Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Gm4366-201ENSMUST00000201488 1342 ntBASIC15.02■□□□□ -0
Trim56Q80VI1 Ranbp17-202ENSMUST00000102815 5001 ntAPPRIS P2 TSL 1 (best) BASIC15.02■□□□□ -0
Trim56Q80VI1 Klhl15-201ENSMUST00000096369 3944 ntTSL 1 (best) BASIC15.02■□□□□ -0
Trim56Q80VI1 Rnf4-201ENSMUST00000030992 2895 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Trim56Q80VI1 Myc-205ENSMUST00000161976 2338 ntTSL 1 (best) BASIC15.02■□□□□ -0
Trim56Q80VI1 Myc-201ENSMUST00000022971 2338 ntAPPRIS ALT1 TSL 1 (best) BASIC15.02■□□□□ -0
Trim56Q80VI1 Ylpm1-207ENSMUST00000168977 4893 ntAPPRIS ALT2 TSL 5 BASIC15.02■□□□□ -0
Trim56Q80VI1 Gm11597-201ENSMUST00000121423 964 ntBASIC15.02■□□□□ -0
Trim56Q80VI1 Gm5863-201ENSMUST00000121760 1008 ntBASIC15.02■□□□□ -0
Trim56Q80VI1 Bcas1os1-201ENSMUST00000133586 1239 ntTSL 1 (best) BASIC15.02■□□□□ -0
Trim56Q80VI1 Gm2991-201ENSMUST00000173338 480 ntBASIC15.02■□□□□ -0
Trim56Q80VI1 Gm26542-201ENSMUST00000180443 1235 ntTSL 1 (best) BASIC15.02■□□□□ -0
Trim56Q80VI1 Olfr1414-202ENSMUST00000189174 1159 ntAPPRIS P1 TSL 3 BASIC15.02■□□□□ -0
Trim56Q80VI1 Brsk1-205ENSMUST00000206024 1216 ntTSL 1 (best) BASIC15.02■□□□□ -0
Trim56Q80VI1 Cryba4-201ENSMUST00000086629 746 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Trim56Q80VI1 Slc35d1-203ENSMUST00000150285 4242 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
Trim56Q80VI1 Gpr19-203ENSMUST00000111932 1711 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
Trim56Q80VI1 Arhgef39-201ENSMUST00000054538 1659 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
Trim56Q80VI1 Gm37737-201ENSMUST00000195013 1638 ntBASIC15.02□□□□□ -0.01
Trim56Q80VI1 Acap2-201ENSMUST00000058033 6493 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
Trim56Q80VI1 Itga3-203ENSMUST00000120375 4697 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02□□□□□ -0.01
Trim56Q80VI1 Slc34a1-201ENSMUST00000057167 2433 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
Trim56Q80VI1 Ptpn7-203ENSMUST00000187985 1990 ntAPPRIS P1 TSL 5 BASIC15.02□□□□□ -0.01
Trim56Q80VI1 Ltbp4-201ENSMUST00000038618 5386 ntAPPRIS P3 TSL 1 (best) BASIC15.02□□□□□ -0.01
Trim56Q80VI1 Acadl-201ENSMUST00000027153 1916 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
Trim56Q80VI1 Otx1-201ENSMUST00000006071 2789 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
Trim56Q80VI1 Gm19221-201ENSMUST00000221827 1477 ntBASIC15.01□□□□□ -0.01
Trim56Q80VI1 Zfp365-201ENSMUST00000064656 4259 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Trim56Q80VI1 Mtif3-202ENSMUST00000066675 4927 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Trim56Q80VI1 Fam13b-201ENSMUST00000040506 3343 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Trim56Q80VI1 Tmeff2-201ENSMUST00000081851 3343 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Trim56Q80VI1 Mark2-215ENSMUST00000168872 2124 ntAPPRIS ALT2 TSL 5 BASIC15.01□□□□□ -0.01
Trim56Q80VI1 Ints5-201ENSMUST00000096249 3294 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Trim56Q80VI1 AC110816.2-201ENSMUST00000220360 1323 ntTSL 5 BASIC15.01□□□□□ -0.01
Trim56Q80VI1 Mat2b-202ENSMUST00000101347 2053 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
Trim56Q80VI1 Gtf2ird1-201ENSMUST00000073161 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
Trim56Q80VI1 Atxn7l3b-201ENSMUST00000099276 3566 ntAPPRIS P1 BASIC15.01□□□□□ -0.01
Trim56Q80VI1 Atp6v1h-201ENSMUST00000044369 2049 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Trim56Q80VI1 AI597479-201ENSMUST00000010434 3458 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Trim56Q80VI1 Prex1-203ENSMUST00000109246 2386 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
Trim56Q80VI1 Trav4d-3-201ENSMUST00000103592 331 ntAPPRIS P1 BASIC15.01□□□□□ -0.01
Trim56Q80VI1 Trav4d-4-201ENSMUST00000103600 354 ntAPPRIS P1 BASIC15.01□□□□□ -0.01
Trim56Q80VI1 Trav4n-3-201ENSMUST00000103618 331 ntAPPRIS P1 BASIC15.01□□□□□ -0.01
Trim56Q80VI1 Trav4n-4-201ENSMUST00000103627 354 ntAPPRIS P1 BASIC15.01□□□□□ -0.01
Trim56Q80VI1 Trav4-3-201ENSMUST00000103655 411 ntAPPRIS P1 BASIC15.01□□□□□ -0.01
Trim56Q80VI1 Trav4-4-dv10-201ENSMUST00000103663 361 ntAPPRIS P1 BASIC15.01□□□□□ -0.01
Trim56Q80VI1 Gm25214-201ENSMUST00000104573 129 ntBASIC15.01□□□□□ -0.01
Trim56Q80VI1 Park7-202ENSMUST00000105673 919 ntAPPRIS P1 TSL 5 BASIC15.01□□□□□ -0.01
Trim56Q80VI1 Gm12241-201ENSMUST00000118330 726 ntBASIC15.01□□□□□ -0.01
Trim56Q80VI1 0610037L13Rik-205ENSMUST00000119394 741 ntTSL 3 BASIC15.01□□□□□ -0.01
Trim56Q80VI1 Gm13315-201ENSMUST00000120376 991 ntBASIC15.01□□□□□ -0.01
Trim56Q80VI1 Gm8908-201ENSMUST00000121633 1024 ntBASIC15.01□□□□□ -0.01
Trim56Q80VI1 Msrb3-202ENSMUST00000130950 561 ntTSL 3 BASIC15.01□□□□□ -0.01
Trim56Q80VI1 Gm2310-201ENSMUST00000179217 1131 ntAPPRIS P1 TSL 5 BASIC15.01□□□□□ -0.01
Trim56Q80VI1 1700031P21Rik-203ENSMUST00000191400 466 ntTSL 3 BASIC15.01□□□□□ -0.01
Trim56Q80VI1 Gm19963-201ENSMUST00000208413 1255 ntBASIC15.01□□□□□ -0.01
Trim56Q80VI1 Timm9-203ENSMUST00000220482 859 ntAPPRIS P1 TSL 3 BASIC15.01□□□□□ -0.01
Trim56Q80VI1 H2-Oa-201ENSMUST00000025192 1088 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Trim56Q80VI1 Col7a1-202ENSMUST00000112070 9250 ntAPPRIS P1 TSL 5 BASIC15.01□□□□□ -0.01
Trim56Q80VI1 Tpr-203ENSMUST00000124973 7430 ntAPPRIS P2 TSL 1 (best) BASIC15.01□□□□□ -0.01
Trim56Q80VI1 F630040K05Rik-202ENSMUST00000180558 2633 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
Trim56Q80VI1 Timp3-201ENSMUST00000020234 4722 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Trim56Q80VI1 Npc2-201ENSMUST00000021668 3299 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Trim56Q80VI1 Slc25a25-201ENSMUST00000028160 3294 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
Trim56Q80VI1 Mid1-215ENSMUST00000171433 2546 ntAPPRIS P1 TSL 5 BASIC15.01□□□□□ -0.01
Trim56Q80VI1 Ssc5d-201ENSMUST00000057612 4348 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Trim56Q80VI1 Fam46a-201ENSMUST00000034802 5479 ntAPPRIS P3 TSL 3 BASIC15□□□□□ -0.01
Trim56Q80VI1 Hs3st1-202ENSMUST00000117944 1686 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Trim56Q80VI1 Fcgr1-201ENSMUST00000029748 2589 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Trim56Q80VI1 Kctd11-201ENSMUST00000050555 3146 ntAPPRIS P1 BASIC15□□□□□ -0.01
Trim56Q80VI1 Gm20633-201ENSMUST00000176742 2831 ntBASIC15□□□□□ -0.01
Trim56Q80VI1 Mcm8-202ENSMUST00000066559 3397 ntAPPRIS P3 TSL 1 (best) BASIC15□□□□□ -0.01
Trim56Q80VI1 Gm10434-201ENSMUST00000101158 471 ntBASIC15□□□□□ -0.01
Trim56Q80VI1 Tnfrsf18-202ENSMUST00000103173 1189 ntAPPRIS P4 TSL 1 (best) BASIC15□□□□□ -0.01
Trim56Q80VI1 Ypel3-202ENSMUST00000106356 785 ntAPPRIS P1 TSL 5 BASIC15□□□□□ -0.01
Trim56Q80VI1 Etfrf1-202ENSMUST00000111719 968 ntAPPRIS P1 TSL 5 BASIC15□□□□□ -0.01
Trim56Q80VI1 Gm11531-201ENSMUST00000117614 555 ntBASIC15□□□□□ -0.01
Trim56Q80VI1 Gm13342-201ENSMUST00000121055 207 ntBASIC15□□□□□ -0.01
Trim56Q80VI1 Acyp1-204ENSMUST00000121930 634 ntTSL 2 BASIC15□□□□□ -0.01
Trim56Q80VI1 Gm12678-201ENSMUST00000154177 692 ntTSL 1 (best) BASIC15□□□□□ -0.01
Trim56Q80VI1 Gm17344-201ENSMUST00000171173 1159 ntTSL 1 (best) BASIC15□□□□□ -0.01
Trim56Q80VI1 Gm26787-201ENSMUST00000180474 608 ntTSL 1 (best) BASIC15□□□□□ -0.01
Trim56Q80VI1 Gm2546-201ENSMUST00000182630 991 ntBASIC15□□□□□ -0.01
Trim56Q80VI1 1700120C18Rik-201ENSMUST00000182952 985 ntTSL 1 (best) BASIC15□□□□□ -0.01
Trim56Q80VI1 Gm4691-202ENSMUST00000182989 885 ntTSL 5 BASIC15□□□□□ -0.01
Trim56Q80VI1 1700065D16Rik-203ENSMUST00000189279 393 ntTSL 2 BASIC15□□□□□ -0.01
Trim56Q80VI1 Gm28085-201ENSMUST00000189281 1137 ntTSL 1 (best) BASIC15□□□□□ -0.01
Trim56Q80VI1 2900093K20Rik-201ENSMUST00000190930 567 ntBASIC15□□□□□ -0.01
Trim56Q80VI1 Gm43758-201ENSMUST00000199500 367 ntBASIC15□□□□□ -0.01
Trim56Q80VI1 Il20ra-201ENSMUST00000020185 2105 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Trim56Q80VI1 Gm44172-201ENSMUST00000203903 1235 ntTSL 1 (best) BASIC15□□□□□ -0.01
Trim56Q80VI1 Gm5950-201ENSMUST00000213337 772 ntBASIC15□□□□□ -0.01
Trim56Q80VI1 AC158605.1-202ENSMUST00000217860 540 ntTSL 2 BASIC15□□□□□ -0.01
Trim56Q80VI1 Rps12-203ENSMUST00000218107 584 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Trim56Q80VI1 Gm45925-201ENSMUST00000218882 744 ntBASIC15□□□□□ -0.01
Trim56Q80VI1 Ddit3-201ENSMUST00000026475 890 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Trim56Q80VI1 Ttc4-201ENSMUST00000026480 2121 ntAPPRIS P2 TSL 1 (best) BASIC15□□□□□ -0.01
Trim56Q80VI1 Tmem247-201ENSMUST00000042172 752 ntTSL 1 (best) BASIC15□□□□□ -0.01
Trim56Q80VI1 Itln1-201ENSMUST00000043094 1141 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Trim56Q80VI1 9430041J12Rik-201ENSMUST00000050989 534 ntBASIC15□□□□□ -0.01
Retrieved 100 of 76,532 protein–RNA pairs in 69.5 ms