Protein–RNA interactions for Protein: F7BJK1

Pcdh1, Protocadherin 1 (Fragment), mousemouse

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdh1F7BJK1 Timd2-201ENSMUST00000055102 1941 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Pcdh1F7BJK1 Phactr2-201ENSMUST00000079698 1934 ntAPPRIS ALT2 TSL 5 BASIC11.52□□□□□ -0.57
Pcdh1F7BJK1 Pnma3-201ENSMUST00000060418 3405 ntAPPRIS P1 BASIC11.52□□□□□ -0.57
Pcdh1F7BJK1 Plch2-206ENSMUST00000135665 4349 ntAPPRIS ALT2 TSL 5 BASIC11.52□□□□□ -0.57
Pcdh1F7BJK1 Ecsit-201ENSMUST00000098937 1673 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Pcdh1F7BJK1 Kndc1-201ENSMUST00000053445 7299 ntAPPRIS P1 TSL 5 BASIC11.52□□□□□ -0.57
Pcdh1F7BJK1 Rasgef1b-209ENSMUST00000168092 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Pcdh1F7BJK1 Rasgef1b-201ENSMUST00000031276 2990 ntAPPRIS P3 TSL 1 (best) BASIC11.52□□□□□ -0.57
Pcdh1F7BJK1 Asph-207ENSMUST00000108333 2652 ntTSL 5 BASIC11.52□□□□□ -0.57
Pcdh1F7BJK1 Gm7224-201ENSMUST00000121359 2066 ntBASIC11.51□□□□□ -0.57
Pcdh1F7BJK1 Rpe-202ENSMUST00000113995 2713 ntTSL 3 BASIC11.51□□□□□ -0.57
Pcdh1F7BJK1 Gm43858-201ENSMUST00000199418 1778 ntBASIC11.51□□□□□ -0.57
Pcdh1F7BJK1 Myo6-204ENSMUST00000113268 7927 ntTSL 5 BASIC11.51□□□□□ -0.57
Pcdh1F7BJK1 Chst15-201ENSMUST00000077472 5041 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Pcdh1F7BJK1 Th-201ENSMUST00000000219 1829 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Pcdh1F7BJK1 Ppox-201ENSMUST00000073120 1821 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Pcdh1F7BJK1 Lig1-210ENSMUST00000165964 3166 ntAPPRIS P1 TSL 5 BASIC11.51□□□□□ -0.57
Pcdh1F7BJK1 Tmem178b-201ENSMUST00000061740 3178 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Pcdh1F7BJK1 Sema6d-206ENSMUST00000103239 6225 ntAPPRIS P4 TSL 5 BASIC11.51□□□□□ -0.57
Pcdh1F7BJK1 Tmem132a-202ENSMUST00000120524 3895 ntTSL 5 BASIC11.51□□□□□ -0.57
Pcdh1F7BJK1 Oprm1-214ENSMUST00000105605 1503 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
Pcdh1F7BJK1 Oprm1-201ENSMUST00000000783 1500 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
Pcdh1F7BJK1 Fggy-202ENSMUST00000079223 1891 ntAPPRIS P1 TSL 5 BASIC11.51□□□□□ -0.57
Pcdh1F7BJK1 Umod-206ENSMUST00000209095 2571 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Pcdh1F7BJK1 Hipk4-201ENSMUST00000037134 2926 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
Pcdh1F7BJK1 Mcph1-201ENSMUST00000039412 4662 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Pcdh1F7BJK1 1700001L05Rik-201ENSMUST00000100370 2270 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
Pcdh1F7BJK1 Uhrf1bp1-201ENSMUST00000114849 8584 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Pcdh1F7BJK1 Zbtb40-201ENSMUST00000049583 7192 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Pcdh1F7BJK1 Plcg1-203ENSMUST00000109462 5107 ntAPPRIS P1 TSL 5 BASIC11.51□□□□□ -0.57
Pcdh1F7BJK1 Apbb2-215ENSMUST00000162349 3362 ntAPPRIS P3 TSL 5 BASIC11.51□□□□□ -0.57
Pcdh1F7BJK1 Apbb2-201ENSMUST00000087256 3362 ntAPPRIS ALT1 TSL 5 BASIC11.51□□□□□ -0.57
Pcdh1F7BJK1 Ptpn2-203ENSMUST00000122412 2667 ntAPPRIS ALT2 TSL 1 (best) BASIC11.51□□□□□ -0.57
Pcdh1F7BJK1 Gm43051-201ENSMUST00000201096 2678 ntBASIC11.51□□□□□ -0.57
Pcdh1F7BJK1 Tmem176b-201ENSMUST00000101429 1238 ntAPPRIS P1 TSL 5 BASIC11.51□□□□□ -0.57
Pcdh1F7BJK1 B230359F08Rik-201ENSMUST00000103671 426 ntAPPRIS P1 BASIC11.51□□□□□ -0.57
Pcdh1F7BJK1 Pmvk-202ENSMUST00000107410 652 ntTSL 5 BASIC11.51□□□□□ -0.57
Pcdh1F7BJK1 Birc7-201ENSMUST00000108875 1178 ntAPPRIS P1 TSL 5 BASIC11.51□□□□□ -0.57
Pcdh1F7BJK1 Gm14350-201ENSMUST00000116642 640 ntBASIC11.51□□□□□ -0.57
Pcdh1F7BJK1 Lrrc3c-201ENSMUST00000142268 902 ntAPPRIS P1 TSL 3 BASIC11.51□□□□□ -0.57
Pcdh1F7BJK1 Gm5354-201ENSMUST00000182417 973 ntBASIC11.51□□□□□ -0.57
Pcdh1F7BJK1 Gm27390-201ENSMUST00000184516 176 ntBASIC11.51□□□□□ -0.57
Pcdh1F7BJK1 1700030C10Rik-202ENSMUST00000186243 126 ntBASIC11.51□□□□□ -0.57
Pcdh1F7BJK1 Gm31105-201ENSMUST00000211421 687 ntTSL 2 BASIC11.51□□□□□ -0.57
Pcdh1F7BJK1 Pomc-202ENSMUST00000218089 977 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Pcdh1F7BJK1 Gstt2-203ENSMUST00000218500 794 ntTSL 5 BASIC11.51□□□□□ -0.57
Pcdh1F7BJK1 Hcfc1r1-201ENSMUST00000024697 946 ntAPPRIS P2 TSL 1 (best) BASIC11.51□□□□□ -0.57
Pcdh1F7BJK1 Olfr272-201ENSMUST00000051600 962 ntAPPRIS P1 BASIC11.51□□□□□ -0.57
Pcdh1F7BJK1 Ppil3-201ENSMUST00000081677 896 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Pcdh1F7BJK1 Gm26035-201ENSMUST00000083065 308 ntBASIC11.51□□□□□ -0.57
Pcdh1F7BJK1 Hipk3-201ENSMUST00000028600 7454 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Pcdh1F7BJK1 Pdlim5-201ENSMUST00000029941 5016 ntAPPRIS P3 TSL 1 (best) BASIC11.51□□□□□ -0.57
Pcdh1F7BJK1 Reln-201ENSMUST00000062372 10885 ntAPPRIS ALT2 TSL 5 BASIC11.51□□□□□ -0.57
Pcdh1F7BJK1 Map3k12-201ENSMUST00000023812 5182 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Pcdh1F7BJK1 Vax2os-203ENSMUST00000155159 4063 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
Pcdh1F7BJK1 Lpar5-201ENSMUST00000088292 1393 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Pcdh1F7BJK1 Rbm39-217ENSMUST00000146297 2580 ntAPPRIS ALT1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Pcdh1F7BJK1 Gm3764-205ENSMUST00000181134 2203 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
Pcdh1F7BJK1 Gm4858-202ENSMUST00000194595 1810 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
Pcdh1F7BJK1 Sec61g-203ENSMUST00000109643 1862 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Pcdh1F7BJK1 Gm3365-201ENSMUST00000216296 1480 ntBASIC11.51□□□□□ -0.57
Pcdh1F7BJK1 AC154527.2-201ENSMUST00000225256 1466 ntBASIC11.51□□□□□ -0.57
Pcdh1F7BJK1 Spryd7-201ENSMUST00000022497 4002 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Pcdh1F7BJK1 Arfip1-201ENSMUST00000098990 2799 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
Pcdh1F7BJK1 Mdm4-201ENSMUST00000067398 1914 ntAPPRIS ALT1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Pcdh1F7BJK1 Cpped1-201ENSMUST00000073371 1922 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
Pcdh1F7BJK1 Ero1lb-201ENSMUST00000071973 4239 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Pcdh1F7BJK1 Slc5a11-207ENSMUST00000167299 2022 ntAPPRIS P1 TSL 5 BASIC11.5□□□□□ -0.57
Pcdh1F7BJK1 Myh7-204ENSMUST00000168485 6230 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Pcdh1F7BJK1 Nfe2l1-210ENSMUST00000167110 3547 ntAPPRIS ALT2 TSL 2 BASIC11.5□□□□□ -0.57
Pcdh1F7BJK1 Gm2420-201ENSMUST00000119864 2149 ntBASIC11.5□□□□□ -0.57
Pcdh1F7BJK1 Gm43365-201ENSMUST00000196522 2106 ntBASIC11.5□□□□□ -0.57
Pcdh1F7BJK1 Rab11fip3-203ENSMUST00000122103 5015 ntAPPRIS P4 TSL 1 (best) BASIC11.5□□□□□ -0.57
Pcdh1F7BJK1 Stx11-201ENSMUST00000042861 4173 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Pcdh1F7BJK1 Fip1l1-201ENSMUST00000080164 4673 ntAPPRIS P3 TSL 1 (best) BASIC11.5□□□□□ -0.57
Pcdh1F7BJK1 Ttll12-201ENSMUST00000016901 3220 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Pcdh1F7BJK1 Etf1-201ENSMUST00000025218 3709 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Pcdh1F7BJK1 Cflar-202ENSMUST00000097722 1771 ntAPPRIS ALT2 TSL 5 BASIC11.5□□□□□ -0.57
Pcdh1F7BJK1 Styxl1-204ENSMUST00000111163 1276 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Pcdh1F7BJK1 Gm5687-201ENSMUST00000118252 640 ntBASIC11.5□□□□□ -0.57
Pcdh1F7BJK1 Gm12291-201ENSMUST00000121627 311 ntBASIC11.5□□□□□ -0.57
Pcdh1F7BJK1 Rapgef3os2-201ENSMUST00000124374 920 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
Pcdh1F7BJK1 Gm11851-201ENSMUST00000132219 692 ntTSL 5 BASIC11.5□□□□□ -0.57
Pcdh1F7BJK1 Gm14104-201ENSMUST00000135990 356 ntTSL 5 BASIC11.5□□□□□ -0.57
Pcdh1F7BJK1 Lgals3-203ENSMUST00000146468 1072 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Pcdh1F7BJK1 Tmem61-202ENSMUST00000177702 561 ntTSL 5 BASIC11.5□□□□□ -0.57
Pcdh1F7BJK1 Gm9061-201ENSMUST00000182707 1006 ntBASIC11.5□□□□□ -0.57
Pcdh1F7BJK1 Gm31326-201ENSMUST00000191856 1048 ntBASIC11.5□□□□□ -0.57
Pcdh1F7BJK1 Gm19184-201ENSMUST00000196798 928 ntBASIC11.5□□□□□ -0.57
Pcdh1F7BJK1 Gm35911-201ENSMUST00000198837 677 ntAPPRIS P1 TSL 5 BASIC11.5□□□□□ -0.57
Pcdh1F7BJK1 Gm35082-201ENSMUST00000207308 338 ntTSL 3 BASIC11.5□□□□□ -0.57
Pcdh1F7BJK1 AC073947.1-201ENSMUST00000216991 649 ntBASIC11.5□□□□□ -0.57
Pcdh1F7BJK1 AC159263.1-201ENSMUST00000220746 482 ntTSL 5 BASIC11.5□□□□□ -0.57
Pcdh1F7BJK1 Gm815-201ENSMUST00000099536 610 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Pcdh1F7BJK1 Tmem181a-201ENSMUST00000088940 4405 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Pcdh1F7BJK1 Lpar1-205ENSMUST00000107575 3421 ntAPPRIS P3 TSL 1 (best) BASIC11.5□□□□□ -0.57
Pcdh1F7BJK1 AC101945.2-201ENSMUST00000227886 1377 ntBASIC11.5□□□□□ -0.57
Pcdh1F7BJK1 Usp5-202ENSMUST00000122110 3076 ntAPPRIS ALT1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Pcdh1F7BJK1 Myo10-201ENSMUST00000022882 5880 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
Pcdh1F7BJK1 Fancc-214ENSMUST00000161977 3111 ntAPPRIS P3 TSL 1 (best) BASIC11.5□□□□□ -0.57
Retrieved 100 of 76,532 protein–RNA pairs in 33 ms