Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Ptp4a1-201ENSMUST00000027232 4145 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Sh3rf1Q69ZI1 Gm7104-201ENSMUST00000179741 2532 ntBASIC12.98□□□□□ -0.33
Sh3rf1Q69ZI1 Prkcd-202ENSMUST00000112202 2005 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Sh3rf1Q69ZI1 Gm17705-201ENSMUST00000172285 1555 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Sh3rf1Q69ZI1 Pak6-202ENSMUST00000110853 3677 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Sh3rf1Q69ZI1 Chst4-201ENSMUST00000109222 1942 ntAPPRIS P2 TSL 1 (best) BASIC12.98□□□□□ -0.33
Sh3rf1Q69ZI1 Gsdma3-201ENSMUST00000073295 1477 ntAPPRIS P2 TSL 1 (best) BASIC12.97□□□□□ -0.33
Sh3rf1Q69ZI1 Chrna3-201ENSMUST00000034851 4358 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Sh3rf1Q69ZI1 Gemin4-201ENSMUST00000102500 3540 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Sh3rf1Q69ZI1 Slc44a4-201ENSMUST00000007249 2261 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Sh3rf1Q69ZI1 Slc35d1-203ENSMUST00000150285 4242 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Sh3rf1Q69ZI1 Poc1b-203ENSMUST00000159228 1799 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Sh3rf1Q69ZI1 Klk6-203ENSMUST00000107968 1394 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Sh3rf1Q69ZI1 Olfr1234-202ENSMUST00000111543 1386 ntAPPRIS P1 TSL 2 BASIC12.97□□□□□ -0.33
Sh3rf1Q69ZI1 Cecr2-202ENSMUST00000112686 9212 ntAPPRIS P2 TSL 5 BASIC12.97□□□□□ -0.33
Sh3rf1Q69ZI1 Ripk4-202ENSMUST00000113743 3743 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Sh3rf1Q69ZI1 Mzf1-205ENSMUST00000182515 3340 ntAPPRIS P2 TSL 1 (best) BASIC12.97□□□□□ -0.33
Sh3rf1Q69ZI1 Nup98-201ENSMUST00000070165 4052 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Sh3rf1Q69ZI1 Gm19817-201ENSMUST00000199764 2132 ntBASIC12.97□□□□□ -0.33
Sh3rf1Q69ZI1 Gjb5-201ENSMUST00000046498 1721 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Sh3rf1Q69ZI1 Oprd1-201ENSMUST00000056336 4021 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Sh3rf1Q69ZI1 Hnrnpc-211ENSMUST00000228748 1691 ntAPPRIS P5 BASIC12.97□□□□□ -0.33
Sh3rf1Q69ZI1 Pik3cd-203ENSMUST00000105689 3132 ntAPPRIS ALT1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Sh3rf1Q69ZI1 Timm10b-202ENSMUST00000106780 671 ntAPPRIS P2 TSL 2 BASIC12.97□□□□□ -0.33
Sh3rf1Q69ZI1 Tagln2-201ENSMUST00000111228 716 ntAPPRIS P1 TSL 3 BASIC12.97□□□□□ -0.33
Sh3rf1Q69ZI1 Gm12537-201ENSMUST00000119266 1002 ntBASIC12.97□□□□□ -0.33
Sh3rf1Q69ZI1 Gm12070-201ENSMUST00000119551 1002 ntBASIC12.97□□□□□ -0.33
Sh3rf1Q69ZI1 Gm12671-201ENSMUST00000119978 1002 ntBASIC12.97□□□□□ -0.33
Sh3rf1Q69ZI1 Gm13292-201ENSMUST00000120014 1000 ntBASIC12.97□□□□□ -0.33
Sh3rf1Q69ZI1 Gm12403-201ENSMUST00000121384 959 ntBASIC12.97□□□□□ -0.33
Sh3rf1Q69ZI1 Snora78-201ENSMUST00000158630 128 ntBASIC12.97□□□□□ -0.33
Sh3rf1Q69ZI1 Grp-202ENSMUST00000173530 617 ntAPPRIS ALT2 TSL 2 BASIC12.97□□□□□ -0.33
Sh3rf1Q69ZI1 Gm10359-201ENSMUST00000180167 1002 ntBASIC12.97□□□□□ -0.33
Sh3rf1Q69ZI1 Gm12033-201ENSMUST00000180654 1002 ntBASIC12.97□□□□□ -0.33
Sh3rf1Q69ZI1 Gm5559-201ENSMUST00000180755 1002 ntBASIC12.97□□□□□ -0.33
Sh3rf1Q69ZI1 Gm26894-201ENSMUST00000180828 1134 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Sh3rf1Q69ZI1 Gm4335-201ENSMUST00000182581 1004 ntBASIC12.97□□□□□ -0.33
Sh3rf1Q69ZI1 Gm29649-201ENSMUST00000185649 419 ntBASIC12.97□□□□□ -0.33
Sh3rf1Q69ZI1 Gm38223-201ENSMUST00000194484 695 ntBASIC12.97□□□□□ -0.33
Sh3rf1Q69ZI1 Gm43240-201ENSMUST00000198543 630 ntTSL 3 BASIC12.97□□□□□ -0.33
Sh3rf1Q69ZI1 Tgif2-ps1-201ENSMUST00000203590 713 ntBASIC12.97□□□□□ -0.33
Sh3rf1Q69ZI1 Scgb3a2-201ENSMUST00000043803 842 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Sh3rf1Q69ZI1 4921530L21Rik-201ENSMUST00000045892 1161 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Sh3rf1Q69ZI1 Fars2-202ENSMUST00000099582 962 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Sh3rf1Q69ZI1 Slc6a4-201ENSMUST00000021195 2725 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Sh3rf1Q69ZI1 Gm12280-201ENSMUST00000155836 1624 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Sh3rf1Q69ZI1 Apol6-206ENSMUST00000149569 2315 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
Sh3rf1Q69ZI1 Pcdhga11-201ENSMUST00000061279 4756 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Sh3rf1Q69ZI1 Fosb-205ENSMUST00000208326 3654 ntTSL 5 BASIC12.97□□□□□ -0.33
Sh3rf1Q69ZI1 Edc3-201ENSMUST00000043990 5708 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Sh3rf1Q69ZI1 Epb41-208ENSMUST00000105981 5303 ntAPPRIS P3 TSL 5 BASIC12.97□□□□□ -0.33
Sh3rf1Q69ZI1 Wdcp-205ENSMUST00000220215 2202 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
Sh3rf1Q69ZI1 Kir3dl1-202ENSMUST00000113105 1544 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Sh3rf1Q69ZI1 Acy1-201ENSMUST00000024031 1529 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Sh3rf1Q69ZI1 Gm10578-202ENSMUST00000211070 2876 ntTSL 2 BASIC12.97□□□□□ -0.33
Sh3rf1Q69ZI1 Serpinb6d-201ENSMUST00000059637 1463 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Sh3rf1Q69ZI1 Tmem254a-204ENSMUST00000185006 2147 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Sh3rf1Q69ZI1 Gm27177-202ENSMUST00000183514 2703 ntBASIC12.97□□□□□ -0.33
Sh3rf1Q69ZI1 Gm1995-201ENSMUST00000220838 2602 ntBASIC12.96□□□□□ -0.33
Sh3rf1Q69ZI1 Dnajb1-202ENSMUST00000212300 2854 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
Sh3rf1Q69ZI1 Slc22a16-201ENSMUST00000019978 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.33
Sh3rf1Q69ZI1 Gpr160-203ENSMUST00000108259 1916 ntAPPRIS P1 TSL 3 BASIC12.96□□□□□ -0.33
Sh3rf1Q69ZI1 Brms1-201ENSMUST00000116567 1338 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Sh3rf1Q69ZI1 Gm13050-201ENSMUST00000122149 1345 ntBASIC12.96□□□□□ -0.33
Sh3rf1Q69ZI1 Bbof1-201ENSMUST00000081828 2187 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Sh3rf1Q69ZI1 Polr3e-202ENSMUST00000106483 3001 ntAPPRIS P3 TSL 5 BASIC12.96□□□□□ -0.33
Sh3rf1Q69ZI1 Cpa1-201ENSMUST00000031806 1583 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Sh3rf1Q69ZI1 Prr18-202ENSMUST00000163887 3251 ntAPPRIS P1 TSL 3 BASIC12.96□□□□□ -0.33
Sh3rf1Q69ZI1 Mdga2-201ENSMUST00000037181 9833 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Sh3rf1Q69ZI1 Gm13886-201ENSMUST00000117876 1183 ntBASIC12.96□□□□□ -0.33
Sh3rf1Q69ZI1 Wisp1-202ENSMUST00000118823 708 ntTSL 5 BASIC12.96□□□□□ -0.33
Sh3rf1Q69ZI1 Mrpl40-202ENSMUST00000119273 778 ntTSL 3 BASIC12.96□□□□□ -0.33
Sh3rf1Q69ZI1 Gm13612-201ENSMUST00000119276 390 ntBASIC12.96□□□□□ -0.33
Sh3rf1Q69ZI1 Gm13323-201ENSMUST00000120245 1151 ntBASIC12.96□□□□□ -0.33
Sh3rf1Q69ZI1 Pisd-ps2-202ENSMUST00000142526 1175 ntBASIC12.96□□□□□ -0.33
Sh3rf1Q69ZI1 Ube4bos1-202ENSMUST00000151896 1286 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
Sh3rf1Q69ZI1 Arhgap20os-204ENSMUST00000152203 2113 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
Sh3rf1Q69ZI1 Far2os1-201ENSMUST00000162391 555 ntTSL 2 BASIC12.96□□□□□ -0.33
Sh3rf1Q69ZI1 Gm9728-201ENSMUST00000200197 1055 ntBASIC12.96□□□□□ -0.33
Sh3rf1Q69ZI1 1810059H22Rik-208ENSMUST00000204941 642 ntTSL 2 BASIC12.96□□□□□ -0.33
Sh3rf1Q69ZI1 Csrp3-201ENSMUST00000032658 877 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Sh3rf1Q69ZI1 Olfr222-201ENSMUST00000071943 1115 ntAPPRIS P1 BASIC12.96□□□□□ -0.33
Sh3rf1Q69ZI1 Ifitm10-202ENSMUST00000084412 1158 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.33
Sh3rf1Q69ZI1 Gm10478-201ENSMUST00000084451 396 ntBASIC12.96□□□□□ -0.33
Sh3rf1Q69ZI1 Tpd52-204ENSMUST00000094381 1074 ntTSL 3 BASIC12.96□□□□□ -0.33
Sh3rf1Q69ZI1 Gm14123-201ENSMUST00000156345 2658 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
Sh3rf1Q69ZI1 Aaas-201ENSMUST00000041208 1816 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Sh3rf1Q69ZI1 Spock1-202ENSMUST00000185502 4614 ntAPPRIS ALT1 TSL 5 BASIC12.96□□□□□ -0.33
Sh3rf1Q69ZI1 Dcun1d3-206ENSMUST00000207233 2917 ntAPPRIS P1 TSL 5 BASIC12.96□□□□□ -0.33
Sh3rf1Q69ZI1 Alpi-201ENSMUST00000113270 2337 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
Sh3rf1Q69ZI1 Sgce-204ENSMUST00000115577 1776 ntTSL 1 (best) BASIC12.96□□□□□ -0.34
Sh3rf1Q69ZI1 Bcl2l1-202ENSMUST00000109820 2568 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
Sh3rf1Q69ZI1 Haus8-202ENSMUST00000110071 1452 ntAPPRIS P3 TSL 1 (best) BASIC12.96□□□□□ -0.34
Sh3rf1Q69ZI1 Mixl1-201ENSMUST00000027778 2294 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
Sh3rf1Q69ZI1 Arhgap12-211ENSMUST00000182383 2500 ntAPPRIS ALT2 TSL 5 BASIC12.96□□□□□ -0.34
Sh3rf1Q69ZI1 Gm21982-201ENSMUST00000146232 3821 ntTSL 2 BASIC12.96□□□□□ -0.34
Sh3rf1Q69ZI1 Rcsd1-202ENSMUST00000097474 5001 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.34
Sh3rf1Q69ZI1 Faap100-201ENSMUST00000026448 3193 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Sh3rf1Q69ZI1 Mapt-201ENSMUST00000100347 1362 ntAPPRIS P4 TSL 1 (best) BASIC12.95□□□□□ -0.34
Sh3rf1Q69ZI1 Fancc-214ENSMUST00000161977 3111 ntAPPRIS P3 TSL 1 (best) BASIC12.95□□□□□ -0.34
Retrieved 100 of 76,532 protein–RNA pairs in 49.6 ms