Protein–RNA interactions for Protein: Q05722

Col9a1, Collagen alpha-1(IX) chain, mousemouse

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col9a1Q05722 Hoxd3os1-202ENSMUST00000139005 1701 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
Col9a1Q05722 Ddx27-201ENSMUST00000018143 2714 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Col9a1Q05722 Slc33a1-202ENSMUST00000160883 1978 ntAPPRIS P1 TSL 5 BASIC12.71□□□□□ -0.37
Col9a1Q05722 Gm10584-201ENSMUST00000207036 2628 ntBASIC12.71□□□□□ -0.37
Col9a1Q05722 Srp72-202ENSMUST00000120550 2297 ntAPPRIS ALT2 TSL 5 BASIC12.71□□□□□ -0.37
Col9a1Q05722 BC051019-201ENSMUST00000033334 1626 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Col9a1Q05722 Zdhhc8-201ENSMUST00000076957 4867 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Col9a1Q05722 Tgfa-201ENSMUST00000032066 4527 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Col9a1Q05722 Phf8-204ENSMUST00000112666 2556 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.37
Col9a1Q05722 Trf-201ENSMUST00000035158 2571 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Col9a1Q05722 Gm12058-201ENSMUST00000118614 437 ntBASIC12.71□□□□□ -0.37
Col9a1Q05722 Gm9166-201ENSMUST00000120293 561 ntBASIC12.71□□□□□ -0.37
Col9a1Q05722 Gm7714-201ENSMUST00000169154 685 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Col9a1Q05722 Nudt12-203ENSMUST00000174122 1244 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
Col9a1Q05722 Smlr1-201ENSMUST00000179685 669 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Col9a1Q05722 Gm6657-203ENSMUST00000188791 531 ntAPPRIS ALT2 TSL 5 BASIC12.71□□□□□ -0.37
Col9a1Q05722 1700113A16Rik-203ENSMUST00000200006 563 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
Col9a1Q05722 Gm43761-201ENSMUST00000202132 991 ntBASIC12.71□□□□□ -0.37
Col9a1Q05722 Gm6905-201ENSMUST00000205729 511 ntBASIC12.71□□□□□ -0.37
Col9a1Q05722 Gm45310-201ENSMUST00000210436 275 ntBASIC12.71□□□□□ -0.37
Col9a1Q05722 AC112680.3-201ENSMUST00000215297 488 ntTSL 3 BASIC12.71□□□□□ -0.37
Col9a1Q05722 1700011B04Rik-204ENSMUST00000220859 422 ntTSL 5 BASIC12.71□□□□□ -0.37
Col9a1Q05722 Gm36525-201ENSMUST00000222590 638 ntTSL 5 BASIC12.71□□□□□ -0.37
Col9a1Q05722 AC116724.1-201ENSMUST00000227900 972 ntBASIC12.71□□□□□ -0.37
Col9a1Q05722 Tnfrsf17-201ENSMUST00000023140 815 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Col9a1Q05722 Bptf-201ENSMUST00000057892 11488 ntAPPRIS P2 TSL 5 BASIC12.71□□□□□ -0.37
Col9a1Q05722 Ifnab-201ENSMUST00000071378 1058 ntAPPRIS P1 BASIC12.71□□□□□ -0.37
Col9a1Q05722 Sftpd-201ENSMUST00000077136 1275 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Col9a1Q05722 Rabep2-202ENSMUST00000106407 2234 ntAPPRIS P2 TSL 1 (best) BASIC12.71□□□□□ -0.37
Col9a1Q05722 Gnao1-203ENSMUST00000125716 3462 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Col9a1Q05722 Vegfa-202ENSMUST00000071648 3451 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.37
Col9a1Q05722 Ormdl2-201ENSMUST00000026409 1573 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Col9a1Q05722 7420426K07Rik-201ENSMUST00000098460 1504 ntAPPRIS P1 BASIC12.71□□□□□ -0.38
Col9a1Q05722 Six1-201ENSMUST00000050029 3316 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
Col9a1Q05722 Rhpn2-201ENSMUST00000032705 3508 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
Col9a1Q05722 Krt2-201ENSMUST00000023712 2613 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
Col9a1Q05722 Ythdc2-201ENSMUST00000037763 7215 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
Col9a1Q05722 Ptprt-202ENSMUST00000109442 7719 ntAPPRIS ALT2 TSL 5 BASIC12.71□□□□□ -0.38
Col9a1Q05722 Gigyf1-201ENSMUST00000031727 5440 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
Col9a1Q05722 Art3-203ENSMUST00000118106 1401 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.38
Col9a1Q05722 Hoxb9-202ENSMUST00000174042 2269 ntTSL 1 (best) BASIC12.71□□□□□ -0.38
Col9a1Q05722 Trpc3-201ENSMUST00000029271 3694 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Col9a1Q05722 Casc4-201ENSMUST00000078752 4215 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Col9a1Q05722 B230319C09Rik-201ENSMUST00000063376 1689 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Col9a1Q05722 Alkbh3-202ENSMUST00000111240 1395 ntTSL 5 BASIC12.7□□□□□ -0.38
Col9a1Q05722 Dsg2-202ENSMUST00000120102 3590 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Col9a1Q05722 Gm38102-201ENSMUST00000192791 1935 ntBASIC12.7□□□□□ -0.38
Col9a1Q05722 Camkv-201ENSMUST00000035700 3277 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Col9a1Q05722 Ubn1-201ENSMUST00000052449 6455 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Col9a1Q05722 AC110816.2-201ENSMUST00000220360 1323 ntTSL 5 BASIC12.7□□□□□ -0.38
Col9a1Q05722 Sra1-205ENSMUST00000173875 2360 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
Col9a1Q05722 Samd13-202ENSMUST00000125965 1590 ntAPPRIS P1 TSL 5 BASIC12.7□□□□□ -0.38
Col9a1Q05722 Gm28649-201ENSMUST00000189153 1581 ntBASIC12.7□□□□□ -0.38
Col9a1Q05722 4932422M17Rik-201ENSMUST00000195992 2639 ntBASIC12.7□□□□□ -0.38
Col9a1Q05722 Pik3ap1-201ENSMUST00000059672 2615 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Col9a1Q05722 Eda-206ENSMUST00000113779 4955 ntAPPRIS P3 TSL 1 (best) BASIC12.7□□□□□ -0.38
Col9a1Q05722 Nfkb1-201ENSMUST00000029812 4117 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Col9a1Q05722 Samd4b-204ENSMUST00000208199 4391 ntAPPRIS P1 TSL 5 BASIC12.7□□□□□ -0.38
Col9a1Q05722 D630024D03Rik-201ENSMUST00000126265 720 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Col9a1Q05722 Gm23675-201ENSMUST00000157311 125 ntBASIC12.7□□□□□ -0.38
Col9a1Q05722 Gm8185-201ENSMUST00000160999 669 ntBASIC12.7□□□□□ -0.38
Col9a1Q05722 Gm16537-201ENSMUST00000161529 702 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Col9a1Q05722 1700003H04Rik-203ENSMUST00000178485 761 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
Col9a1Q05722 Gm26989-201ENSMUST00000182608 749 ntBASIC12.7□□□□□ -0.38
Col9a1Q05722 1700025F24Rik-201ENSMUST00000185238 894 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Col9a1Q05722 Gm29043-201ENSMUST00000186371 623 ntTSL 5 BASIC12.7□□□□□ -0.38
Col9a1Q05722 Gm17877-201ENSMUST00000192578 814 ntBASIC12.7□□□□□ -0.38
Col9a1Q05722 Gm18752-202ENSMUST00000193627 587 ntTSL 3 BASIC12.7□□□□□ -0.38
Col9a1Q05722 Gm29763-201ENSMUST00000205306 616 ntBASIC12.7□□□□□ -0.38
Col9a1Q05722 Selenos-204ENSMUST00000206044 911 ntTSL 3 BASIC12.7□□□□□ -0.38
Col9a1Q05722 Gm18460-201ENSMUST00000208088 464 ntBASIC12.7□□□□□ -0.38
Col9a1Q05722 Gm42067-201ENSMUST00000209642 647 ntTSL 2 BASIC12.7□□□□□ -0.38
Col9a1Q05722 Olfr854-202ENSMUST00000212872 939 ntAPPRIS ALT2 BASIC12.7□□□□□ -0.38
Col9a1Q05722 Gm32025-201ENSMUST00000217960 307 ntBASIC12.7□□□□□ -0.38
Col9a1Q05722 Gm35135-201ENSMUST00000219885 990 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Col9a1Q05722 Gm36074-201ENSMUST00000221383 591 ntTSL 5 BASIC12.7□□□□□ -0.38
Col9a1Q05722 Cmbl-201ENSMUST00000070918 1155 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Col9a1Q05722 Gm17229-201ENSMUST00000097355 1138 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Col9a1Q05722 Pcgf2-201ENSMUST00000018681 1755 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Col9a1Q05722 2900005J15Rik-202ENSMUST00000171190 2025 ntBASIC12.7□□□□□ -0.38
Col9a1Q05722 Tsc22d4-203ENSMUST00000100540 2730 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Col9a1Q05722 Pdk2-201ENSMUST00000038431 2246 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Col9a1Q05722 Tcf19-202ENSMUST00000160885 1732 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Col9a1Q05722 Gm31218-201ENSMUST00000221181 1498 ntTSL 5 BASIC12.7□□□□□ -0.38
Col9a1Q05722 Fbxl19-207ENSMUST00000206893 3449 ntAPPRIS ALT2 TSL 5 BASIC12.7□□□□□ -0.38
Col9a1Q05722 Rpsa-201ENSMUST00000035105 1938 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Col9a1Q05722 Scube2-203ENSMUST00000106729 3563 ntAPPRIS P2 TSL 1 (best) BASIC12.7□□□□□ -0.38
Col9a1Q05722 Vill-203ENSMUST00000126251 1411 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Col9a1Q05722 Fam198a-204ENSMUST00000215990 2149 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Col9a1Q05722 B3gnt7-201ENSMUST00000113306 2582 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Col9a1Q05722 Ifngr2-201ENSMUST00000023687 3254 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Col9a1Q05722 Arhgef1-201ENSMUST00000047873 3212 ntAPPRIS ALT2 TSL 1 (best) BASIC12.69□□□□□ -0.38
Col9a1Q05722 Slc43a1-201ENSMUST00000028469 2539 ntAPPRIS ALT2 TSL 1 (best) BASIC12.69□□□□□ -0.38
Col9a1Q05722 Pak2-201ENSMUST00000023467 5741 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Col9a1Q05722 Antxr1-205ENSMUST00000205033 3160 ntAPPRIS ALT2 TSL 1 (best) BASIC12.69□□□□□ -0.38
Col9a1Q05722 Sbno2-204ENSMUST00000217972 2462 ntTSL 2 BASIC12.69□□□□□ -0.38
Col9a1Q05722 St8sia6-201ENSMUST00000003509 7618 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Col9a1Q05722 Vwa3b-202ENSMUST00000067178 1769 ntAPPRIS P5 TSL 2 BASIC12.69□□□□□ -0.38
Col9a1Q05722 Fam170a-201ENSMUST00000039121 1342 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Col9a1Q05722 Gm9387-201ENSMUST00000098624 1320 ntBASIC12.69□□□□□ -0.38
Retrieved 100 of 76,532 protein–RNA pairs in 51.3 ms