Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Gm28198-201ENSMUST00000190938 471 ntTSL 3 BASIC12.42□□□□□ -0.42
Col28a1Q2UY11 Fau-201ENSMUST00000043074 574 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Col28a1Q2UY11 Hist1h3b-201ENSMUST00000091703 620 ntAPPRIS P1 BASIC12.42□□□□□ -0.42
Col28a1Q2UY11 Rbak-202ENSMUST00000165318 3480 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Col28a1Q2UY11 Cd33-202ENSMUST00000039861 1791 ntAPPRIS P3 TSL 1 (best) BASIC12.42□□□□□ -0.42
Col28a1Q2UY11 Fam198a-203ENSMUST00000214536 2789 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Col28a1Q2UY11 Pabpc2-201ENSMUST00000063219 2586 ntAPPRIS P1 BASIC12.42□□□□□ -0.42
Col28a1Q2UY11 Fbxl12-201ENSMUST00000086458 2056 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Col28a1Q2UY11 Fbxl12-202ENSMUST00000086459 2086 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Col28a1Q2UY11 Rita1-201ENSMUST00000031599 1573 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Col28a1Q2UY11 Rassf8-201ENSMUST00000032388 1733 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Col28a1Q2UY11 AC157950.1-201ENSMUST00000217561 2168 ntBASIC12.42□□□□□ -0.42
Col28a1Q2UY11 Usp19-210ENSMUST00000193678 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC12.41□□□□□ -0.42
Col28a1Q2UY11 Krit1-201ENSMUST00000080085 2930 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Col28a1Q2UY11 Iba57-201ENSMUST00000054523 4021 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Col28a1Q2UY11 Cep41-203ENSMUST00000115131 2256 ntAPPRIS ALT2 TSL 5 BASIC12.41□□□□□ -0.42
Col28a1Q2UY11 Slc6a4-201ENSMUST00000021195 2725 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Col28a1Q2UY11 Pank4-202ENSMUST00000070953 2706 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
Col28a1Q2UY11 Sirt3-201ENSMUST00000026559 1461 ntAPPRIS P2 TSL 1 (best) BASIC12.41□□□□□ -0.42
Col28a1Q2UY11 Ascc1-201ENSMUST00000050516 1450 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Col28a1Q2UY11 Cog6-201ENSMUST00000036665 3182 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Col28a1Q2UY11 AC166574.4-201ENSMUST00000227165 1937 ntBASIC12.41□□□□□ -0.42
Col28a1Q2UY11 Pex19-201ENSMUST00000075895 1917 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Col28a1Q2UY11 Wnt16-202ENSMUST00000128245 3285 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
Col28a1Q2UY11 Pdp1-205ENSMUST00000108301 2635 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
Col28a1Q2UY11 Acoxl-202ENSMUST00000110344 1573 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
Col28a1Q2UY11 Mafk-202ENSMUST00000110836 3097 ntAPPRIS P1 TSL 5 BASIC12.41□□□□□ -0.42
Col28a1Q2UY11 Ube2m-208ENSMUST00000165394 1228 ntTSL 5 BASIC12.41□□□□□ -0.42
Col28a1Q2UY11 1600014C23Rik-201ENSMUST00000178179 518 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Col28a1Q2UY11 4930449I04Rik-201ENSMUST00000198191 1123 ntBASIC12.41□□□□□ -0.42
Col28a1Q2UY11 Trpv6-203ENSMUST00000201471 2304 ntAPPRIS P2 TSL 1 (best) BASIC12.41□□□□□ -0.42
Col28a1Q2UY11 Sftpa1-201ENSMUST00000022314 851 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Col28a1Q2UY11 AC096628.2-201ENSMUST00000225443 1413 ntBASIC12.41□□□□□ -0.42
Col28a1Q2UY11 AC150560.1-201ENSMUST00000227731 1187 ntBASIC12.41□□□□□ -0.42
Col28a1Q2UY11 Snx24-201ENSMUST00000025417 994 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Col28a1Q2UY11 Fggy-202ENSMUST00000079223 1891 ntAPPRIS P1 TSL 5 BASIC12.41□□□□□ -0.42
Col28a1Q2UY11 Trpc2-201ENSMUST00000124189 2874 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Col28a1Q2UY11 Tmc8-204ENSMUST00000119455 2736 ntAPPRIS ALT2 TSL 1 (best) BASIC12.41□□□□□ -0.42
Col28a1Q2UY11 Trpc7-208ENSMUST00000174457 2424 ntTSL 5 BASIC12.41□□□□□ -0.42
Col28a1Q2UY11 Snrk-203ENSMUST00000120173 4758 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Col28a1Q2UY11 Dnajc14-207ENSMUST00000219508 2298 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Col28a1Q2UY11 Olfm2-201ENSMUST00000034692 1836 ntAPPRIS P2 TSL 1 (best) BASIC12.41□□□□□ -0.42
Col28a1Q2UY11 Etv3-205ENSMUST00000170036 5127 ntAPPRIS P2 TSL 1 (best) BASIC12.41□□□□□ -0.42
Col28a1Q2UY11 Cad-201ENSMUST00000013773 7137 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Col28a1Q2UY11 Smg8-201ENSMUST00000020801 3218 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Col28a1Q2UY11 Brwd1-202ENSMUST00000099502 8547 ntAPPRIS P2 TSL 1 (best) BASIC12.41□□□□□ -0.42
Col28a1Q2UY11 Cwc27-201ENSMUST00000022228 2071 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Col28a1Q2UY11 Osbp2-203ENSMUST00000102950 3077 ntAPPRIS ALT2 TSL 1 (best) BASIC12.41□□□□□ -0.42
Col28a1Q2UY11 Myh13-202ENSMUST00000108684 6062 ntAPPRIS P1 TSL 5 BASIC12.41□□□□□ -0.42
Col28a1Q2UY11 Spcs3-201ENSMUST00000067476 3466 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Col28a1Q2UY11 Msi2-203ENSMUST00000107909 6436 ntAPPRIS ALT2 TSL 1 (best) BASIC12.4□□□□□ -0.42
Col28a1Q2UY11 Pcdh8-204ENSMUST00000195355 3704 ntAPPRIS ALT2 TSL 1 (best) BASIC12.4□□□□□ -0.42
Col28a1Q2UY11 Knop1-203ENSMUST00000106549 1467 ntAPPRIS ALT2 TSL 1 (best) BASIC12.4□□□□□ -0.42
Col28a1Q2UY11 Lat2-205ENSMUST00000200998 1481 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Col28a1Q2UY11 Gm5779-202ENSMUST00000219564 1477 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
Col28a1Q2UY11 Smpd3-201ENSMUST00000067512 5148 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Col28a1Q2UY11 Hars2-201ENSMUST00000019287 2002 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
Col28a1Q2UY11 Dcaf10-204ENSMUST00000155551 7250 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Col28a1Q2UY11 Nfe2l1-210ENSMUST00000167110 3547 ntAPPRIS ALT2 TSL 2 BASIC12.4□□□□□ -0.42
Col28a1Q2UY11 Capn2-201ENSMUST00000068505 3225 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Col28a1Q2UY11 Cdk10-212ENSMUST00000213005 1580 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
Col28a1Q2UY11 Gtf2ird1-202ENSMUST00000074114 3330 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
Col28a1Q2UY11 Ebf3-203ENSMUST00000168203 3724 ntAPPRIS ALT1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Col28a1Q2UY11 Tmem176b-201ENSMUST00000101429 1238 ntAPPRIS P1 TSL 5 BASIC12.4□□□□□ -0.42
Col28a1Q2UY11 Cntf-201ENSMUST00000112933 1073 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Col28a1Q2UY11 Rapgef3os2-201ENSMUST00000124374 920 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
Col28a1Q2UY11 Gm833-201ENSMUST00000143133 884 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
Col28a1Q2UY11 Slc2a9-207ENSMUST00000143758 1296 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
Col28a1Q2UY11 Gm14224-201ENSMUST00000147187 864 ntTSL 3 BASIC12.4□□□□□ -0.42
Col28a1Q2UY11 2810429I04Rik-210ENSMUST00000189464 868 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
Col28a1Q2UY11 Gm42921-201ENSMUST00000196670 655 ntTSL 2 BASIC12.4□□□□□ -0.42
Col28a1Q2UY11 Rpl18-208ENSMUST00000211061 552 ntTSL 5 BASIC12.4□□□□□ -0.42
Col28a1Q2UY11 AC166349.1-201ENSMUST00000220866 695 ntBASIC12.4□□□□□ -0.42
Col28a1Q2UY11 Tmem179-202ENSMUST00000222836 521 ntTSL 5 BASIC12.4□□□□□ -0.42
Col28a1Q2UY11 AC099934.3-201ENSMUST00000223192 1147 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Col28a1Q2UY11 1700123K08Rik-201ENSMUST00000031501 1047 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Col28a1Q2UY11 Pja1-204ENSMUST00000113797 1676 ntAPPRIS ALT2 TSL 2 BASIC12.4□□□□□ -0.42
Col28a1Q2UY11 2810407A14Rik-201ENSMUST00000069809 1699 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
Col28a1Q2UY11 Ibsp-201ENSMUST00000031246 2068 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Col28a1Q2UY11 Gm5936-201ENSMUST00000114116 2857 ntAPPRIS P1 TSL 3 BASIC12.4□□□□□ -0.42
Col28a1Q2UY11 Gm5640-201ENSMUST00000114119 2861 ntAPPRIS P1 TSL 3 BASIC12.4□□□□□ -0.42
Col28a1Q2UY11 DXBay18-201ENSMUST00000080324 2862 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Col28a1Q2UY11 Gm14685-201ENSMUST00000088459 2864 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Col28a1Q2UY11 Tex10-201ENSMUST00000030030 3102 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Col28a1Q2UY11 Snap23-203ENSMUST00000116437 2730 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
Col28a1Q2UY11 Sstr5-201ENSMUST00000051864 2733 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Col28a1Q2UY11 Tmem115-201ENSMUST00000010189 2194 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Col28a1Q2UY11 Slc23a4-201ENSMUST00000044387 2175 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
Col28a1Q2UY11 Kif2c-201ENSMUST00000065896 2842 ntAPPRIS P3 TSL 1 (best) BASIC12.4□□□□□ -0.42
Col28a1Q2UY11 Kif1a-202ENSMUST00000112958 5931 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
Col28a1Q2UY11 Fcrls-201ENSMUST00000090986 2273 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Col28a1Q2UY11 Whamm-203ENSMUST00000209044 1879 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
Col28a1Q2UY11 F7-201ENSMUST00000033820 1859 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Col28a1Q2UY11 Kdm5b-201ENSMUST00000047714 8714 ntAPPRIS P2 TSL 1 (best) BASIC12.4□□□□□ -0.42
Col28a1Q2UY11 Aph1a-201ENSMUST00000015894 2863 ntTSL 1 (best) BASIC12.4□□□□□ -0.43
Col28a1Q2UY11 Oprd1-201ENSMUST00000056336 4021 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.43
Col28a1Q2UY11 Prom2-201ENSMUST00000028855 4796 ntAPPRIS P3 TSL 1 (best) BASIC12.39□□□□□ -0.43
Col28a1Q2UY11 Ralgps2-211ENSMUST00000190648 2498 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Col28a1Q2UY11 Arntl-206ENSMUST00000211770 2464 ntTSL 5 BASIC12.39□□□□□ -0.43
Col28a1Q2UY11 Xpo1-201ENSMUST00000020538 5145 ntAPPRIS P1 TSL 5 BASIC12.39□□□□□ -0.43
Retrieved 100 of 76,532 protein–RNA pairs in 46.1 ms