Protein–RNA interactions for Protein: Q04857

Col6a1, Collagen alpha-1(VI) chain, mousemouse

Predictions only

Length 1,025 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a1Q04857 Sarm1-201ENSMUST00000061174 4083 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Col6a1Q04857 Msantd3-201ENSMUST00000061135 1589 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Col6a1Q04857 Col26a1-201ENSMUST00000057497 2724 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
Col6a1Q04857 Ugt1a5-201ENSMUST00000097659 2203 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Col6a1Q04857 Emc3-201ENSMUST00000032425 1985 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Col6a1Q04857 Heg1-201ENSMUST00000126532 6714 ntAPPRIS P5 TSL 5 BASIC14.12□□□□□ -0.15
Col6a1Q04857 Cant1-203ENSMUST00000106287 1476 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Col6a1Q04857 Cd79a-201ENSMUST00000003469 1457 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Col6a1Q04857 Nmral1-202ENSMUST00000079130 1459 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Col6a1Q04857 Phf24-201ENSMUST00000069184 6392 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Col6a1Q04857 Enc1-201ENSMUST00000041623 4737 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Col6a1Q04857 Alkbh3-202ENSMUST00000111240 1395 ntTSL 5 BASIC14.12□□□□□ -0.15
Col6a1Q04857 6030443J06Rik-202ENSMUST00000181374 1353 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Col6a1Q04857 Gm43650-201ENSMUST00000197337 1382 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Col6a1Q04857 Gm30214-201ENSMUST00000199271 1383 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Col6a1Q04857 A530083I20Rik-201ENSMUST00000180486 2421 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Col6a1Q04857 Llgl2-212ENSMUST00000177736 3612 ntAPPRIS ALT2 TSL 2 BASIC14.12□□□□□ -0.15
Col6a1Q04857 Atp6ap1-201ENSMUST00000019231 2189 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Col6a1Q04857 Fam155a-201ENSMUST00000110969 3388 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
Col6a1Q04857 Zfp618-203ENSMUST00000107415 8826 ntAPPRIS ALT2 TSL 5 BASIC14.12□□□□□ -0.15
Col6a1Q04857 Atg16l1-203ENSMUST00000113190 3102 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Col6a1Q04857 Pik3cd-205ENSMUST00000118704 4894 ntAPPRIS ALT1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Col6a1Q04857 Apbb2-203ENSMUST00000159512 6632 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Col6a1Q04857 Emc7-201ENSMUST00000069747 5826 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Col6a1Q04857 Ackr4-204ENSMUST00000219146 1654 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
Col6a1Q04857 Hnrnpc-211ENSMUST00000228748 1691 ntAPPRIS P5 BASIC14.12□□□□□ -0.15
Col6a1Q04857 Ccl27a-203ENSMUST00000108033 428 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
Col6a1Q04857 Fgf18-202ENSMUST00000109363 991 ntTSL 3 BASIC14.12□□□□□ -0.15
Col6a1Q04857 Dynlrb1-202ENSMUST00000109682 684 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Col6a1Q04857 Gm6335-201ENSMUST00000118081 1194 ntBASIC14.12□□□□□ -0.15
Col6a1Q04857 Gm13611-201ENSMUST00000118269 318 ntBASIC14.12□□□□□ -0.15
Col6a1Q04857 Gm7816-201ENSMUST00000119884 1194 ntBASIC14.12□□□□□ -0.15
Col6a1Q04857 Gm15542-201ENSMUST00000121585 1194 ntBASIC14.12□□□□□ -0.15
Col6a1Q04857 Hmgn1-202ENSMUST00000133885 261 ntTSL 5 BASIC14.12□□□□□ -0.15
Col6a1Q04857 Gm13010-201ENSMUST00000140495 828 ntTSL 5 BASIC14.12□□□□□ -0.15
Col6a1Q04857 Rims3-204ENSMUST00000171363 977 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Col6a1Q04857 Gm18393-201ENSMUST00000208349 1131 ntBASIC14.12□□□□□ -0.15
Col6a1Q04857 Cd7-201ENSMUST00000026159 982 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Col6a1Q04857 Prss34-201ENSMUST00000037453 1216 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Col6a1Q04857 Abhd14a-201ENSMUST00000048685 1256 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
Col6a1Q04857 Ikzf4-201ENSMUST00000133342 5150 ntAPPRIS P1 TSL 2 BASIC14.12□□□□□ -0.15
Col6a1Q04857 Gm28386-201ENSMUST00000189147 1849 ntBASIC14.12□□□□□ -0.15
Col6a1Q04857 Ttc5-201ENSMUST00000006451 1842 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Col6a1Q04857 Cmpk2-201ENSMUST00000020969 3200 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Col6a1Q04857 Ugt1a6a-201ENSMUST00000014263 2265 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Col6a1Q04857 Evl-203ENSMUST00000109854 1870 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
Col6a1Q04857 Etfrf1-203ENSMUST00000111721 1336 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Col6a1Q04857 Tbr1-201ENSMUST00000048934 3977 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Col6a1Q04857 Tgm1-203ENSMUST00000178034 2730 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Col6a1Q04857 Rpusd2-201ENSMUST00000028796 2706 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Col6a1Q04857 Pla2g4c-204ENSMUST00000167232 2154 ntAPPRIS ALT2 TSL 5 BASIC14.12□□□□□ -0.15
Col6a1Q04857 Gm43908-201ENSMUST00000205074 1472 ntBASIC14.12□□□□□ -0.15
Col6a1Q04857 Sema6c-202ENSMUST00000090823 4029 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
Col6a1Q04857 Gm37737-201ENSMUST00000195013 1638 ntBASIC14.12□□□□□ -0.15
Col6a1Q04857 Alx1-201ENSMUST00000040859 2493 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Col6a1Q04857 Cldn34c1-201ENSMUST00000113343 3301 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
Col6a1Q04857 Cabp7-201ENSMUST00000009219 2628 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Col6a1Q04857 Trp53-203ENSMUST00000108658 1771 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
Col6a1Q04857 Trp53-201ENSMUST00000005371 1772 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Col6a1Q04857 Stk38-202ENSMUST00000119274 1939 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Col6a1Q04857 Ubap2l-204ENSMUST00000195995 3516 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Col6a1Q04857 Hmga2-203ENSMUST00000159699 3810 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Col6a1Q04857 Ncaph-201ENSMUST00000110387 2695 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Col6a1Q04857 Tmem200a-201ENSMUST00000066049 4115 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Col6a1Q04857 Lingo1-202ENSMUST00000114247 2287 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Col6a1Q04857 1810008I18Rik-201ENSMUST00000185464 2419 ntBASIC14.11□□□□□ -0.15
Col6a1Q04857 Gm37861-201ENSMUST00000193534 2869 ntBASIC14.11□□□□□ -0.15
Col6a1Q04857 Hadhb-203ENSMUST00000114786 2048 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Col6a1Q04857 Nfyc-203ENSMUST00000118902 1887 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Col6a1Q04857 Gm12208-201ENSMUST00000122004 163 ntBASIC14.11□□□□□ -0.15
Col6a1Q04857 Gm11978-201ENSMUST00000122315 466 ntBASIC14.11□□□□□ -0.15
Col6a1Q04857 Sncb-202ENSMUST00000134110 722 ntAPPRIS P1 TSL 3 BASIC14.11□□□□□ -0.15
Col6a1Q04857 Miga2-208ENSMUST00000140075 2196 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Col6a1Q04857 Rnf141-207ENSMUST00000176716 1080 ntTSL 2 BASIC14.11□□□□□ -0.15
Col6a1Q04857 4930556M19Rik-201ENSMUST00000180604 2468 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Col6a1Q04857 Gm27552-201ENSMUST00000183351 62 ntBASIC14.11□□□□□ -0.15
Col6a1Q04857 Gm27844-201ENSMUST00000183613 62 ntBASIC14.11□□□□□ -0.15
Col6a1Q04857 Gm18916-201ENSMUST00000198264 1246 ntBASIC14.11□□□□□ -0.15
Col6a1Q04857 Gm2511-202ENSMUST00000206158 455 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Col6a1Q04857 4933421I07Rik-201ENSMUST00000032648 1413 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Col6a1Q04857 Asb9-201ENSMUST00000033756 1139 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Col6a1Q04857 Mks1-201ENSMUST00000038196 2499 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Col6a1Q04857 Rpl34-202ENSMUST00000079085 480 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Col6a1Q04857 Lyz1-201ENSMUST00000092162 1263 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Col6a1Q04857 Fmn2-201ENSMUST00000030039 6442 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Col6a1Q04857 Scin-202ENSMUST00000078481 2654 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Col6a1Q04857 Slc5a11-201ENSMUST00000033035 2396 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Col6a1Q04857 Smim14-205ENSMUST00000139122 4560 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Col6a1Q04857 Crcp-201ENSMUST00000026608 1492 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Col6a1Q04857 Dnmt3l-205ENSMUST00000138785 1822 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Col6a1Q04857 Sema6c-203ENSMUST00000107217 3595 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Col6a1Q04857 Ptgdr2-201ENSMUST00000037261 2644 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Col6a1Q04857 Ddx27-205ENSMUST00000150571 2151 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Col6a1Q04857 Lca5-202ENSMUST00000034793 2001 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Col6a1Q04857 Polr2a-202ENSMUST00000071213 5799 ntTSL 5 BASIC14.1□□□□□ -0.15
Col6a1Q04857 Nfic-202ENSMUST00000078185 3163 ntTSL 5 BASIC14.1□□□□□ -0.15
Col6a1Q04857 Magi1-206ENSMUST00000203688 4969 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Col6a1Q04857 Strip2-201ENSMUST00000046028 5370 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Col6a1Q04857 Arnt-201ENSMUST00000015666 2603 ntTSL 5 BASIC14.1□□□□□ -0.15
Col6a1Q04857 Ighv1-61-201ENSMUST00000103531 351 ntAPPRIS P1 BASIC14.1□□□□□ -0.15
Retrieved 100 of 76,532 protein–RNA pairs in 62.9 ms