Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Gm8206-201ENSMUST00000164139 1956 ntTSL 5 BASIC13.71□□□□□ -0.21
Upf3bQ3ULL6 Vsir-203ENSMUST00000105460 4843 ntAPPRIS ALT1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Upf3bQ3ULL6 Vsir-201ENSMUST00000020301 4846 ntAPPRIS P3 TSL 1 (best) BASIC13.71□□□□□ -0.21
Upf3bQ3ULL6 Tifa-203ENSMUST00000164447 1538 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Upf3bQ3ULL6 Dctn4-202ENSMUST00000223590 1530 ntBASIC13.71□□□□□ -0.21
Upf3bQ3ULL6 Dppa4-202ENSMUST00000096045 1534 ntAPPRIS P4 TSL 1 (best) BASIC13.71□□□□□ -0.21
Upf3bQ3ULL6 Ccdc22-201ENSMUST00000033483 2353 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Upf3bQ3ULL6 Cdc25c-201ENSMUST00000060710 1941 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Upf3bQ3ULL6 Glis2-201ENSMUST00000014447 3619 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Upf3bQ3ULL6 Snord83b-201ENSMUST00000104546 94 ntBASIC13.71□□□□□ -0.21
Upf3bQ3ULL6 Cdk4-202ENSMUST00000120226 714 ntTSL 5 BASIC13.71□□□□□ -0.21
Upf3bQ3ULL6 Gm13850-201ENSMUST00000140465 623 ntTSL 3 BASIC13.71□□□□□ -0.21
Upf3bQ3ULL6 Gm16282-201ENSMUST00000162641 451 ntTSL 3 BASIC13.71□□□□□ -0.21
Upf3bQ3ULL6 1700122O11Rik-201ENSMUST00000178823 771 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Upf3bQ3ULL6 AC022775.2-201ENSMUST00000227885 646 ntBASIC13.71□□□□□ -0.21
Upf3bQ3ULL6 AC140451.2-201ENSMUST00000228030 664 ntBASIC13.71□□□□□ -0.21
Upf3bQ3ULL6 Tatdn3-201ENSMUST00000027945 1196 ntAPPRIS ALT2 TSL 3 BASIC13.71□□□□□ -0.21
Upf3bQ3ULL6 Ebna1bp2-201ENSMUST00000030501 2960 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Upf3bQ3ULL6 Chchd1-201ENSMUST00000071215 616 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Upf3bQ3ULL6 Txndc2-201ENSMUST00000050236 1899 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Upf3bQ3ULL6 Tcf4-210ENSMUST00000128706 2066 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
Upf3bQ3ULL6 Plxnb2-202ENSMUST00000109331 6377 ntAPPRIS P1 TSL 5 BASIC13.71□□□□□ -0.22
Upf3bQ3ULL6 Zfp64-203ENSMUST00000109162 2848 ntAPPRIS P1 TSL 2 BASIC13.71□□□□□ -0.22
Upf3bQ3ULL6 Cdk10-212ENSMUST00000213005 1580 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
Upf3bQ3ULL6 Gm37324-201ENSMUST00000194500 4504 ntBASIC13.71□□□□□ -0.22
Upf3bQ3ULL6 Wnt9a-201ENSMUST00000000128 3320 ntAPPRIS ALT2 TSL 5 BASIC13.7□□□□□ -0.22
Upf3bQ3ULL6 Nup98-201ENSMUST00000070165 4052 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Upf3bQ3ULL6 Nlrc3-203ENSMUST00000177551 5403 ntAPPRIS P1 TSL 2 BASIC13.7□□□□□ -0.22
Upf3bQ3ULL6 Mypopos-202ENSMUST00000205975 2321 ntBASIC13.7□□□□□ -0.22
Upf3bQ3ULL6 Arhgap10-202ENSMUST00000210519 2295 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Upf3bQ3ULL6 Polr3e-202ENSMUST00000106483 3001 ntAPPRIS P3 TSL 5 BASIC13.7□□□□□ -0.22
Upf3bQ3ULL6 Fancc-201ENSMUST00000073029 3165 ntAPPRIS P3 TSL 1 (best) BASIC13.7□□□□□ -0.22
Upf3bQ3ULL6 Gm28043-201ENSMUST00000130871 6521 ntAPPRIS P1 TSL 2 BASIC13.7□□□□□ -0.22
Upf3bQ3ULL6 Gm44775-201ENSMUST00000207266 1456 ntBASIC13.7□□□□□ -0.22
Upf3bQ3ULL6 Dnajb4-201ENSMUST00000029669 1497 ntAPPRIS P1 TSL 5 BASIC13.7□□□□□ -0.22
Upf3bQ3ULL6 Pcca-201ENSMUST00000038374 2592 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Upf3bQ3ULL6 Eprs-201ENSMUST00000046514 4906 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Upf3bQ3ULL6 Gm14921-201ENSMUST00000118643 908 ntBASIC13.7□□□□□ -0.22
Upf3bQ3ULL6 Dgcr6-203ENSMUST00000143343 1280 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Upf3bQ3ULL6 Surf2-201ENSMUST00000015017 1203 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Upf3bQ3ULL6 Alms1-ps2-201ENSMUST00000160606 1170 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Upf3bQ3ULL6 Dcdc2b-203ENSMUST00000179209 864 ntAPPRIS P1 TSL 5 BASIC13.7□□□□□ -0.22
Upf3bQ3ULL6 AC158516.1-201ENSMUST00000213921 205 ntTSL 5 BASIC13.7□□□□□ -0.22
Upf3bQ3ULL6 Gm32025-201ENSMUST00000217960 307 ntBASIC13.7□□□□□ -0.22
Upf3bQ3ULL6 AC152453.1-201ENSMUST00000218802 1254 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Upf3bQ3ULL6 AC154305.4-201ENSMUST00000224520 614 ntBASIC13.7□□□□□ -0.22
Upf3bQ3ULL6 Tmem54-202ENSMUST00000030577 988 ntAPPRIS ALT2 TSL 3 BASIC13.7□□□□□ -0.22
Upf3bQ3ULL6 1700029I15Rik-201ENSMUST00000054316 364 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Upf3bQ3ULL6 Rnase2b-201ENSMUST00000075648 759 ntAPPRIS P1 BASIC13.7□□□□□ -0.22
Upf3bQ3ULL6 Olfr91-201ENSMUST00000087144 939 ntAPPRIS P1 BASIC13.7□□□□□ -0.22
Upf3bQ3ULL6 Pcgf1-201ENSMUST00000092614 866 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Upf3bQ3ULL6 Ccdc162-208ENSMUST00000179614 2739 ntTSL 5 BASIC13.7□□□□□ -0.22
Upf3bQ3ULL6 Ptp4a1-201ENSMUST00000027232 4145 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Upf3bQ3ULL6 Slitrk3-201ENSMUST00000059407 3587 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Upf3bQ3ULL6 Arvcf-201ENSMUST00000090103 4620 ntAPPRIS P3 TSL 1 (best) BASIC13.7□□□□□ -0.22
Upf3bQ3ULL6 2810429I04Rik-203ENSMUST00000181708 4769 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Upf3bQ3ULL6 Bcas3-201ENSMUST00000074875 2814 ntAPPRIS P3 TSL 5 BASIC13.7□□□□□ -0.22
Upf3bQ3ULL6 Arl14ep-201ENSMUST00000028536 3337 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Upf3bQ3ULL6 Vps4b-202ENSMUST00000112736 4539 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Upf3bQ3ULL6 Has3-203ENSMUST00000176144 4150 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Upf3bQ3ULL6 Nrg1-210ENSMUST00000208488 2403 ntAPPRIS P5 TSL 5 BASIC13.7□□□□□ -0.22
Upf3bQ3ULL6 Prkca-201ENSMUST00000059595 8409 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Upf3bQ3ULL6 Hnrnpk-232ENSMUST00000225674 2704 ntBASIC13.7□□□□□ -0.22
Upf3bQ3ULL6 Zbtb44-205ENSMUST00000216649 3157 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Upf3bQ3ULL6 Arhgap11a-201ENSMUST00000102545 4958 ntAPPRIS P2 TSL 5 BASIC13.69□□□□□ -0.22
Upf3bQ3ULL6 Dlk1-204ENSMUST00000109843 1300 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Upf3bQ3ULL6 Serpinb2-202ENSMUST00000064916 1996 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Upf3bQ3ULL6 Srr-202ENSMUST00000108447 3138 ntTSL 5 BASIC13.69□□□□□ -0.22
Upf3bQ3ULL6 Dnd1-201ENSMUST00000061522 1451 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Upf3bQ3ULL6 Adtrp-202ENSMUST00000121404 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Upf3bQ3ULL6 Vps36-201ENSMUST00000033866 3574 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Upf3bQ3ULL6 Setdb1-201ENSMUST00000015841 4658 ntAPPRIS P3 TSL 1 (best) BASIC13.69□□□□□ -0.22
Upf3bQ3ULL6 Gm42829-201ENSMUST00000198417 2585 ntBASIC13.69□□□□□ -0.22
Upf3bQ3ULL6 Slc6a20a-201ENSMUST00000040960 2732 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Upf3bQ3ULL6 Cabp5-202ENSMUST00000117400 1258 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Upf3bQ3ULL6 4933427G23Rik-202ENSMUST00000126393 544 ntBASIC13.69□□□□□ -0.22
Upf3bQ3ULL6 1700012C14Rik-201ENSMUST00000132023 498 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Upf3bQ3ULL6 Dlx1as-202ENSMUST00000137251 647 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Upf3bQ3ULL6 Snora78-201ENSMUST00000158630 128 ntBASIC13.69□□□□□ -0.22
Upf3bQ3ULL6 2010320O07Rik-201ENSMUST00000160935 525 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Upf3bQ3ULL6 Gm25927-201ENSMUST00000175058 117 ntBASIC13.69□□□□□ -0.22
Upf3bQ3ULL6 2810039B14Rik-206ENSMUST00000185040 1113 ntBASIC13.69□□□□□ -0.22
Upf3bQ3ULL6 Pced1c-ps-201ENSMUST00000187740 751 ntBASIC13.69□□□□□ -0.22
Upf3bQ3ULL6 Plin1-203ENSMUST00000205413 1294 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Upf3bQ3ULL6 Prss2-201ENSMUST00000070380 815 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Upf3bQ3ULL6 Snora73a-201ENSMUST00000082453 205 ntBASIC13.69□□□□□ -0.22
Upf3bQ3ULL6 Klhl38-201ENSMUST00000022985 2212 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Upf3bQ3ULL6 Ldhal6b-201ENSMUST00000189788 1445 ntAPPRIS P1 BASIC13.69□□□□□ -0.22
Upf3bQ3ULL6 Scube1-203ENSMUST00000076060 3913 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Upf3bQ3ULL6 C2cd4c-201ENSMUST00000059699 6729 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Upf3bQ3ULL6 AC116503.1-201ENSMUST00000215445 2192 ntBASIC13.69□□□□□ -0.22
Upf3bQ3ULL6 Snx14-207ENSMUST00000174806 3082 ntAPPRIS ALT2 TSL 5 BASIC13.69□□□□□ -0.22
Upf3bQ3ULL6 Rbl1-201ENSMUST00000029170 4862 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Upf3bQ3ULL6 Exosc2-201ENSMUST00000038474 1686 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Upf3bQ3ULL6 Scd2-201ENSMUST00000026221 5453 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Upf3bQ3ULL6 Pole3-201ENSMUST00000030091 1805 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Upf3bQ3ULL6 Cyp2b10-201ENSMUST00000005477 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Upf3bQ3ULL6 Gm16853-201ENSMUST00000181812 1986 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Upf3bQ3ULL6 Trp53i11-202ENSMUST00000111266 2703 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Upf3bQ3ULL6 Aph1a-201ENSMUST00000015894 2863 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Retrieved 100 of 76,532 protein–RNA pairs in 31.8 ms