Protein–RNA interactions for Protein: Q04887

Sox9, Transcription factor SOX-9, mousemouse

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox9Q04887 Fktn-204ENSMUST00000221657 6241 ntTSL 5 BASIC13.18□□□□□ -0.3
Sox9Q04887 Nipa2-204ENSMUST00000119201 3925 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Sox9Q04887 Arid3a-202ENSMUST00000105376 4892 ntAPPRIS P3 TSL 1 (best) BASIC13.18□□□□□ -0.3
Sox9Q04887 Iws1-206ENSMUST00000212675 2936 ntAPPRIS ALT2 TSL 5 BASIC13.18□□□□□ -0.3
Sox9Q04887 Sipa1-201ENSMUST00000071857 3868 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Sox9Q04887 Trp53-203ENSMUST00000108658 1771 ntAPPRIS P3 TSL 1 (best) BASIC13.18□□□□□ -0.3
Sox9Q04887 Cldn18-202ENSMUST00000112882 1750 ntAPPRIS ALT1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Sox9Q04887 Trp53-201ENSMUST00000005371 1772 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
Sox9Q04887 Ptprn2-201ENSMUST00000070733 3201 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Sox9Q04887 Kcna5-201ENSMUST00000060972 2862 ntAPPRIS P1 BASIC13.18□□□□□ -0.3
Sox9Q04887 Yipf6-202ENSMUST00000113811 930 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Sox9Q04887 Spx-202ENSMUST00000126521 357 ntAPPRIS P2 TSL 5 BASIC13.18□□□□□ -0.3
Sox9Q04887 C130026I21Rik-205ENSMUST00000161267 652 ntAPPRIS ALT2 TSL 3 BASIC13.18□□□□□ -0.3
Sox9Q04887 Gm7535-201ENSMUST00000164167 909 ntAPPRIS P1 BASIC13.18□□□□□ -0.3
Sox9Q04887 Gm23153-201ENSMUST00000175323 313 ntBASIC13.18□□□□□ -0.3
Sox9Q04887 Smco4-202ENSMUST00000178999 820 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Sox9Q04887 CT485607.1-201ENSMUST00000216100 85 ntBASIC13.18□□□□□ -0.3
Sox9Q04887 Gm29676-202ENSMUST00000222409 364 ntTSL 2 BASIC13.18□□□□□ -0.3
Sox9Q04887 AC159205.5-202ENSMUST00000224849 386 ntBASIC13.18□□□□□ -0.3
Sox9Q04887 AC156501.1-201ENSMUST00000228219 270 ntBASIC13.18□□□□□ -0.3
Sox9Q04887 Pglyrp1-201ENSMUST00000032573 694 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Sox9Q04887 Smco4-201ENSMUST00000045620 954 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Sox9Q04887 Gm36745-201ENSMUST00000213455 1594 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Sox9Q04887 Emc7-201ENSMUST00000069747 5826 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Sox9Q04887 Dnaaf1-201ENSMUST00000093100 2821 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Sox9Q04887 Dis3-201ENSMUST00000042471 5150 ntAPPRIS P1 TSL 5 BASIC13.18□□□□□ -0.3
Sox9Q04887 Adad1-203ENSMUST00000144629 3101 ntAPPRIS P2 TSL 1 (best) BASIC13.18□□□□□ -0.3
Sox9Q04887 Hells-201ENSMUST00000025965 5868 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Sox9Q04887 Cog7-201ENSMUST00000057576 2902 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Sox9Q04887 Mmp2-201ENSMUST00000034187 3078 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Sox9Q04887 Gsdmcl-ps-203ENSMUST00000188367 1375 ntBASIC13.18□□□□□ -0.3
Sox9Q04887 Srr-204ENSMUST00000121738 3183 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Sox9Q04887 Trim26-201ENSMUST00000053434 3198 ntAPPRIS P2 TSL 1 (best) BASIC13.18□□□□□ -0.3
Sox9Q04887 Lrrc29-201ENSMUST00000070508 1922 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Sox9Q04887 Cct3-ps1-201ENSMUST00000118023 1647 ntBASIC13.17□□□□□ -0.3
Sox9Q04887 Rab30-202ENSMUST00000107179 1304 ntTSL 5 BASIC13.17□□□□□ -0.3
Sox9Q04887 Slc13a3-201ENSMUST00000029208 3524 ntAPPRIS P2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Sox9Q04887 Brinp1-201ENSMUST00000030036 3212 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Sox9Q04887 Heg1-201ENSMUST00000126532 6714 ntAPPRIS P5 TSL 5 BASIC13.17□□□□□ -0.3
Sox9Q04887 Cpeb3-204ENSMUST00000126188 4224 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Sox9Q04887 Plcxd3-201ENSMUST00000061925 1851 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Sox9Q04887 Trp63-204ENSMUST00000115305 1729 ntAPPRIS ALT1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Sox9Q04887 Gpr4-201ENSMUST00000060225 2882 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Sox9Q04887 Lin54-208ENSMUST00000149714 3869 ntTSL 5 BASIC13.17□□□□□ -0.3
Sox9Q04887 E130317F20Rik-202ENSMUST00000217802 3420 ntBASIC13.17□□□□□ -0.3
Sox9Q04887 Klhl12-201ENSMUST00000027725 3408 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Sox9Q04887 Spg20-204ENSMUST00000118118 3981 ntAPPRIS P3 TSL 1 (best) BASIC13.17□□□□□ -0.3
Sox9Q04887 Ifna15-201ENSMUST00000102809 573 ntAPPRIS P1 BASIC13.17□□□□□ -0.3
Sox9Q04887 Pmp22-202ENSMUST00000108700 733 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Sox9Q04887 Gm15881-201ENSMUST00000148792 942 ntBASIC13.17□□□□□ -0.3
Sox9Q04887 Plekhd1os-201ENSMUST00000153297 944 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Sox9Q04887 Rmrp-201ENSMUST00000157463 271 ntBASIC13.17□□□□□ -0.3
Sox9Q04887 Gm15852-201ENSMUST00000159701 915 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Sox9Q04887 Gm9061-201ENSMUST00000182707 1006 ntBASIC13.17□□□□□ -0.3
Sox9Q04887 Gm34023-201ENSMUST00000195539 217 ntBASIC13.17□□□□□ -0.3
Sox9Q04887 Gm45184-201ENSMUST00000206354 955 ntTSL 5 BASIC13.17□□□□□ -0.3
Sox9Q04887 Gm35060-201ENSMUST00000207669 825 ntAPPRIS P1 TSL 5 BASIC13.17□□□□□ -0.3
Sox9Q04887 AL732506.1-201ENSMUST00000226420 281 ntBASIC13.17□□□□□ -0.3
Sox9Q04887 Pja1-205ENSMUST00000167246 2666 ntAPPRIS P4 TSL 1 (best) BASIC13.17□□□□□ -0.3
Sox9Q04887 Gpr45-203ENSMUST00000179766 3776 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Sox9Q04887 Gm19863-201ENSMUST00000192480 2218 ntBASIC13.17□□□□□ -0.3
Sox9Q04887 Vwa2-201ENSMUST00000026068 4049 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Sox9Q04887 Adam33-202ENSMUST00000110232 3165 ntAPPRIS P3 TSL 1 (best) BASIC13.17□□□□□ -0.3
Sox9Q04887 A630076J17Rik-201ENSMUST00000179399 1358 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Sox9Q04887 Rabggtb-201ENSMUST00000089950 1381 ntAPPRIS P1 TSL 5 BASIC13.17□□□□□ -0.3
Sox9Q04887 Slc38a1-201ENSMUST00000088452 7266 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Sox9Q04887 Wnk1-223ENSMUST00000177761 11303 ntAPPRIS ALT2 TSL 5 BASIC13.17□□□□□ -0.3
Sox9Q04887 Poli-205ENSMUST00000161542 2736 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Sox9Q04887 Krt71-201ENSMUST00000023710 2185 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Sox9Q04887 Mfsd4a-204ENSMUST00000126927 2422 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Sox9Q04887 Magi1-208ENSMUST00000204347 7929 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Sox9Q04887 4933417C20Rik-201ENSMUST00000193962 1874 ntBASIC13.16□□□□□ -0.3
Sox9Q04887 Nek7-201ENSMUST00000027642 3737 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Sox9Q04887 Tsc2-217ENSMUST00000227745 5598 ntAPPRIS ALT2 BASIC13.16□□□□□ -0.3
Sox9Q04887 Ppig-201ENSMUST00000040915 6245 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Sox9Q04887 Atp2a3-202ENSMUST00000108484 4467 ntAPPRIS ALT2 TSL 5 BASIC13.16□□□□□ -0.3
Sox9Q04887 Kcnq1-201ENSMUST00000009689 3029 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Sox9Q04887 Slc4a4-207ENSMUST00000148750 7931 ntAPPRIS P3 TSL 5 BASIC13.16□□□□□ -0.3
Sox9Q04887 Actn4-201ENSMUST00000068045 3877 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Sox9Q04887 Gm10125-203ENSMUST00000161096 3493 ntTSL 3 BASIC13.16□□□□□ -0.3
Sox9Q04887 Mcf2l-207ENSMUST00000110876 5253 ntAPPRIS P2 TSL 1 (best) BASIC13.16□□□□□ -0.3
Sox9Q04887 AC164107.1-201ENSMUST00000227730 2161 ntBASIC13.16□□□□□ -0.3
Sox9Q04887 Krtap4-8-201ENSMUST00000107439 983 ntAPPRIS P1 BASIC13.16□□□□□ -0.3
Sox9Q04887 Olfr22-ps1-201ENSMUST00000115991 1237 ntAPPRIS P1 TSL 5 BASIC13.16□□□□□ -0.3
Sox9Q04887 Gm12816-201ENSMUST00000118069 1212 ntBASIC13.16□□□□□ -0.3
Sox9Q04887 Smpd4-223ENSMUST00000172182 516 ntTSL 3 BASIC13.16□□□□□ -0.3
Sox9Q04887 Pitx2-204ENSMUST00000172645 915 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Sox9Q04887 Gm28882-201ENSMUST00000185504 314 ntBASIC13.16□□□□□ -0.3
Sox9Q04887 Ino80dos-202ENSMUST00000186436 652 ntTSL 5 BASIC13.16□□□□□ -0.3
Sox9Q04887 4930405N21Rik-201ENSMUST00000199950 1200 ntBASIC13.16□□□□□ -0.3
Sox9Q04887 Prrxl1-205ENSMUST00000228878 723 ntBASIC13.16□□□□□ -0.3
Sox9Q04887 Rpl17-201ENSMUST00000079716 775 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Sox9Q04887 Gm5879-201ENSMUST00000089501 1209 ntBASIC13.16□□□□□ -0.3
Sox9Q04887 Gm21811-201ENSMUST00000096485 930 ntBASIC13.16□□□□□ -0.3
Sox9Q04887 Dpp3-201ENSMUST00000025851 2683 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Sox9Q04887 Tmem51os1-204ENSMUST00000153023 3440 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Sox9Q04887 AW209491-202ENSMUST00000178289 2035 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Sox9Q04887 Txlng-203ENSMUST00000112315 2525 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Sox9Q04887 Sema6c-202ENSMUST00000090823 4029 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
Sox9Q04887 Six3os1-211ENSMUST00000176958 2889 ntTSL 2 BASIC13.16□□□□□ -0.3
Retrieved 100 of 76,532 protein–RNA pairs in 77.4 ms