Protein–RNA interactions for Protein: P70298

Cux2, Homeobox protein cut-like 2, mousemouse

Predictions only

Length 1,426 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux2P70298 Ccdc117-201ENSMUST00000020776 3372 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Cux2P70298 Twsg1-201ENSMUST00000024906 4046 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Cux2P70298 Cyth1-204ENSMUST00000106305 3179 ntAPPRIS ALT1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Cux2P70298 Heyl-201ENSMUST00000040821 4537 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Cux2P70298 Cachd1-202ENSMUST00000097955 4277 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
Cux2P70298 Tcea3-201ENSMUST00000102533 1251 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
Cux2P70298 Gm25063-201ENSMUST00000104666 94 ntBASIC20.52■□□□□ 0.87
Cux2P70298 Gm11752-201ENSMUST00000143291 510 ntTSL 2 BASIC20.52■□□□□ 0.87
Cux2P70298 Gm9116-201ENSMUST00000192400 1018 ntBASIC20.52■□□□□ 0.87
Cux2P70298 Crcp-204ENSMUST00000202163 931 ntTSL 2 BASIC20.52■□□□□ 0.87
Cux2P70298 Gm18204-201ENSMUST00000209835 793 ntBASIC20.52■□□□□ 0.87
Cux2P70298 Amtn-201ENSMUST00000073363 1022 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
Cux2P70298 Cpsf7-201ENSMUST00000038379 3604 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
Cux2P70298 Gm43721-201ENSMUST00000199677 2313 ntBASIC20.51■□□□□ 0.87
Cux2P70298 Urgcp-206ENSMUST00000170116 5528 ntAPPRIS ALT2 TSL 5 BASIC20.51■□□□□ 0.87
Cux2P70298 Usp43-201ENSMUST00000021288 4462 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
Cux2P70298 Hipk3-202ENSMUST00000111124 4125 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
Cux2P70298 Mff-209ENSMUST00000160972 1358 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Cux2P70298 Gm26867-201ENSMUST00000180963 3615 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Cux2P70298 Antxr2-201ENSMUST00000031281 5656 ntAPPRIS P2 TSL 1 (best) BASIC20.51■□□□□ 0.87
Cux2P70298 Sema3b-204ENSMUST00000102531 2958 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Cux2P70298 Rtn2-202ENSMUST00000108468 1076 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
Cux2P70298 1810021B22Rik-201ENSMUST00000150364 652 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Cux2P70298 Gm8815-201ENSMUST00000173809 620 ntBASIC20.51■□□□□ 0.87
Cux2P70298 Shisa5-205ENSMUST00000197099 742 ntTSL 3 BASIC20.51■□□□□ 0.87
Cux2P70298 Cdipt-202ENSMUST00000205830 805 ntTSL 2 BASIC20.51■□□□□ 0.87
Cux2P70298 Ssr4-201ENSMUST00000002090 765 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
Cux2P70298 Gm33979-201ENSMUST00000219486 691 ntTSL 5 BASIC20.51■□□□□ 0.87
Cux2P70298 Gm36074-201ENSMUST00000221383 591 ntTSL 5 BASIC20.51■□□□□ 0.87
Cux2P70298 Dubr-204ENSMUST00000186944 2052 ntTSL 2 BASIC20.51■□□□□ 0.87
Cux2P70298 Actn3-201ENSMUST00000006626 2880 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Cux2P70298 Gm12626-201ENSMUST00000117339 1983 ntBASIC20.51■□□□□ 0.87
Cux2P70298 Chst2-201ENSMUST00000036267 7328 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Cux2P70298 Plcb3-201ENSMUST00000025912 4201 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Cux2P70298 Tcf4-230ENSMUST00000201205 2270 ntTSL 5 BASIC20.5■□□□□ 0.87
Cux2P70298 Alg2-201ENSMUST00000044148 3021 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Cux2P70298 Epb41l2-201ENSMUST00000053748 4385 ntAPPRIS P2 TSL 1 (best) BASIC20.5■□□□□ 0.87
Cux2P70298 Rcbtb1-201ENSMUST00000022551 3957 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Cux2P70298 Gm13111-201ENSMUST00000136217 3542 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Cux2P70298 Asl-202ENSMUST00000159619 2088 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
Cux2P70298 Gm6903-201ENSMUST00000160509 1366 ntBASIC20.5■□□□□ 0.87
Cux2P70298 Mfge8-202ENSMUST00000107409 2008 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
Cux2P70298 Il2rg-201ENSMUST00000033664 1670 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Cux2P70298 Rtf1-201ENSMUST00000028767 4664 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Cux2P70298 Psmd2-201ENSMUST00000007212 2961 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Cux2P70298 Uqcc1-202ENSMUST00000109631 1091 ntAPPRIS ALT2 TSL 5 BASIC20.5■□□□□ 0.87
Cux2P70298 Gm12218-201ENSMUST00000117666 399 ntBASIC20.5■□□□□ 0.87
Cux2P70298 Gm12164-201ENSMUST00000121695 551 ntBASIC20.5■□□□□ 0.87
Cux2P70298 Gm15722-201ENSMUST00000159271 661 ntTSL 3 BASIC20.5■□□□□ 0.87
Cux2P70298 Mrpl23-ps1-201ENSMUST00000173086 580 ntBASIC20.5■□□□□ 0.87
Cux2P70298 Gm18367-201ENSMUST00000176139 600 ntBASIC20.5■□□□□ 0.87
Cux2P70298 Ly6e-203ENSMUST00000185861 838 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
Cux2P70298 Gm28166-201ENSMUST00000187637 620 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Cux2P70298 Gm8956-201ENSMUST00000203939 825 ntBASIC20.5■□□□□ 0.87
Cux2P70298 Gm18463-201ENSMUST00000207258 474 ntBASIC20.5■□□□□ 0.87
Cux2P70298 AC160028.1-201ENSMUST00000219645 1095 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Cux2P70298 Tmem220-202ENSMUST00000079077 1147 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
Cux2P70298 Zc3h12a-201ENSMUST00000036188 2755 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Cux2P70298 Poli-205ENSMUST00000161542 2736 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Cux2P70298 Srr-204ENSMUST00000121738 3183 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Cux2P70298 Wwp2-205ENSMUST00000212543 1996 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
Cux2P70298 Cbx6-202ENSMUST00000109625 3056 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
Cux2P70298 Sik2-201ENSMUST00000041375 3552 ntAPPRIS P2 TSL 1 (best) BASIC20.49■□□□□ 0.87
Cux2P70298 Vps29-208ENSMUST00000155671 2716 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
Cux2P70298 Adck1-202ENSMUST00000166940 2199 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Cux2P70298 Lrrc17-201ENSMUST00000035651 2154 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Cux2P70298 Hnrnpa2b1-204ENSMUST00000203220 1638 ntAPPRIS P2 TSL 1 (best) BASIC20.49■□□□□ 0.87
Cux2P70298 Anks1b-204ENSMUST00000179337 2692 ntTSL 5 BASIC20.49■□□□□ 0.87
Cux2P70298 E130018N17Rik-201ENSMUST00000129713 1309 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
Cux2P70298 Cobl-203ENSMUST00000109651 5541 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
Cux2P70298 Jade2-201ENSMUST00000020655 6273 ntAPPRIS P2 TSL 1 (best) BASIC20.49■□□□□ 0.87
Cux2P70298 Mtcl1-201ENSMUST00000086693 7221 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
Cux2P70298 Bcor-204ENSMUST00000115513 6941 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
Cux2P70298 Ighv8-9-201ENSMUST00000103533 301 ntAPPRIS P1 BASIC20.49■□□□□ 0.87
Cux2P70298 Ighv8-13-201ENSMUST00000103542 303 ntAPPRIS ALT2 BASIC20.49■□□□□ 0.87
Cux2P70298 Gm13267-201ENSMUST00000142787 698 ntTSL 3 BASIC20.49■□□□□ 0.87
Cux2P70298 Gm16081-201ENSMUST00000155992 684 ntTSL 3 BASIC20.49■□□□□ 0.87
Cux2P70298 Spdye4a-202ENSMUST00000160502 1245 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
Cux2P70298 Hcrtr1-204ENSMUST00000164887 1251 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
Cux2P70298 Ly6c1-202ENSMUST00000179762 838 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
Cux2P70298 Gm5714-201ENSMUST00000197343 566 ntBASIC20.49■□□□□ 0.87
Cux2P70298 AC124433.1-201ENSMUST00000224483 1063 ntBASIC20.49■□□□□ 0.87
Cux2P70298 CT025602.2-201ENSMUST00000226553 772 ntBASIC20.49■□□□□ 0.87
Cux2P70298 Slc35c2-204ENSMUST00000109300 2008 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Cux2P70298 Rpsa-201ENSMUST00000035105 1938 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Cux2P70298 Slmap-203ENSMUST00000102956 5476 ntAPPRIS P3 TSL 5 BASIC20.49■□□□□ 0.87
Cux2P70298 Gm13910-201ENSMUST00000121752 1428 ntBASIC20.49■□□□□ 0.87
Cux2P70298 Slc6a21-206ENSMUST00000210861 2838 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
Cux2P70298 Lrrfip1-202ENSMUST00000068167 2849 ntAPPRIS ALT2 TSL 5 BASIC20.49■□□□□ 0.87
Cux2P70298 Sass6-206ENSMUST00000198386 1894 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
Cux2P70298 Glis3-202ENSMUST00000112612 3016 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
Cux2P70298 Tuba1a-201ENSMUST00000097014 1647 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Cux2P70298 Rnf38-202ENSMUST00000098098 5061 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
Cux2P70298 1700003D09Rik-201ENSMUST00000141929 1389 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
Cux2P70298 Ciz1-203ENSMUST00000113332 2973 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
Cux2P70298 Kif5b-201ENSMUST00000025083 6032 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Cux2P70298 Ska1-201ENSMUST00000040188 2669 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Cux2P70298 Lime1-201ENSMUST00000048077 1959 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Cux2P70298 Plekha2-204ENSMUST00000128715 3463 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Cux2P70298 Npy5r-203ENSMUST00000212563 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Retrieved 100 of 76,532 protein–RNA pairs in 49.7 ms