
Rnf220Q6PDX6 Abhd11os-201ENSMUST00000136022 604 ntTSL 2 BASIC12.07□□□□□ -0.48
Rnf220Q6PDX6 Tgfb1i1-203ENSMUST00000163609 1053 ntTSL 5 BASIC12.07□□□□□ -0.48
Rnf220Q6PDX6 Gm26771-201ENSMUST00000180472 1082 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
Rnf220Q6PDX6 Gm8927-201ENSMUST00000181978 981 ntBASIC12.07□□□□□ -0.48
Rnf220Q6PDX6 Smim22-206ENSMUST00000184256 381 ntTSL 3 BASIC12.07□□□□□ -0.48
Rnf220Q6PDX6 Gm44662-201ENSMUST00000206970 412 ntTSL 5 BASIC12.07□□□□□ -0.48
Rnf220Q6PDX6 Gm46209-201ENSMUST00000217912 553 ntBASIC12.07□□□□□ -0.48
Rnf220Q6PDX6 Brf2-201ENSMUST00000033877 1899 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Rnf220Q6PDX6 Gm8396-201ENSMUST00000057361 823 ntBASIC12.07□□□□□ -0.48
Rnf220Q6PDX6 Tmem116-202ENSMUST00000060004 1297 ntAPPRIS P3 TSL 1 (best) BASIC12.07□□□□□ -0.48
Rnf220Q6PDX6 Gm3222-201ENSMUST00000071282 990 ntBASIC12.07□□□□□ -0.48
Rnf220Q6PDX6 Rhox9-201ENSMUST00000089062 882 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Rnf220Q6PDX6 Gm43064-201ENSMUST00000199710 3144 ntAPPRIS P1 TSL 2 BASIC12.07□□□□□ -0.48
Rnf220Q6PDX6 Arhgef9-206ENSMUST00000113884 3784 ntTSL 5 BASIC12.07□□□□□ -0.48
Rnf220Q6PDX6 Ncapd3-201ENSMUST00000073127 5499 ntAPPRIS P2 TSL 5 BASIC12.07□□□□□ -0.48
Rnf220Q6PDX6 Plrg1-202ENSMUST00000122128 1608 ntTSL 5 BASIC12.07□□□□□ -0.48
Rnf220Q6PDX6 Cmklr1-201ENSMUST00000047936 2882 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Rnf220Q6PDX6 Usp16-202ENSMUST00000119504 2562 ntTSL 5 BASIC12.07□□□□□ -0.48
Rnf220Q6PDX6 Tmx2-203ENSMUST00000111665 2282 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Rnf220Q6PDX6 Micalcl-201ENSMUST00000033033 2259 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
Rnf220Q6PDX6 Hoxa9-201ENSMUST00000048680 3226 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Rnf220Q6PDX6 Zp1-201ENSMUST00000025641 1963 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Rnf220Q6PDX6 Mum1l1-204ENSMUST00000113045 4523 ntAPPRIS P1 TSL 3 BASIC12.07□□□□□ -0.48
Rnf220Q6PDX6 Lrig2-201ENSMUST00000046316 7099 ntAPPRIS P3 TSL 1 (best) BASIC12.07□□□□□ -0.48
Rnf220Q6PDX6 Bub3-203ENSMUST00000207442 3414 ntAPPRIS ALT1 TSL 3 BASIC12.07□□□□□ -0.48
Rnf220Q6PDX6 Ell3-202ENSMUST00000116432 1674 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Rnf220Q6PDX6 Slc35b1-201ENSMUST00000021243 1523 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Rnf220Q6PDX6 Gm37542-201ENSMUST00000192563 2832 ntBASIC12.06□□□□□ -0.48
Rnf220Q6PDX6 Gm13264-201ENSMUST00000138416 2011 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Rnf220Q6PDX6 Zfp961-202ENSMUST00000131237 2689 ntAPPRIS ALT2 TSL 3 BASIC12.06□□□□□ -0.48
Rnf220Q6PDX6 Vsig10l-201ENSMUST00000107977 3836 ntAPPRIS ALT2 TSL 5 BASIC12.06□□□□□ -0.48
Rnf220Q6PDX6 Zc3h18-201ENSMUST00000017622 3810 ntAPPRIS P4 TSL 1 (best) BASIC12.06□□□□□ -0.48
Rnf220Q6PDX6 Hhipl2-201ENSMUST00000065900 2525 ntAPPRIS P1 TSL 5 BASIC12.06□□□□□ -0.48
Rnf220Q6PDX6 Msh5-201ENSMUST00000007250 2886 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Rnf220Q6PDX6 Nup93-201ENSMUST00000079961 2707 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Rnf220Q6PDX6 Copb2-201ENSMUST00000035033 3050 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Rnf220Q6PDX6 Ccdc85a-202ENSMUST00000093253 5431 ntAPPRIS P3 TSL 1 (best) BASIC12.06□□□□□ -0.48
Rnf220Q6PDX6 Rragd-202ENSMUST00000084747 4295 ntTSL 5 BASIC12.06□□□□□ -0.48
Rnf220Q6PDX6 Eif4g1-217ENSMUST00000143939 5114 ntAPPRIS ALT2 TSL 5 BASIC12.06□□□□□ -0.48
Rnf220Q6PDX6 Mlc1-201ENSMUST00000042594 2783 ntAPPRIS P2 TSL 1 (best) BASIC12.06□□□□□ -0.48
Rnf220Q6PDX6 Mansc4-202ENSMUST00000123367 542 ntAPPRIS ALT2 TSL 2 BASIC12.06□□□□□ -0.48
Rnf220Q6PDX6 9130019P16Rik-201ENSMUST00000135612 1019 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Rnf220Q6PDX6 1700007J10Rik-202ENSMUST00000153431 1111 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Rnf220Q6PDX6 Gm10044-204ENSMUST00000170177 659 ntTSL 3 BASIC12.06□□□□□ -0.48
Rnf220Q6PDX6 1190007I07Rik-202ENSMUST00000176200 586 ntAPPRIS P1 TSL 2 BASIC12.06□□□□□ -0.48
Rnf220Q6PDX6 1190007I07Rik-203ENSMUST00000183363 406 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Rnf220Q6PDX6 Gm10766-202ENSMUST00000194123 606 ntBASIC12.06□□□□□ -0.48
Rnf220Q6PDX6 Pym1-203ENSMUST00000218218 1143 ntTSL 3 BASIC12.06□□□□□ -0.48
Rnf220Q6PDX6 AC131997.1-201ENSMUST00000228611 1229 ntBASIC12.06□□□□□ -0.48
Rnf220Q6PDX6 Kcnj5-201ENSMUST00000034533 4685 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Rnf220Q6PDX6 Nanos3-201ENSMUST00000070102 730 ntAPPRIS P2 TSL 1 (best) BASIC12.06□□□□□ -0.48
Rnf220Q6PDX6 1190007I07Rik-201ENSMUST00000079648 716 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Rnf220Q6PDX6 Cyp26b1-202ENSMUST00000168003 4170 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Rnf220Q6PDX6 Cyp26b1-201ENSMUST00000077705 4157 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Rnf220Q6PDX6 Psmd11-201ENSMUST00000017572 2848 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Rnf220Q6PDX6 Apol6-206ENSMUST00000149569 2315 ntAPPRIS ALT2 TSL 1 (best) BASIC12.06□□□□□ -0.48
Rnf220Q6PDX6 AC126257.2-201ENSMUST00000215507 2300 ntBASIC12.06□□□□□ -0.48
Rnf220Q6PDX6 Igsf3-201ENSMUST00000043983 7371 ntAPPRIS P2 TSL 1 (best) BASIC12.06□□□□□ -0.48
Rnf220Q6PDX6 Trp53-202ENSMUST00000108657 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC12.06□□□□□ -0.48
Rnf220Q6PDX6 Gm14169-201ENSMUST00000124676 2519 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Rnf220Q6PDX6 Iffo2-202ENSMUST00000123827 2036 ntAPPRIS P3 TSL 1 (best) BASIC12.06□□□□□ -0.48
Rnf220Q6PDX6 Gm5053-201ENSMUST00000208361 1678 ntBASIC12.06□□□□□ -0.48
Rnf220Q6PDX6 Ager-209ENSMUST00000174496 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC12.06□□□□□ -0.48
Rnf220Q6PDX6 Txndc5-203ENSMUST00000160653 2586 ntAPPRIS ALT2 TSL 1 (best) BASIC12.06□□□□□ -0.48
Rnf220Q6PDX6 Stat1-211ENSMUST00000189347 2588 ntAPPRIS ALT1 TSL 5 BASIC12.06□□□□□ -0.48
Rnf220Q6PDX6 CT025681.1-201ENSMUST00000225453 1855 ntBASIC12.06□□□□□ -0.48
Rnf220Q6PDX6 Gm5124-202ENSMUST00000132683 2083 ntBASIC12.06□□□□□ -0.48
Rnf220Q6PDX6 Ccnh-204ENSMUST00000164127 1718 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Rnf220Q6PDX6 Odf2-209ENSMUST00000113764 2450 ntAPPRIS P3 TSL 5 BASIC12.05□□□□□ -0.48
Rnf220Q6PDX6 Zfand4-202ENSMUST00000112900 3220 ntAPPRIS ALT2 TSL 5 BASIC12.05□□□□□ -0.48
Rnf220Q6PDX6 Tgfbr1-202ENSMUST00000044234 2861 ntAPPRIS ALT2 TSL 1 (best) BASIC12.05□□□□□ -0.48
Rnf220Q6PDX6 Nfatc2-209ENSMUST00000171689 2742 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Retrieved 100 of 76,532 protein–RNA pairs in 32.3 ms