Protein–RNA interactions for Protein: A3KFM7

Chd6, Chromodomain-helicase-DNA-binding protein 6, mousemouse

Predictions only

Length 2,711 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd6A3KFM7 Atg16l1-201ENSMUST00000027512 3130 ntAPPRIS P3 TSL 1 (best) BASIC10.25□□□□□ -0.77
Chd6A3KFM7 Itga3-203ENSMUST00000120375 4697 ntAPPRIS ALT2 TSL 1 (best) BASIC10.25□□□□□ -0.77
Chd6A3KFM7 Grk3-204ENSMUST00000197888 1938 ntTSL 1 (best) BASIC10.25□□□□□ -0.77
Chd6A3KFM7 Fmo1-202ENSMUST00000111518 1506 ntTSL 1 (best) BASIC10.25□□□□□ -0.77
Chd6A3KFM7 Cmip-201ENSMUST00000095172 2276 ntTSL 1 (best) BASIC10.25□□□□□ -0.77
Chd6A3KFM7 Tgfa-201ENSMUST00000032066 4527 ntAPPRIS P1 TSL 1 (best) BASIC10.25□□□□□ -0.77
Chd6A3KFM7 Rcan2-202ENSMUST00000044895 3363 ntTSL 1 (best) BASIC10.24□□□□□ -0.77
Chd6A3KFM7 Pcdhac2-201ENSMUST00000047479 5888 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
Chd6A3KFM7 Ivns1abp-201ENSMUST00000023918 3511 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
Chd6A3KFM7 Rad54b-202ENSMUST00000095145 2403 ntTSL 1 (best) BASIC10.24□□□□□ -0.77
Chd6A3KFM7 Ilvbl-203ENSMUST00000218215 2331 ntTSL 1 (best) BASIC10.24□□□□□ -0.77
Chd6A3KFM7 Ighv1-5-201ENSMUST00000103494 294 ntAPPRIS P1 BASIC10.24□□□□□ -0.77
Chd6A3KFM7 C030013C21Rik-201ENSMUST00000133400 795 ntTSL 3 BASIC10.24□□□□□ -0.77
Chd6A3KFM7 Gad1-207ENSMUST00000148210 1021 ntTSL 5 BASIC10.24□□□□□ -0.77
Chd6A3KFM7 Gm24398-201ENSMUST00000157870 109 ntBASIC10.24□□□□□ -0.77
Chd6A3KFM7 Gm8100-201ENSMUST00000182906 988 ntBASIC10.24□□□□□ -0.77
Chd6A3KFM7 Gm37458-201ENSMUST00000194055 410 ntBASIC10.24□□□□□ -0.77
Chd6A3KFM7 Gm43912-201ENSMUST00000204352 538 ntBASIC10.24□□□□□ -0.77
Chd6A3KFM7 AC130477.1-201ENSMUST00000226982 420 ntBASIC10.24□□□□□ -0.77
Chd6A3KFM7 Taar9-201ENSMUST00000041180 1047 ntAPPRIS P1 BASIC10.24□□□□□ -0.77
Chd6A3KFM7 Krtap6-2-201ENSMUST00000082065 786 ntAPPRIS P1 BASIC10.24□□□□□ -0.77
Chd6A3KFM7 Pomgnt1-201ENSMUST00000106494 2226 ntTSL 1 (best) BASIC10.24□□□□□ -0.77
Chd6A3KFM7 Slc30a9-201ENSMUST00000113676 5648 ntAPPRIS ALT2 TSL 1 (best) BASIC10.24□□□□□ -0.77
Chd6A3KFM7 Caskin1-201ENSMUST00000024958 6172 ntAPPRIS P1 TSL 5 BASIC10.24□□□□□ -0.77
Chd6A3KFM7 Mrgprh-201ENSMUST00000075296 1809 ntAPPRIS P1 BASIC10.24□□□□□ -0.77
Chd6A3KFM7 Fyn-207ENSMUST00000146287 2135 ntTSL 1 (best) BASIC10.24□□□□□ -0.77
Chd6A3KFM7 Cdk2-202ENSMUST00000026416 2406 ntTSL 1 (best) BASIC10.24□□□□□ -0.77
Chd6A3KFM7 Slc19a2-201ENSMUST00000044021 3571 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
Chd6A3KFM7 Nub1-201ENSMUST00000068825 3269 ntAPPRIS P3 TSL 1 (best) BASIC10.24□□□□□ -0.77
Chd6A3KFM7 Rbm15b-201ENSMUST00000055843 6511 ntAPPRIS P1 BASIC10.24□□□□□ -0.77
Chd6A3KFM7 Dscam-201ENSMUST00000056102 7498 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
Chd6A3KFM7 Lhcgr-201ENSMUST00000024916 2553 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
Chd6A3KFM7 Asb10-202ENSMUST00000117900 1432 ntTSL 5 BASIC10.24□□□□□ -0.77
Chd6A3KFM7 Rdh8-201ENSMUST00000066387 1405 ntAPPRIS P1 TSL 2 BASIC10.24□□□□□ -0.77
Chd6A3KFM7 Clpb-202ENSMUST00000106998 2287 ntAPPRIS ALT2 TSL 5 BASIC10.24□□□□□ -0.77
Chd6A3KFM7 Shpk-201ENSMUST00000006105 2808 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
Chd6A3KFM7 Ccdc117-201ENSMUST00000020776 3372 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
Chd6A3KFM7 Cant1-201ENSMUST00000017620 4182 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
Chd6A3KFM7 Rnf113a2-201ENSMUST00000183146 1383 ntAPPRIS P1 BASIC10.24□□□□□ -0.77
Chd6A3KFM7 Dnm1-203ENSMUST00000113350 3258 ntAPPRIS ALT1 TSL 5 BASIC10.24□□□□□ -0.77
Chd6A3KFM7 Zbtb45-202ENSMUST00000172240 2722 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
Chd6A3KFM7 Prrxl1-201ENSMUST00000068938 1610 ntTSL 1 (best) BASIC10.24□□□□□ -0.77
Chd6A3KFM7 Lmf1-202ENSMUST00000116641 1858 ntAPPRIS P2 TSL 5 BASIC10.24□□□□□ -0.77
Chd6A3KFM7 Prrxl1-202ENSMUST00000186452 2371 ntAPPRIS P1 TSL 5 BASIC10.24□□□□□ -0.77
Chd6A3KFM7 Gm30238-201ENSMUST00000195528 2603 ntBASIC10.24□□□□□ -0.77
Chd6A3KFM7 Msantd3-201ENSMUST00000061135 1589 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
Chd6A3KFM7 Cabp7-201ENSMUST00000009219 2628 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
Chd6A3KFM7 Gm43823-201ENSMUST00000197391 1808 ntBASIC10.24□□□□□ -0.77
Chd6A3KFM7 Fam199x-201ENSMUST00000047852 8299 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
Chd6A3KFM7 March7-203ENSMUST00000102748 3594 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
Chd6A3KFM7 Opn1mw-202ENSMUST00000101457 1233 ntAPPRIS ALT2 TSL 1 (best) BASIC10.24□□□□□ -0.77
Chd6A3KFM7 Rhox3d-ps-201ENSMUST00000119181 825 ntBASIC10.24□□□□□ -0.77
Chd6A3KFM7 Mia-202ENSMUST00000121848 572 ntAPPRIS ALT2 TSL 1 (best) BASIC10.24□□□□□ -0.77
Chd6A3KFM7 Cd63-ps-202ENSMUST00000154992 717 ntBASIC10.24□□□□□ -0.77
Chd6A3KFM7 9930004E17Rik-201ENSMUST00000180031 498 ntBASIC10.24□□□□□ -0.77
Chd6A3KFM7 4732414G09Rik-202ENSMUST00000180695 408 ntTSL 3 BASIC10.24□□□□□ -0.77
Chd6A3KFM7 Gm26647-201ENSMUST00000180816 1255 ntTSL 1 (best) BASIC10.24□□□□□ -0.77
Chd6A3KFM7 Tm2d3-201ENSMUST00000032726 908 ntAPPRIS ALT2 TSL 1 (best) BASIC10.24□□□□□ -0.77
Chd6A3KFM7 Gm9785-201ENSMUST00000062642 1006 ntBASIC10.24□□□□□ -0.77
Chd6A3KFM7 Tmsb15b2-201ENSMUST00000069803 450 ntTSL 2 BASIC10.24□□□□□ -0.77
Chd6A3KFM7 Mfsd4b4-202ENSMUST00000178563 3523 ntTSL 5 BASIC10.24□□□□□ -0.77
Chd6A3KFM7 Spag1-202ENSMUST00000171205 3219 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
Chd6A3KFM7 Gng4-201ENSMUST00000021734 3179 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
Chd6A3KFM7 Eya4-206ENSMUST00000219315 3100 ntAPPRIS ALT2 TSL 5 BASIC10.24□□□□□ -0.77
Chd6A3KFM7 Dnmt3b-205ENSMUST00000103150 4070 ntAPPRIS ALT2 TSL 1 (best) BASIC10.24□□□□□ -0.77
Chd6A3KFM7 Gm44152-201ENSMUST00000205007 1691 ntBASIC10.24□□□□□ -0.77
Chd6A3KFM7 Tbkbp1-205ENSMUST00000118375 3288 ntAPPRIS P2 TSL 5 BASIC10.24□□□□□ -0.77
Chd6A3KFM7 Zfyve9-202ENSMUST00000106657 6459 ntAPPRIS P2 TSL 5 BASIC10.24□□□□□ -0.77
Chd6A3KFM7 H2-Q6-202ENSMUST00000174699 2085 ntAPPRIS P1 TSL 5 BASIC10.24□□□□□ -0.77
Chd6A3KFM7 Dusp15-203ENSMUST00000123121 2993 ntAPPRIS P1 TSL 3 BASIC10.23□□□□□ -0.77
Chd6A3KFM7 Morc4-202ENSMUST00000087401 3862 ntAPPRIS ALT2 TSL 1 (best) BASIC10.23□□□□□ -0.77
Chd6A3KFM7 Lzts3-203ENSMUST00000110260 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC10.23□□□□□ -0.77
Chd6A3KFM7 Wdr45-204ENSMUST00000115689 1568 ntAPPRIS P2 TSL 1 (best) BASIC10.23□□□□□ -0.77
Chd6A3KFM7 Glud1-201ENSMUST00000022322 3390 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
Chd6A3KFM7 Rad23b-201ENSMUST00000030134 3810 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
Chd6A3KFM7 9430015G10Rik-202ENSMUST00000105576 1329 ntTSL 1 (best) BASIC10.23□□□□□ -0.77
Chd6A3KFM7 Notch4-201ENSMUST00000015612 6591 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
Chd6A3KFM7 Rrbp1-201ENSMUST00000016072 5177 ntAPPRIS P4 TSL 5 BASIC10.23□□□□□ -0.77
Chd6A3KFM7 Eln-201ENSMUST00000015138 3853 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
Chd6A3KFM7 Socs3-201ENSMUST00000054002 2552 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
Chd6A3KFM7 Chchd7-202ENSMUST00000108386 524 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
Chd6A3KFM7 Chchd7-206ENSMUST00000121110 381 ntAPPRIS P1 TSL 5 BASIC10.23□□□□□ -0.77
Chd6A3KFM7 Gm13707-201ENSMUST00000123663 600 ntTSL 1 (best) BASIC10.23□□□□□ -0.77
Chd6A3KFM7 Asb8-203ENSMUST00000123922 1162 ntAPPRIS P1 TSL 3 BASIC10.23□□□□□ -0.77
Chd6A3KFM7 Gm24078-201ENSMUST00000158184 103 ntBASIC10.23□□□□□ -0.77
Chd6A3KFM7 Tmem208-202ENSMUST00000098453 950 ntTSL 1 (best) BASIC10.23□□□□□ -0.77
Chd6A3KFM7 Smad3-201ENSMUST00000034973 5090 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
Chd6A3KFM7 Tmem268-201ENSMUST00000077709 3765 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
Chd6A3KFM7 Iws1-206ENSMUST00000212675 2936 ntAPPRIS ALT2 TSL 5 BASIC10.23□□□□□ -0.77
Chd6A3KFM7 C130012C08Rik-201ENSMUST00000194287 3665 ntBASIC10.23□□□□□ -0.77
Chd6A3KFM7 Acnat1-202ENSMUST00000107697 1446 ntAPPRIS ALT2 TSL 5 BASIC10.23□□□□□ -0.77
Chd6A3KFM7 Cyp2c53-ps-203ENSMUST00000176493 1443 ntTSL 1 (best) BASIC10.23□□□□□ -0.77
Chd6A3KFM7 Tmem94-202ENSMUST00000103033 5238 ntAPPRIS P2 TSL 2 BASIC10.23□□□□□ -0.77
Chd6A3KFM7 Rasal3-201ENSMUST00000063824 3681 ntAPPRIS P3 TSL 1 (best) BASIC10.23□□□□□ -0.77
Chd6A3KFM7 Slc26a4-201ENSMUST00000001253 3075 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
Chd6A3KFM7 Zdhhc7-201ENSMUST00000034280 3069 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
Chd6A3KFM7 AC163354.1-205ENSMUST00000223262 1511 ntTSL 5 BASIC10.23□□□□□ -0.77
Chd6A3KFM7 Nrf1-211ENSMUST00000115212 3584 ntTSL 1 (best) BASIC10.23□□□□□ -0.77
Chd6A3KFM7 Jun-201ENSMUST00000107094 3189 ntAPPRIS P1 BASIC10.23□□□□□ -0.77
Chd6A3KFM7 Hnf4a-202ENSMUST00000109411 4362 ntTSL 1 (best) BASIC10.23□□□□□ -0.77
Retrieved 100 of 76,532 protein–RNA pairs in 98.5 ms