Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Adra1b-201ENSMUST00000067258 3331 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Scn11aQ9R053 Ccr6-203ENSMUST00000166348 1310 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Scn11aQ9R053 Tead3-207ENSMUST00000219703 1320 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
Scn11aQ9R053 Rtbdn-201ENSMUST00000067472 1908 ntAPPRIS P2 TSL 1 (best) BASIC14.87□□□□□ -0.03
Scn11aQ9R053 Cdk11b-201ENSMUST00000067081 2595 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
Scn11aQ9R053 Zp1-201ENSMUST00000025641 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Scn11aQ9R053 Cnih4-204ENSMUST00000134115 3268 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Scn11aQ9R053 Edem3-203ENSMUST00000188145 3262 ntTSL 5 BASIC14.87□□□□□ -0.03
Scn11aQ9R053 Zfp558-202ENSMUST00000034647 1701 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
Scn11aQ9R053 Lrrc7-201ENSMUST00000106044 5918 ntAPPRIS ALT2 TSL 5 BASIC14.87□□□□□ -0.03
Scn11aQ9R053 Cldn18-202ENSMUST00000112882 1750 ntAPPRIS ALT1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Scn11aQ9R053 Kcnh7-202ENSMUST00000112452 2849 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Scn11aQ9R053 Lyzl6-202ENSMUST00000107014 802 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Scn11aQ9R053 Rpsa-ps4-201ENSMUST00000121691 888 ntBASIC14.86□□□□□ -0.03
Scn11aQ9R053 Gm14396-201ENSMUST00000126966 548 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Scn11aQ9R053 Gm25951-201ENSMUST00000175330 64 ntBASIC14.86□□□□□ -0.03
Scn11aQ9R053 Gm19287-201ENSMUST00000203190 358 ntBASIC14.86□□□□□ -0.03
Scn11aQ9R053 4930448A20Rik-201ENSMUST00000205988 1034 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Scn11aQ9R053 Mrpl41-201ENSMUST00000045604 776 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Scn11aQ9R053 Pcsk6-202ENSMUST00000098391 4207 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
Scn11aQ9R053 Fam160a2-204ENSMUST00000122327 3521 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
Scn11aQ9R053 Shpk-201ENSMUST00000006105 2808 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Scn11aQ9R053 Fgd1-201ENSMUST00000026296 4001 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Scn11aQ9R053 Wiz-201ENSMUST00000064694 2871 ntAPPRIS P4 TSL 1 (best) BASIC14.86□□□□□ -0.03
Scn11aQ9R053 Gne-209ENSMUST00000173234 2149 ntTSL 5 BASIC14.86□□□□□ -0.03
Scn11aQ9R053 Gm45266-201ENSMUST00000210111 2173 ntBASIC14.86□□□□□ -0.03
Scn11aQ9R053 Fam227a-204ENSMUST00000187519 2283 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Scn11aQ9R053 Acat2-201ENSMUST00000007005 2250 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Scn11aQ9R053 Cdyl-202ENSMUST00000163595 3575 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Scn11aQ9R053 Rab15-201ENSMUST00000021459 3158 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Scn11aQ9R053 Wfdc8-201ENSMUST00000094351 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
Scn11aQ9R053 Rnf4-201ENSMUST00000030992 2895 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Scn11aQ9R053 Gm8038-201ENSMUST00000164674 2044 ntBASIC14.86□□□□□ -0.03
Scn11aQ9R053 AC091764.2-201ENSMUST00000218190 1590 ntTSL 5 BASIC14.86□□□□□ -0.03
Scn11aQ9R053 Gm15477-201ENSMUST00000140578 2130 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Scn11aQ9R053 Gm26599-201ENSMUST00000180590 3189 ntTSL 5 BASIC14.86□□□□□ -0.03
Scn11aQ9R053 Gm12029-201ENSMUST00000120073 832 ntBASIC14.85□□□□□ -0.03
Scn11aQ9R053 Gm12266-201ENSMUST00000120311 962 ntBASIC14.85□□□□□ -0.03
Scn11aQ9R053 Immp2l-202ENSMUST00000132121 1147 ntAPPRIS P1 TSL 5 BASIC14.85□□□□□ -0.03
Scn11aQ9R053 Omt2a-203ENSMUST00000166056 1167 ntAPPRIS P4 TSL 1 (best) BASIC14.85□□□□□ -0.03
Scn11aQ9R053 Gm20392-201ENSMUST00000173047 701 ntBASIC14.85□□□□□ -0.03
Scn11aQ9R053 Gm270-201ENSMUST00000223010 976 ntBASIC14.85□□□□□ -0.03
Scn11aQ9R053 Gm6781-201ENSMUST00000038304 1242 ntBASIC14.85□□□□□ -0.03
Scn11aQ9R053 Cd320-202ENSMUST00000087559 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
Scn11aQ9R053 E130317F20Rik-202ENSMUST00000217802 3420 ntBASIC14.85□□□□□ -0.03
Scn11aQ9R053 Nphs1os-201ENSMUST00000152625 1339 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
Scn11aQ9R053 Spatc1l-201ENSMUST00000009259 1332 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Scn11aQ9R053 Zkscan17-201ENSMUST00000013262 4064 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Scn11aQ9R053 Gm38391-201ENSMUST00000191720 4069 ntBASIC14.85□□□□□ -0.03
Scn11aQ9R053 Usp42-201ENSMUST00000053287 5151 ntAPPRIS P1 TSL 5 BASIC14.85□□□□□ -0.03
Scn11aQ9R053 Tbata-201ENSMUST00000035894 1506 ntAPPRIS P3 TSL 5 BASIC14.85□□□□□ -0.03
Scn11aQ9R053 Kcnn1-201ENSMUST00000110078 4047 ntAPPRIS P2 TSL 1 (best) BASIC14.85□□□□□ -0.03
Scn11aQ9R053 Pex2-206ENSMUST00000195855 1587 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Scn11aQ9R053 Nomo1-201ENSMUST00000033121 4257 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Scn11aQ9R053 Mcur1-201ENSMUST00000021800 4339 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Scn11aQ9R053 Daw1-201ENSMUST00000065403 1651 ntAPPRIS P1 TSL 5 BASIC14.85□□□□□ -0.03
Scn11aQ9R053 Adcyap1r1-203ENSMUST00000165786 1745 ntAPPRIS ALT2 TSL 5 BASIC14.85□□□□□ -0.03
Scn11aQ9R053 Nrg1-201ENSMUST00000073884 2452 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
Scn11aQ9R053 Snrpn-201ENSMUST00000059305 1932 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Scn11aQ9R053 Gm8199-201ENSMUST00000121323 823 ntBASIC14.85□□□□□ -0.03
Scn11aQ9R053 Tmem190-201ENSMUST00000013235 589 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Scn11aQ9R053 Rps28-203ENSMUST00000173019 437 ntAPPRIS P1 TSL 3 BASIC14.85□□□□□ -0.03
Scn11aQ9R053 3110080O07Rik-201ENSMUST00000193469 1021 ntBASIC14.85□□□□□ -0.03
Scn11aQ9R053 1700039I01Rik-201ENSMUST00000194370 479 ntBASIC14.85□□□□□ -0.03
Scn11aQ9R053 Abhd14a-201ENSMUST00000048685 1256 ntAPPRIS P1 TSL 5 BASIC14.85□□□□□ -0.03
Scn11aQ9R053 S100a1-201ENSMUST00000060738 677 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Scn11aQ9R053 Cthrc1-201ENSMUST00000067072 1166 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Scn11aQ9R053 Lig3-202ENSMUST00000080461 3056 ntTSL 5 BASIC14.85□□□□□ -0.03
Scn11aQ9R053 Gpatch4-203ENSMUST00000193398 2210 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Scn11aQ9R053 Usp53-202ENSMUST00000197314 3586 ntTSL 5 BASIC14.85□□□□□ -0.03
Scn11aQ9R053 Gm14123-201ENSMUST00000156345 2658 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
Scn11aQ9R053 Tmem41b-201ENSMUST00000094097 3840 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Scn11aQ9R053 Flcn-202ENSMUST00000091246 2768 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Scn11aQ9R053 Arid4b-202ENSMUST00000110533 3020 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
Scn11aQ9R053 Ddx10-201ENSMUST00000065630 3128 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Scn11aQ9R053 Plxnd1-201ENSMUST00000015511 6907 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Scn11aQ9R053 Sgms1-212ENSMUST00000151289 2488 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Scn11aQ9R053 Clstn2-202ENSMUST00000162295 4174 ntAPPRIS ALT2 TSL 5 BASIC14.84□□□□□ -0.03
Scn11aQ9R053 Scap-201ENSMUST00000098350 4227 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Scn11aQ9R053 Prpf40a-206ENSMUST00000209364 2833 ntAPPRIS ALT2 TSL 5 BASIC14.84□□□□□ -0.03
Scn11aQ9R053 Gm12164-201ENSMUST00000121695 551 ntBASIC14.84□□□□□ -0.03
Scn11aQ9R053 Gm13944-201ENSMUST00000126572 721 ntTSL 2 BASIC14.84□□□□□ -0.03
Scn11aQ9R053 Gm12589-201ENSMUST00000153767 638 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
Scn11aQ9R053 Sh2d6-203ENSMUST00000159877 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
Scn11aQ9R053 Sh2d6-206ENSMUST00000162561 1251 ntAPPRIS P5 TSL 1 (best) BASIC14.84□□□□□ -0.03
Scn11aQ9R053 Gm8492-201ENSMUST00000182375 987 ntBASIC14.84□□□□□ -0.03
Scn11aQ9R053 AC159103.1-201ENSMUST00000228325 429 ntBASIC14.84□□□□□ -0.03
Scn11aQ9R053 Rab30-202ENSMUST00000107179 1304 ntTSL 5 BASIC14.84□□□□□ -0.03
Scn11aQ9R053 Slc44a5-201ENSMUST00000089948 4098 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Scn11aQ9R053 Zfp369-203ENSMUST00000130799 1580 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
Scn11aQ9R053 Gm37131-201ENSMUST00000192502 1561 ntBASIC14.84□□□□□ -0.03
Scn11aQ9R053 Smarcb1-202ENSMUST00000121304 1622 ntAPPRIS ALT1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Scn11aQ9R053 Gm3830-201ENSMUST00000185540 1715 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
Scn11aQ9R053 Tspan32-202ENSMUST00000075172 1876 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
Scn11aQ9R053 Kcnip4-207ENSMUST00000176191 2116 ntTSL 5 BASIC14.84□□□□□ -0.03
Scn11aQ9R053 Tacr2-201ENSMUST00000020278 2258 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Scn11aQ9R053 2610037D02Rik-201ENSMUST00000180852 2449 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
Scn11aQ9R053 Enox1-201ENSMUST00000022589 3142 ntAPPRIS P2 TSL 1 (best) BASIC14.84□□□□□ -0.03
Scn11aQ9R053 Uba3-201ENSMUST00000089287 2257 ntAPPRIS P4 TSL 1 (best) BASIC14.83□□□□□ -0.03
Scn11aQ9R053 Slc7a3-201ENSMUST00000073927 2232 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
Retrieved 100 of 76,532 protein–RNA pairs in 40 ms