Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Dmkn-201ENSMUST00000041703 662 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0
Trim56Q80VI1 Mapk4-201ENSMUST00000091851 4594 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Trim56Q80VI1 Cenpo-201ENSMUST00000020981 2037 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0
Trim56Q80VI1 Gm10097-201ENSMUST00000180100 2784 ntAPPRIS P1 BASIC15.08■□□□□ 0
Trim56Q80VI1 Arfip1-201ENSMUST00000098990 2799 ntTSL 1 (best) BASIC15.08■□□□□ 0
Trim56Q80VI1 Uchl1os-201ENSMUST00000152002 1685 ntTSL 1 (best) BASIC15.08■□□□□ 0
Trim56Q80VI1 2700080J24Rik-201ENSMUST00000205314 1662 ntBASIC15.08■□□□□ 0
Trim56Q80VI1 Ace-202ENSMUST00000001964 2418 ntTSL 1 (best) BASIC15.08■□□□□ 0
Trim56Q80VI1 Dtnb-223ENSMUST00000174547 2112 ntTSL 5 BASIC15.08■□□□□ 0
Trim56Q80VI1 Gm12132-201ENSMUST00000130945 1391 ntTSL 1 (best) BASIC15.08■□□□□ 0
Trim56Q80VI1 Nox3-201ENSMUST00000115800 1792 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Trim56Q80VI1 4933439K11Rik-203ENSMUST00000169111 1869 ntTSL 1 (best) BASIC15.08■□□□□ 0
Trim56Q80VI1 Ubqln1-202ENSMUST00000076454 3561 ntAPPRIS P3 TSL 1 (best) BASIC15.08■□□□□ 0
Trim56Q80VI1 Ppm1b-204ENSMUST00000112307 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0
Trim56Q80VI1 Slc7a4-202ENSMUST00000090165 1907 ntTSL 1 (best) BASIC15.07■□□□□ 0
Trim56Q80VI1 Sarm1-201ENSMUST00000061174 4083 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Trim56Q80VI1 Cstf3-201ENSMUST00000028599 2817 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Trim56Q80VI1 Dusp26-203ENSMUST00000161713 1524 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Trim56Q80VI1 Gspt1-205ENSMUST00000167571 3716 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
Trim56Q80VI1 Map4k2-201ENSMUST00000025897 4644 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Trim56Q80VI1 Nup88-203ENSMUST00000108531 2453 ntTSL 1 (best) BASIC15.07■□□□□ 0
Trim56Q80VI1 Fchsd1-201ENSMUST00000043437 4270 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Trim56Q80VI1 Pgghg-201ENSMUST00000079403 2981 ntAPPRIS P2 TSL 1 (best) BASIC15.07■□□□□ 0
Trim56Q80VI1 Armcx6-202ENSMUST00000113194 2120 ntAPPRIS P1 TSL 2 BASIC15.07■□□□□ 0
Trim56Q80VI1 Nkd2-201ENSMUST00000022051 4016 ntAPPRIS P3 TSL 1 (best) BASIC15.07■□□□□ 0
Trim56Q80VI1 Gm26616-202ENSMUST00000195676 3107 ntBASIC15.07■□□□□ 0
Trim56Q80VI1 Adck1-202ENSMUST00000166940 2199 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Trim56Q80VI1 Rbl2-208ENSMUST00000209518 4792 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
Trim56Q80VI1 Fam222b-201ENSMUST00000073705 3258 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Trim56Q80VI1 Gm43858-201ENSMUST00000199418 1778 ntBASIC15.07■□□□□ 0
Trim56Q80VI1 Tshz2-202ENSMUST00000109159 4314 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Trim56Q80VI1 Anapc16-205ENSMUST00000182912 566 ntTSL 2 BASIC15.07■□□□□ 0
Trim56Q80VI1 Gm43179-201ENSMUST00000198797 275 ntBASIC15.07■□□□□ 0
Trim56Q80VI1 AC155813.1-201ENSMUST00000213224 590 ntTSL 3 BASIC15.07■□□□□ 0
Trim56Q80VI1 Ppcdc-207ENSMUST00000214339 738 ntTSL 2 BASIC15.07■□□□□ 0
Trim56Q80VI1 AC162938.2-203ENSMUST00000216604 1134 ntTSL 5 BASIC15.07■□□□□ 0
Trim56Q80VI1 Cts7-204ENSMUST00000225321 1257 ntBASIC15.07■□□□□ 0
Trim56Q80VI1 AC108416.1-202ENSMUST00000228927 1201 ntBASIC15.07■□□□□ 0
Trim56Q80VI1 Il25-201ENSMUST00000037863 1064 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Trim56Q80VI1 Ggact-201ENSMUST00000038075 1076 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Trim56Q80VI1 Nr0b2-201ENSMUST00000042706 1132 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Trim56Q80VI1 Scgb3a2-201ENSMUST00000043803 842 ntTSL 1 (best) BASIC15.07■□□□□ 0
Trim56Q80VI1 Vps52-201ENSMUST00000025178 3332 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Trim56Q80VI1 Olfr533-206ENSMUST00000217179 2825 ntAPPRIS P1 TSL 5 BASIC15.07■□□□□ 0
Trim56Q80VI1 Cavin1-201ENSMUST00000060792 3491 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Trim56Q80VI1 Luc7l2-207ENSMUST00000161227 2405 ntTSL 1 (best) BASIC15.07■□□□□ 0
Trim56Q80VI1 Atxn10-201ENSMUST00000163242 2425 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Trim56Q80VI1 Evc2-201ENSMUST00000056365 4091 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Trim56Q80VI1 Sema4a-213ENSMUST00000165898 3125 ntAPPRIS P1 TSL 5 BASIC15.07■□□□□ 0
Trim56Q80VI1 Gmppb-201ENSMUST00000047947 1429 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Trim56Q80VI1 Foxred2-202ENSMUST00000117725 4347 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Trim56Q80VI1 Rgs11-202ENSMUST00000122058 2005 ntAPPRIS ALT2 TSL 2 BASIC15.07■□□□□ 0
Trim56Q80VI1 Disp1-205ENSMUST00000195372 4901 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Trim56Q80VI1 Usp16-201ENSMUST00000026710 3205 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Trim56Q80VI1 Gtf2i-201ENSMUST00000059042 4455 ntAPPRIS P4 TSL 1 (best) BASIC15.07■□□□□ 0
Trim56Q80VI1 Cd27-201ENSMUST00000032486 1559 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Trim56Q80VI1 D830024N08Rik-201ENSMUST00000212132 2899 ntTSL 1 (best) BASIC15.07■□□□□ 0
Trim56Q80VI1 Il2rg-201ENSMUST00000033664 1670 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Trim56Q80VI1 Serpinb12-201ENSMUST00000081277 1689 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Trim56Q80VI1 Tekt3-201ENSMUST00000035732 1748 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Trim56Q80VI1 Cnst-201ENSMUST00000040706 4709 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Trim56Q80VI1 Ehd1-201ENSMUST00000025684 3353 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Trim56Q80VI1 Pepd-201ENSMUST00000075068 1881 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Trim56Q80VI1 Gdf6-201ENSMUST00000057613 3532 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Trim56Q80VI1 Rhox7-ps1-201ENSMUST00000117595 806 ntBASIC15.06■□□□□ 0
Trim56Q80VI1 Gm13736-201ENSMUST00000119272 253 ntBASIC15.06■□□□□ 0
Trim56Q80VI1 Gm4986-201ENSMUST00000119731 549 ntBASIC15.06■□□□□ 0
Trim56Q80VI1 Tmem219-203ENSMUST00000120007 1087 ntTSL 1 (best) BASIC15.06■□□□□ 0
Trim56Q80VI1 Pagr1b-201ENSMUST00000172958 693 ntAPPRIS P1 TSL 3 BASIC15.06■□□□□ 0
Trim56Q80VI1 A930009A15Rik-201ENSMUST00000173620 1001 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Trim56Q80VI1 Fgfr3-ps-201ENSMUST00000195511 1137 ntBASIC15.06■□□□□ 0
Trim56Q80VI1 Gm44632-201ENSMUST00000207245 474 ntTSL 2 BASIC15.06■□□□□ 0
Trim56Q80VI1 Gm35082-201ENSMUST00000207308 338 ntTSL 3 BASIC15.06■□□□□ 0
Trim56Q80VI1 Gm5904-201ENSMUST00000210286 865 ntBASIC15.06■□□□□ 0
Trim56Q80VI1 AC112680.3-201ENSMUST00000215297 488 ntTSL 3 BASIC15.06■□□□□ 0
Trim56Q80VI1 AC132384.14-201ENSMUST00000219346 1147 ntBASIC15.06■□□□□ 0
Trim56Q80VI1 Morn2-202ENSMUST00000227729 656 ntBASIC15.06■□□□□ 0
Trim56Q80VI1 Saa3-201ENSMUST00000006956 555 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Trim56Q80VI1 Gm17383-201ENSMUST00000078739 1041 ntBASIC15.06■□□□□ 0
Trim56Q80VI1 Olfr366-201ENSMUST00000091001 930 ntAPPRIS P1 BASIC15.06■□□□□ 0
Trim56Q80VI1 Gpatch4-203ENSMUST00000193398 2210 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Trim56Q80VI1 Abhd1-202ENSMUST00000201125 1352 ntTSL 1 (best) BASIC15.06■□□□□ 0
Trim56Q80VI1 Slc25a25-205ENSMUST00000113310 3278 ntTSL 1 (best) BASIC15.06■□□□□ 0
Trim56Q80VI1 Tmub1-203ENSMUST00000115036 1455 ntTSL 5 BASIC15.06■□□□□ 0
Trim56Q80VI1 Llgl2-212ENSMUST00000177736 3612 ntAPPRIS ALT2 TSL 2 BASIC15.06■□□□□ 0
Trim56Q80VI1 Gm36745-201ENSMUST00000213455 1594 ntTSL 1 (best) BASIC15.06■□□□□ 0
Trim56Q80VI1 Car6-201ENSMUST00000030817 1567 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Trim56Q80VI1 Srsf10-205ENSMUST00000126641 3754 ntTSL 1 (best) BASIC15.06■□□□□ 0
Trim56Q80VI1 Tle3-204ENSMUST00000159386 4527 ntAPPRIS ALT2 TSL 5 BASIC15.05■□□□□ 0
Trim56Q80VI1 Slc12a8-206ENSMUST00000122427 2070 ntAPPRIS ALT2 TSL 5 BASIC15.05■□□□□ 0
Trim56Q80VI1 Phf8-205ENSMUST00000112668 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ 0
Trim56Q80VI1 Odf2-201ENSMUST00000028128 2376 ntAPPRIS P3 TSL 1 (best) BASIC15.05■□□□□ 0
Trim56Q80VI1 Ccdc81-201ENSMUST00000041195 2439 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
Trim56Q80VI1 Grin1-202ENSMUST00000114307 4127 ntTSL 5 BASIC15.05■□□□□ 0
Trim56Q80VI1 Rbpjl-201ENSMUST00000017151 2456 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
Trim56Q80VI1 Trim29-201ENSMUST00000034511 2735 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
Trim56Q80VI1 Hspb7-201ENSMUST00000102486 2769 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
Trim56Q80VI1 Plekhg6-201ENSMUST00000042647 3299 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Trim56Q80VI1 Ttc17-202ENSMUST00000094801 3408 ntTSL 5 BASIC15.05■□□□□ -0
Trim56Q80VI1 Gm15703-201ENSMUST00000120250 880 ntBASIC15.05■□□□□ -0
Retrieved 100 of 76,532 protein–RNA pairs in 89.3 ms