Protein–RNA interactions for Protein: P53784

Sox3, Transcription factor SOX-3, mousemouse

Predictions only

Length 375 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox3P53784 Myh14-203ENSMUST00000107900 6400 ntAPPRIS ALT2 TSL 5 BASIC12.25□□□□□ -0.45
Sox3P53784 Gm42480-201ENSMUST00000198434 2595 ntBASIC12.25□□□□□ -0.45
Sox3P53784 Snap23-202ENSMUST00000110711 2723 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Sox3P53784 Sfxn3-202ENSMUST00000084493 2843 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Sox3P53784 Asap1-217ENSMUST00000177371 6164 ntAPPRIS ALT2 TSL 1 (best) BASIC12.25□□□□□ -0.45
Sox3P53784 AC159196.2-201ENSMUST00000224082 1622 ntBASIC12.25□□□□□ -0.45
Sox3P53784 Gm44241-201ENSMUST00000203230 1662 ntBASIC12.25□□□□□ -0.45
Sox3P53784 Gm35339-201ENSMUST00000208833 5090 ntAPPRIS P1 TSL 5 BASIC12.25□□□□□ -0.45
Sox3P53784 Cnbd2-202ENSMUST00000073942 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC12.25□□□□□ -0.45
Sox3P53784 Pdpn-201ENSMUST00000030317 1817 ntAPPRIS P3 TSL 1 (best) BASIC12.25□□□□□ -0.45
Sox3P53784 Slc31a2-201ENSMUST00000084530 1820 ntAPPRIS P3 TSL 1 (best) BASIC12.25□□□□□ -0.45
Sox3P53784 Rap1gds1-202ENSMUST00000098574 3669 ntAPPRIS P3 TSL 1 (best) BASIC12.25□□□□□ -0.45
Sox3P53784 Atat1-201ENSMUST00000056034 1930 ntAPPRIS P3 TSL 1 (best) BASIC12.25□□□□□ -0.45
Sox3P53784 2310007B03Rik-201ENSMUST00000043718 2299 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Sox3P53784 Oxr1-204ENSMUST00000110297 4596 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Sox3P53784 AC125108.1-201ENSMUST00000218986 2330 ntBASIC12.25□□□□□ -0.45
Sox3P53784 Ptprk-203ENSMUST00000218359 4669 ntAPPRIS ALT2 TSL 1 (best) BASIC12.25□□□□□ -0.45
Sox3P53784 Ncoa7-201ENSMUST00000068567 5105 ntAPPRIS P3 TSL 5 BASIC12.25□□□□□ -0.45
Sox3P53784 Epb41-203ENSMUST00000084253 5141 ntAPPRIS ALT2 TSL 1 (best) BASIC12.25□□□□□ -0.45
Sox3P53784 Dync1i1-204ENSMUST00000115559 2599 ntAPPRIS P3 TSL 1 (best) BASIC12.25□□□□□ -0.45
Sox3P53784 Ntsr1-202ENSMUST00000170448 2594 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Sox3P53784 Mul1-202ENSMUST00000105813 3944 ntTSL 5 BASIC12.24□□□□□ -0.45
Sox3P53784 Cacna2d1-201ENSMUST00000039370 3933 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Sox3P53784 Rtn4-203ENSMUST00000102841 4060 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Sox3P53784 Arhgef2-219ENSMUST00000176500 4492 ntAPPRIS ALT2 TSL 5 BASIC12.24□□□□□ -0.45
Sox3P53784 Setdb1-203ENSMUST00000107171 4573 ntAPPRIS ALT2 TSL 1 (best) BASIC12.24□□□□□ -0.45
Sox3P53784 Ahdc1-201ENSMUST00000044521 6105 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Sox3P53784 Epb41l5-208ENSMUST00000191046 6870 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Sox3P53784 Ighv2-9-201ENSMUST00000103451 362 ntAPPRIS P1 BASIC12.24□□□□□ -0.45
Sox3P53784 Prr15l-203ENSMUST00000107633 930 ntAPPRIS P1 TSL 2 BASIC12.24□□□□□ -0.45
Sox3P53784 Myh10-204ENSMUST00000108673 1315 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Sox3P53784 Nr3c1-203ENSMUST00000115567 6436 ntAPPRIS P2 TSL 1 (best) BASIC12.24□□□□□ -0.45
Sox3P53784 Gm12715-201ENSMUST00000121430 1128 ntBASIC12.24□□□□□ -0.45
Sox3P53784 Endov-204ENSMUST00000129327 1184 ntTSL 5 BASIC12.24□□□□□ -0.45
Sox3P53784 G630018N14Rik-201ENSMUST00000135656 1231 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Sox3P53784 Gstt3-201ENSMUST00000001715 1880 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Sox3P53784 Ska1-202ENSMUST00000177604 2605 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Sox3P53784 Gm29585-203ENSMUST00000188089 835 ntTSL 5 BASIC12.24□□□□□ -0.45
Sox3P53784 Gimap3-202ENSMUST00000204036 2145 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Sox3P53784 Plin1-203ENSMUST00000205413 1294 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Sox3P53784 Gnb5-202ENSMUST00000213990 1803 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Sox3P53784 Rnf26-205ENSMUST00000215685 1804 ntTSL 5 BASIC12.24□□□□□ -0.45
Sox3P53784 AC160029.2-201ENSMUST00000218285 548 ntTSL 3 BASIC12.24□□□□□ -0.45
Sox3P53784 Gm40437-201ENSMUST00000222338 767 ntTSL 5 BASIC12.24□□□□□ -0.45
Sox3P53784 Bcl2l2-201ENSMUST00000022806 3509 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Sox3P53784 Wfdc1-201ENSMUST00000024107 1371 ntAPPRIS P2 TSL 1 (best) BASIC12.24□□□□□ -0.45
Sox3P53784 Hcfc1r1-201ENSMUST00000024697 946 ntAPPRIS P2 TSL 1 (best) BASIC12.24□□□□□ -0.45
Sox3P53784 Slc26a5-201ENSMUST00000030878 2962 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Sox3P53784 Prrc2b-201ENSMUST00000036691 8612 ntAPPRIS P3 TSL 1 (best) BASIC12.24□□□□□ -0.45
Sox3P53784 Fam92b-201ENSMUST00000048786 1187 ntAPPRIS P1 TSL 5 BASIC12.24□□□□□ -0.45
Sox3P53784 Cd80-201ENSMUST00000099816 1701 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Sox3P53784 Crybg1-202ENSMUST00000200401 7525 ntAPPRIS ALT2 TSL 5 BASIC12.24□□□□□ -0.45
Sox3P53784 Kif1c-204ENSMUST00000137119 6596 ntAPPRIS P2 TSL 5 BASIC12.24□□□□□ -0.45
Sox3P53784 Nbeal2-210ENSMUST00000167320 8803 ntAPPRIS P2 TSL 1 (best) BASIC12.24□□□□□ -0.45
Sox3P53784 Fam13c-202ENSMUST00000105436 3380 ntAPPRIS ALT2 TSL 5 BASIC12.24□□□□□ -0.45
Sox3P53784 0610009O20Rik-201ENSMUST00000025314 2404 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Sox3P53784 Stx3-203ENSMUST00000075304 2430 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Sox3P53784 Usp19-204ENSMUST00000178075 4512 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.45
Sox3P53784 Usp19-202ENSMUST00000085044 4520 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.45
Sox3P53784 Tmem206-201ENSMUST00000027940 2246 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Sox3P53784 Gm16010-202ENSMUST00000145410 4427 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Sox3P53784 Gm14342-201ENSMUST00000137629 2119 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Sox3P53784 C030005K06Rik-201ENSMUST00000129164 2076 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Sox3P53784 Lrrc34-201ENSMUST00000029252 1891 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Sox3P53784 Usp10-210ENSMUST00000144458 3726 ntAPPRIS P3 TSL 1 (best) BASIC12.23□□□□□ -0.45
Sox3P53784 Sh3bp4-201ENSMUST00000066279 4995 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Sox3P53784 Glis3-202ENSMUST00000112612 3016 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.45
Sox3P53784 Oas1f-201ENSMUST00000057814 1480 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Sox3P53784 6030466F02Rik-201ENSMUST00000212339 1434 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Sox3P53784 Hlf-201ENSMUST00000004051 5642 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Sox3P53784 Ccdc85a-204ENSMUST00000109502 5220 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Sox3P53784 B230369F24Rik-201ENSMUST00000141846 2560 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Sox3P53784 Timm10-202ENSMUST00000111631 564 ntAPPRIS P1 TSL 3 BASIC12.23□□□□□ -0.45
Sox3P53784 Stpg3-202ENSMUST00000114363 1234 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.45
Sox3P53784 Gm11439-201ENSMUST00000118598 409 ntBASIC12.23□□□□□ -0.45
Sox3P53784 Gm11591-201ENSMUST00000120063 702 ntBASIC12.23□□□□□ -0.45
Sox3P53784 Tex9-206ENSMUST00000183574 1264 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.45
Sox3P53784 2010010A06Rik-201ENSMUST00000185628 258 ntBASIC12.23□□□□□ -0.45
Sox3P53784 Gm2453-202ENSMUST00000195508 568 ntTSL 3 BASIC12.23□□□□□ -0.45
Sox3P53784 Gm8099-201ENSMUST00000200510 742 ntBASIC12.23□□□□□ -0.45
Sox3P53784 Gm38804-201ENSMUST00000203998 767 ntTSL 3 BASIC12.23□□□□□ -0.45
Sox3P53784 1700011D18Rik-201ENSMUST00000205762 277 ntBASIC12.23□□□□□ -0.45
Sox3P53784 Gm18212-201ENSMUST00000211678 889 ntBASIC12.23□□□□□ -0.45
Sox3P53784 Gm19208-201ENSMUST00000213861 912 ntBASIC12.23□□□□□ -0.45
Sox3P53784 Ift43-205ENSMUST00000222821 783 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.45
Sox3P53784 Fam96a-201ENSMUST00000034945 1240 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Sox3P53784 Otos-201ENSMUST00000053144 704 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Sox3P53784 Saa3-201ENSMUST00000006956 555 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Sox3P53784 Nanos3-201ENSMUST00000070102 730 ntAPPRIS P2 TSL 1 (best) BASIC12.23□□□□□ -0.45
Sox3P53784 Zfp932-201ENSMUST00000099484 451 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Sox3P53784 Ankmy2-201ENSMUST00000041640 2456 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Sox3P53784 Naaladl1-201ENSMUST00000044451 2491 ntAPPRIS P1 TSL 2 BASIC12.23□□□□□ -0.45
Sox3P53784 Elk1-201ENSMUST00000009550 3548 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Sox3P53784 Kifc1-201ENSMUST00000114361 2260 ntAPPRIS ALT2 TSL 5 BASIC12.23□□□□□ -0.45
Sox3P53784 Tesmin-203ENSMUST00000142193 2279 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.45
Sox3P53784 Ctps2-206ENSMUST00000112303 3289 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Sox3P53784 Cops7b-202ENSMUST00000121534 5383 ntAPPRIS P1 TSL 5 BASIC12.23□□□□□ -0.45
Sox3P53784 Nif3l1-206ENSMUST00000171597 2098 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Sox3P53784 Acbd5-213ENSMUST00000227809 1986 ntAPPRIS ALT2 BASIC12.23□□□□□ -0.45
Sox3P53784 Ap1s2-201ENSMUST00000033734 1785 ntAPPRIS ALT1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Retrieved 100 of 76,532 protein–RNA pairs in 65.5 ms