Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Senp3-201ENSMUST00000005336 2313 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Smc1aQ9CU62 Smpd3-201ENSMUST00000067512 5148 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Smc1aQ9CU62 Trim29-201ENSMUST00000034511 2735 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Smc1aQ9CU62 B3gat2-201ENSMUST00000063663 5655 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Smc1aQ9CU62 9130011E15Rik-201ENSMUST00000045396 2896 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
Smc1aQ9CU62 Ubxn10-203ENSMUST00000105811 2926 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Smc1aQ9CU62 Pcdh10-203ENSMUST00000171554 7273 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Smc1aQ9CU62 Gcdh-202ENSMUST00000109745 2114 ntAPPRIS ALT2 TSL 5 BASIC14.28□□□□□ -0.12
Smc1aQ9CU62 Ablim2-203ENSMUST00000114203 1333 ntTSL 5 BASIC14.28□□□□□ -0.12
Smc1aQ9CU62 Agbl3-202ENSMUST00000115012 790 ntTSL 3 BASIC14.28□□□□□ -0.12
Smc1aQ9CU62 Agbl3-203ENSMUST00000115014 805 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Smc1aQ9CU62 Trip4-201ENSMUST00000117083 1999 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Smc1aQ9CU62 Gm12050-201ENSMUST00000127483 615 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Smc1aQ9CU62 Gm15317-201ENSMUST00000129569 699 ntTSL 3 BASIC14.28□□□□□ -0.12
Smc1aQ9CU62 Pelp1-202ENSMUST00000135148 562 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Smc1aQ9CU62 Gm11754-201ENSMUST00000156576 661 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Smc1aQ9CU62 Dcdc2b-203ENSMUST00000179209 864 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
Smc1aQ9CU62 Hspb9-201ENSMUST00000017976 652 ntAPPRIS ALT2 BASIC14.28□□□□□ -0.12
Smc1aQ9CU62 Gm26880-201ENSMUST00000181610 1318 ntTSL 5 BASIC14.28□□□□□ -0.12
Smc1aQ9CU62 Dkkl1-204ENSMUST00000210741 662 ntAPPRIS ALT2 TSL 2 BASIC14.28□□□□□ -0.12
Smc1aQ9CU62 Hcfc1r1-201ENSMUST00000024697 946 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Smc1aQ9CU62 Exosc7-201ENSMUST00000026891 1053 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Smc1aQ9CU62 Car3-201ENSMUST00000029076 1679 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Smc1aQ9CU62 Lim2-201ENSMUST00000004732 884 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Smc1aQ9CU62 Pcdhb1-201ENSMUST00000052366 2588 ntAPPRIS P1 BASIC14.28□□□□□ -0.12
Smc1aQ9CU62 Cebpe-201ENSMUST00000064290 1241 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Smc1aQ9CU62 Ubqln1-202ENSMUST00000076454 3561 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
Smc1aQ9CU62 Gng8-201ENSMUST00000078182 910 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Smc1aQ9CU62 Trpt1-201ENSMUST00000088223 1142 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Smc1aQ9CU62 Polr2c-202ENSMUST00000211939 3881 ntTSL 2 BASIC14.28□□□□□ -0.12
Smc1aQ9CU62 Sfmbt1-206ENSMUST00000228006 3299 ntAPPRIS P1 BASIC14.28□□□□□ -0.12
Smc1aQ9CU62 Nisch-213ENSMUST00000168206 4990 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
Smc1aQ9CU62 Decr2-201ENSMUST00000040907 2187 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Smc1aQ9CU62 Qrich2-201ENSMUST00000093909 2156 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.12
Smc1aQ9CU62 Grid2ip-203ENSMUST00000120825 3865 ntTSL 5 BASIC14.27□□□□□ -0.12
Smc1aQ9CU62 Cacna2d1-209ENSMUST00000199704 3861 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
Smc1aQ9CU62 Rsbn1l-202ENSMUST00000196780 7651 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.12
Smc1aQ9CU62 Gm9866-202ENSMUST00000182473 1882 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
Smc1aQ9CU62 2310022A10Rik-204ENSMUST00000187032 1871 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.12
Smc1aQ9CU62 Mrgprh-201ENSMUST00000075296 1809 ntAPPRIS P1 BASIC14.27□□□□□ -0.12
Smc1aQ9CU62 Ap1s2-201ENSMUST00000033734 1785 ntAPPRIS ALT1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Smc1aQ9CU62 Mutyh-201ENSMUST00000102699 1654 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Smc1aQ9CU62 Bcl9l-201ENSMUST00000074989 5339 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.12
Smc1aQ9CU62 Olfr61-202ENSMUST00000210241 1348 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.12
Smc1aQ9CU62 Usp16-202ENSMUST00000119504 2562 ntTSL 5 BASIC14.27□□□□□ -0.13
Smc1aQ9CU62 Armc2-208ENSMUST00000162405 1135 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Smc1aQ9CU62 Crip2-206ENSMUST00000200380 864 ntTSL 3 BASIC14.27□□□□□ -0.13
Smc1aQ9CU62 Nme2-201ENSMUST00000021217 1012 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Smc1aQ9CU62 Gm18934-201ENSMUST00000216671 1044 ntBASIC14.27□□□□□ -0.13
Smc1aQ9CU62 Gm17330-201ENSMUST00000221047 165 ntBASIC14.27□□□□□ -0.13
Smc1aQ9CU62 AC131997.1-201ENSMUST00000228611 1229 ntBASIC14.27□□□□□ -0.13
Smc1aQ9CU62 Taldo1-201ENSMUST00000026576 1229 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Smc1aQ9CU62 Comt-201ENSMUST00000000335 1178 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Smc1aQ9CU62 Upk2-201ENSMUST00000047740 1083 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Smc1aQ9CU62 Gm17383-201ENSMUST00000078739 1041 ntBASIC14.27□□□□□ -0.13
Smc1aQ9CU62 Capn8-202ENSMUST00000168514 2483 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Smc1aQ9CU62 Slc13a2-201ENSMUST00000001122 2412 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Smc1aQ9CU62 Zfp207-201ENSMUST00000017567 2245 ntAPPRIS ALT1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Smc1aQ9CU62 Klhl38-201ENSMUST00000022985 2212 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Smc1aQ9CU62 Gm19817-201ENSMUST00000199764 2132 ntBASIC14.27□□□□□ -0.13
Smc1aQ9CU62 Mafk-202ENSMUST00000110836 3097 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.13
Smc1aQ9CU62 Slc27a2-201ENSMUST00000061491 2918 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Smc1aQ9CU62 Map7-202ENSMUST00000116259 3831 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.13
Smc1aQ9CU62 2810429I04Rik-203ENSMUST00000181708 4769 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Smc1aQ9CU62 Brdt-201ENSMUST00000031215 4745 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Smc1aQ9CU62 Runx1t1-204ENSMUST00000105566 6090 ntAPPRIS ALT1 TSL 5 BASIC14.27□□□□□ -0.13
Smc1aQ9CU62 Gm26819-201ENSMUST00000180656 5128 ntTSL 5 BASIC14.27□□□□□ -0.13
Smc1aQ9CU62 Cyb5rl-203ENSMUST00000106758 2516 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
Smc1aQ9CU62 Kcp-203ENSMUST00000101614 4885 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Smc1aQ9CU62 Fam214b-203ENSMUST00000107957 3234 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
Smc1aQ9CU62 Faap100-201ENSMUST00000026448 3193 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Smc1aQ9CU62 Gngt2-201ENSMUST00000036088 1587 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Smc1aQ9CU62 Tkfc-201ENSMUST00000037678 2253 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Smc1aQ9CU62 Tmem201-203ENSMUST00000105687 3697 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Smc1aQ9CU62 Scyl2-201ENSMUST00000092227 3566 ntAPPRIS ALT1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Smc1aQ9CU62 Sqle-201ENSMUST00000022977 2758 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Smc1aQ9CU62 AC137842.1-201ENSMUST00000227896 2064 ntBASIC14.26□□□□□ -0.13
Smc1aQ9CU62 Gsn-201ENSMUST00000028239 2653 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
Smc1aQ9CU62 4931409K22Rik-201ENSMUST00000088302 2613 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
Smc1aQ9CU62 Cacna2d1-203ENSMUST00000101581 3879 ntAPPRIS P2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Smc1aQ9CU62 Cacna2d1-206ENSMUST00000180204 3882 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Smc1aQ9CU62 Bcl2l1-202ENSMUST00000109820 2568 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Smc1aQ9CU62 Gsdmcl2-203ENSMUST00000185431 1911 ntBASIC14.26□□□□□ -0.13
Smc1aQ9CU62 Ighv7-3-201ENSMUST00000103461 361 ntAPPRIS P1 BASIC14.26□□□□□ -0.13
Smc1aQ9CU62 Gm14723-201ENSMUST00000118686 215 ntBASIC14.26□□□□□ -0.13
Smc1aQ9CU62 Dnase2a-206ENSMUST00000145292 678 ntTSL 5 BASIC14.26□□□□□ -0.13
Smc1aQ9CU62 Prss51-202ENSMUST00000165710 953 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Smc1aQ9CU62 Cox16-206ENSMUST00000168463 431 ntTSL 2 BASIC14.26□□□□□ -0.13
Smc1aQ9CU62 Synj2bp-205ENSMUST00000169158 691 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Smc1aQ9CU62 Gm27682-201ENSMUST00000183930 110 ntBASIC14.26□□□□□ -0.13
Smc1aQ9CU62 Gm38144-201ENSMUST00000192790 465 ntBASIC14.26□□□□□ -0.13
Smc1aQ9CU62 Gm38002-201ENSMUST00000193255 180 ntBASIC14.26□□□□□ -0.13
Smc1aQ9CU62 Myl10-202ENSMUST00000196068 911 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Smc1aQ9CU62 Myl10-203ENSMUST00000196436 598 ntTSL 3 BASIC14.26□□□□□ -0.13
Smc1aQ9CU62 Myl10-204ENSMUST00000197186 607 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Smc1aQ9CU62 Gm34549-203ENSMUST00000208300 896 ntTSL 5 BASIC14.26□□□□□ -0.13
Smc1aQ9CU62 Gm45564-201ENSMUST00000210460 530 ntTSL 5 BASIC14.26□□□□□ -0.13
Smc1aQ9CU62 Gm45892-201ENSMUST00000212627 273 ntTSL 5 BASIC14.26□□□□□ -0.13
Smc1aQ9CU62 Tpd52l1-205ENSMUST00000215515 857 ntTSL 2 BASIC14.26□□□□□ -0.13
Smc1aQ9CU62 Gm19309-201ENSMUST00000218295 205 ntBASIC14.26□□□□□ -0.13
Retrieved 100 of 76,532 protein–RNA pairs in 194.1 ms