Protein–RNA interactions for Protein: P49135

Ercc3, General transcription and DNA repair factor IIH helicase subunit XPB, mousemouse

Predictions only

Length 783 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ercc3P49135 Mecom-206ENSMUST00000172694 4381 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Ercc3P49135 Mdga1-201ENSMUST00000073556 7566 ntAPPRIS P2 TSL 5 BASIC15.11■□□□□ 0.01
Ercc3P49135 Secisbp2-201ENSMUST00000040117 3328 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Ercc3P49135 Hvcn1-201ENSMUST00000072602 2790 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Ercc3P49135 Olfr56-204ENSMUST00000203149 1808 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Ercc3P49135 B230344G16Rik-201ENSMUST00000180782 2024 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Ercc3P49135 Ppp4r3b-202ENSMUST00000102856 2410 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Ercc3P49135 Polr3e-202ENSMUST00000106483 3001 ntAPPRIS P3 TSL 5 BASIC15.11■□□□□ 0.01
Ercc3P49135 Fzr1-202ENSMUST00000118812 1215 ntTSL 5 BASIC15.11■□□□□ 0.01
Ercc3P49135 Gm12291-201ENSMUST00000121627 311 ntBASIC15.11■□□□□ 0.01
Ercc3P49135 Gm16124-201ENSMUST00000146938 516 ntTSL 2 BASIC15.11■□□□□ 0.01
Ercc3P49135 Gm45930-201ENSMUST00000221330 292 ntBASIC15.11■□□□□ 0.01
Ercc3P49135 Gm11562-201ENSMUST00000073853 817 ntAPPRIS P1 BASIC15.11■□□□□ 0.01
Ercc3P49135 Asxl1-205ENSMUST00000227428 6981 ntAPPRIS ALT2 BASIC15.11■□□□□ 0.01
Ercc3P49135 Pacrg-201ENSMUST00000041463 1475 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Ercc3P49135 Dnajc14-207ENSMUST00000219508 2298 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Ercc3P49135 Gm13288-201ENSMUST00000094977 2850 ntAPPRIS P1 BASIC15.11■□□□□ 0.01
Ercc3P49135 Pfkfb3-204ENSMUST00000114844 2107 ntTSL 5 BASIC15.11■□□□□ 0.01
Ercc3P49135 Rgs20-202ENSMUST00000118000 2125 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
Ercc3P49135 Gm11661-201ENSMUST00000121761 1327 ntBASIC15.11■□□□□ 0.01
Ercc3P49135 Dync1i1-204ENSMUST00000115559 2599 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
Ercc3P49135 Tppp-201ENSMUST00000022057 5090 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Ercc3P49135 Zbtb2-202ENSMUST00000100078 3226 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Ercc3P49135 Hpse2-201ENSMUST00000099428 1779 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Ercc3P49135 Spon1-201ENSMUST00000046687 6161 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Ercc3P49135 Sgip1-201ENSMUST00000066824 4305 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Ercc3P49135 Alppl2-202ENSMUST00000188310 2016 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Ercc3P49135 Phactr3-202ENSMUST00000103066 2680 ntAPPRIS P4 TSL 1 (best) BASIC15.1■□□□□ 0.01
Ercc3P49135 Ifnlr1-201ENSMUST00000074408 4182 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Ercc3P49135 Klhdc7b-201ENSMUST00000166926 1818 ntAPPRIS P2 BASIC15.1■□□□□ 0.01
Ercc3P49135 Ssr1-203ENSMUST00000225246 1825 ntBASIC15.1■□□□□ 0.01
Ercc3P49135 Slc33a1-201ENSMUST00000029402 3150 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Ercc3P49135 Gabrg3-202ENSMUST00000068911 9767 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Ercc3P49135 C530008M17Rik-204ENSMUST00000121160 6921 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
Ercc3P49135 Taf1c-201ENSMUST00000093099 3236 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Ercc3P49135 Ctps2-206ENSMUST00000112303 3289 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Ercc3P49135 Ppp1r12b-201ENSMUST00000045665 8840 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
Ercc3P49135 Rhobtb1-205ENSMUST00000164034 2421 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Ercc3P49135 Elovl1-203ENSMUST00000102673 1248 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Ercc3P49135 Adamtsl1-204ENSMUST00000120678 977 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Ercc3P49135 Agtpbp1-213ENSMUST00000167096 508 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Ercc3P49135 Gm27516-201ENSMUST00000184237 98 ntBASIC15.1■□□□□ 0.01
Ercc3P49135 2810039B14Rik-206ENSMUST00000185040 1113 ntBASIC15.1■□□□□ 0.01
Ercc3P49135 Gm38092-201ENSMUST00000195600 653 ntBASIC15.1■□□□□ 0.01
Ercc3P49135 Sox2ot-205ENSMUST00000196795 754 ntTSL 3 BASIC15.1■□□□□ 0.01
Ercc3P49135 Gm43416-201ENSMUST00000201916 1015 ntBASIC15.1■□□□□ 0.01
Ercc3P49135 Tmem176b-206ENSMUST00000203355 1202 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
Ercc3P49135 Gm45720-201ENSMUST00000211881 484 ntTSL 3 BASIC15.1■□□□□ 0.01
Ercc3P49135 AC144543.1-201ENSMUST00000221840 1064 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Ercc3P49135 4921530L21Rik-202ENSMUST00000228913 1115 ntAPPRIS P1 BASIC15.1■□□□□ 0.01
Ercc3P49135 Olfr707-201ENSMUST00000088687 924 ntAPPRIS P1 BASIC15.1■□□□□ 0.01
Ercc3P49135 Olfr1532-ps1-201ENSMUST00000098140 924 ntAPPRIS P1 BASIC15.1■□□□□ 0.01
Ercc3P49135 Slc38a10-216ENSMUST00000179094 4052 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
Ercc3P49135 Zfp467-206ENSMUST00000114561 3619 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Ercc3P49135 Glis2-201ENSMUST00000014447 3619 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Ercc3P49135 Tekt4-201ENSMUST00000025002 1532 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Ercc3P49135 Ppp4r3b-201ENSMUST00000020755 5125 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Ercc3P49135 Rab31-201ENSMUST00000070673 3476 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Ercc3P49135 Caskin2-201ENSMUST00000041684 4929 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Ercc3P49135 Nek1-201ENSMUST00000034065 5401 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
Ercc3P49135 Gemin2-201ENSMUST00000021379 1588 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Ercc3P49135 Dph2-201ENSMUST00000030265 2555 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Ercc3P49135 Eya1-201ENSMUST00000027066 4347 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
Ercc3P49135 Otop1-201ENSMUST00000063136 3106 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
Ercc3P49135 Plagl1-201ENSMUST00000121325 3946 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
Ercc3P49135 Gm8228-201ENSMUST00000189949 2192 ntBASIC15.09■□□□□ 0.01
Ercc3P49135 Chrna10-201ENSMUST00000084830 2513 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Ercc3P49135 Dnajb4-201ENSMUST00000029669 1497 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
Ercc3P49135 Smg7-203ENSMUST00000111836 3928 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Ercc3P49135 4930430F08Rik-201ENSMUST00000054471 2564 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Ercc3P49135 Ints7-201ENSMUST00000045450 5347 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Ercc3P49135 Rnps1-201ENSMUST00000088512 1798 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Ercc3P49135 Rab11a-208ENSMUST00000172298 2336 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Ercc3P49135 Sall4-201ENSMUST00000029061 5073 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Ercc3P49135 Arrb1-201ENSMUST00000032995 3715 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Ercc3P49135 Lmntd1-201ENSMUST00000111706 2350 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Ercc3P49135 Toe1-202ENSMUST00000106455 1209 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Ercc3P49135 Gm12329-201ENSMUST00000120829 1007 ntBASIC15.09■□□□□ 0.01
Ercc3P49135 Cabp2-201ENSMUST00000159148 1030 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Ercc3P49135 Gm23363-201ENSMUST00000175024 79 ntBASIC15.09■□□□□ 0.01
Ercc3P49135 Gm43118-201ENSMUST00000199149 775 ntBASIC15.09■□□□□ 0.01
Ercc3P49135 Gm44772-201ENSMUST00000207623 1191 ntBASIC15.09■□□□□ 0.01
Ercc3P49135 Ormdl2-204ENSMUST00000219524 724 ntAPPRIS P1 TSL 2 BASIC15.09■□□□□ 0.01
Ercc3P49135 AC133598.1-201ENSMUST00000224327 660 ntBASIC15.09■□□□□ 0.01
Ercc3P49135 Acin1-221ENSMUST00000150371 2494 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Ercc3P49135 Epb41l5-208ENSMUST00000191046 6870 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Ercc3P49135 Ugt1a2-201ENSMUST00000049289 2211 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Ercc3P49135 Tspan9-202ENSMUST00000112171 2584 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Ercc3P49135 C530008M17Rik-202ENSMUST00000120639 6826 ntAPPRIS P2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Ercc3P49135 C530008M17Rik-211ENSMUST00000163347 6835 ntAPPRIS P2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Ercc3P49135 Gm3756-201ENSMUST00000169182 1355 ntBASIC15.09■□□□□ 0.01
Ercc3P49135 Ankrd61-201ENSMUST00000079624 1720 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Ercc3P49135 Armc8-201ENSMUST00000035043 4647 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Ercc3P49135 Adcyap1r1-201ENSMUST00000070736 3695 ntAPPRIS P4 TSL 1 (best) BASIC15.08■□□□□ 0.01
Ercc3P49135 Lims1-202ENSMUST00000020078 4327 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
Ercc3P49135 Sh3bp4-201ENSMUST00000066279 4995 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
Ercc3P49135 Trappc12-201ENSMUST00000020954 3377 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
Ercc3P49135 Gm20605-201ENSMUST00000177545 4464 ntAPPRIS P1 TSL 2 BASIC15.08■□□□□ 0.01
Ercc3P49135 H3f3a-205ENSMUST00000161308 2841 ntAPPRIS P2 TSL 1 (best) BASIC15.08■□□□□ 0.01
Ercc3P49135 Wsb2-202ENSMUST00000111959 1526 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0.01
Retrieved 100 of 76,532 protein–RNA pairs in 148.1 ms