Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 Gm16379-201ENSMUST00000161469 348 ntBASIC13.16□□□□□ -0.3
Vps28Q9D1C8 1700069L16Rik-203ENSMUST00000162388 706 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
Vps28Q9D1C8 Gm8762-201ENSMUST00000193486 339 ntBASIC13.16□□□□□ -0.3
Vps28Q9D1C8 Gm36634-201ENSMUST00000218356 1259 ntTSL 3 BASIC13.16□□□□□ -0.3
Vps28Q9D1C8 4930447A16Rik-201ENSMUST00000022897 587 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Vps28Q9D1C8 Ambp-201ENSMUST00000030041 1268 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Vps28Q9D1C8 Alkbh3-201ENSMUST00000040005 1228 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Vps28Q9D1C8 Nudt22-201ENSMUST00000041686 1000 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Vps28Q9D1C8 Olfr91-201ENSMUST00000087144 939 ntAPPRIS P1 BASIC13.16□□□□□ -0.3
Vps28Q9D1C8 Vmn1r65-201ENSMUST00000086338 2682 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Vps28Q9D1C8 A530020G20Rik-202ENSMUST00000181070 3660 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Vps28Q9D1C8 Acad12-202ENSMUST00000111776 2269 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Vps28Q9D1C8 Dennd4b-201ENSMUST00000098914 5423 ntAPPRIS P2 TSL 1 (best) BASIC13.16□□□□□ -0.3
Vps28Q9D1C8 Hspa4-201ENSMUST00000020630 4618 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Vps28Q9D1C8 Rtkn2-203ENSMUST00000117086 2246 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
Vps28Q9D1C8 D6Ertd527e-203ENSMUST00000203747 2216 ntAPPRIS ALT2 TSL 5 BASIC13.16□□□□□ -0.3
Vps28Q9D1C8 Cacna1g-204ENSMUST00000107785 7523 ntAPPRIS ALT2 TSL 5 BASIC13.16□□□□□ -0.3
Vps28Q9D1C8 Pkp3-201ENSMUST00000066873 2848 ntAPPRIS P3 TSL 1 (best) BASIC13.16□□□□□ -0.3
Vps28Q9D1C8 Tspan9-202ENSMUST00000112171 2584 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Vps28Q9D1C8 Ccdc85a-204ENSMUST00000109502 5220 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Vps28Q9D1C8 Gm9025-201ENSMUST00000122415 1575 ntBASIC13.15□□□□□ -0.3
Vps28Q9D1C8 Fbxo44-208ENSMUST00000167160 1572 ntAPPRIS P1 TSL 5 BASIC13.15□□□□□ -0.3
Vps28Q9D1C8 AC113060.1-201ENSMUST00000225689 1573 ntBASIC13.15□□□□□ -0.3
Vps28Q9D1C8 Ifnar2-201ENSMUST00000023693 3047 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.3
Vps28Q9D1C8 AC116503.1-201ENSMUST00000215445 2192 ntBASIC13.15□□□□□ -0.3
Vps28Q9D1C8 2310026I22Rik-201ENSMUST00000180941 1300 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Vps28Q9D1C8 Nagk-202ENSMUST00000113850 1918 ntTSL 5 BASIC13.15□□□□□ -0.3
Vps28Q9D1C8 2410131K14Rik-201ENSMUST00000049138 5649 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Vps28Q9D1C8 Igf1-203ENSMUST00000105300 1673 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Vps28Q9D1C8 Tnrc6c-201ENSMUST00000026658 8724 ntAPPRIS P1 TSL 5 BASIC13.15□□□□□ -0.3
Vps28Q9D1C8 Rab11fip1-202ENSMUST00000054212 7965 ntAPPRIS P3 TSL 5 BASIC13.15□□□□□ -0.3
Vps28Q9D1C8 Fbxw7-201ENSMUST00000029727 2221 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.3
Vps28Q9D1C8 Erg-201ENSMUST00000077773 2232 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Vps28Q9D1C8 Gm28043-201ENSMUST00000130871 6521 ntAPPRIS P1 TSL 2 BASIC13.15□□□□□ -0.3
Vps28Q9D1C8 Gm22018-201ENSMUST00000104357 131 ntBASIC13.15□□□□□ -0.3
Vps28Q9D1C8 Gm12167-201ENSMUST00000148132 578 ntTSL 2 BASIC13.15□□□□□ -0.3
Vps28Q9D1C8 Gm25261-201ENSMUST00000157416 134 ntBASIC13.15□□□□□ -0.3
Vps28Q9D1C8 Tmem52-204ENSMUST00000178188 908 ntAPPRIS ALT2 TSL 2 BASIC13.15□□□□□ -0.3
Vps28Q9D1C8 Tmem52-205ENSMUST00000178238 968 ntAPPRIS P4 TSL 1 (best) BASIC13.15□□□□□ -0.3
Vps28Q9D1C8 Gm38002-201ENSMUST00000193255 180 ntBASIC13.15□□□□□ -0.3
Vps28Q9D1C8 Crip2-202ENSMUST00000196015 772 ntTSL 3 BASIC13.15□□□□□ -0.3
Vps28Q9D1C8 Gm44756-201ENSMUST00000206172 1069 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Vps28Q9D1C8 Gm44974-201ENSMUST00000206387 1279 ntBASIC13.15□□□□□ -0.3
Vps28Q9D1C8 AC140406.1-201ENSMUST00000226481 465 ntBASIC13.15□□□□□ -0.3
Vps28Q9D1C8 Krtap19-2-201ENSMUST00000076186 605 ntAPPRIS P1 BASIC13.15□□□□□ -0.3
Vps28Q9D1C8 n-R5s195-201ENSMUST00000082891 119 ntBASIC13.15□□□□□ -0.3
Vps28Q9D1C8 Olfr1423-201ENSMUST00000087831 933 ntAPPRIS P1 BASIC13.15□□□□□ -0.3
Vps28Q9D1C8 Olfr707-201ENSMUST00000088687 924 ntAPPRIS P1 BASIC13.15□□□□□ -0.3
Vps28Q9D1C8 Olfr1532-ps1-201ENSMUST00000098140 924 ntAPPRIS P1 BASIC13.15□□□□□ -0.3
Vps28Q9D1C8 Smim13-201ENSMUST00000165561 4483 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Vps28Q9D1C8 Hp1bp3-201ENSMUST00000030541 3311 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.3
Vps28Q9D1C8 Ltbp4-204ENSMUST00000118961 3444 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Vps28Q9D1C8 Nars-201ENSMUST00000025483 2632 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Vps28Q9D1C8 Cpq-207ENSMUST00000228916 1842 ntAPPRIS P1 BASIC13.15□□□□□ -0.3
Vps28Q9D1C8 Pnck-203ENSMUST00000114473 1492 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Vps28Q9D1C8 Gm34006-202ENSMUST00000216467 1918 ntTSL 2 BASIC13.15□□□□□ -0.3
Vps28Q9D1C8 Slc29a1-203ENSMUST00000097317 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
Vps28Q9D1C8 Esr1-204ENSMUST00000105590 6339 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Vps28Q9D1C8 Nrf1-210ENSMUST00000115211 3295 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Vps28Q9D1C8 Prrt3-203ENSMUST00000204268 3741 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
Vps28Q9D1C8 Cd34-201ENSMUST00000016638 2454 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Vps28Q9D1C8 Mier3-203ENSMUST00000109272 5279 ntAPPRIS P2 TSL 1 (best) BASIC13.15□□□□□ -0.3
Vps28Q9D1C8 Senp5-201ENSMUST00000023457 3498 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Vps28Q9D1C8 Tmem254a-204ENSMUST00000185006 2147 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Vps28Q9D1C8 Ppp1r13l-201ENSMUST00000047621 3130 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.31
Vps28Q9D1C8 Astl-204ENSMUST00000179618 2236 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.31
Vps28Q9D1C8 Chrna10-201ENSMUST00000084830 2513 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Vps28Q9D1C8 Prkce-201ENSMUST00000097274 3161 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Vps28Q9D1C8 Bbof1-201ENSMUST00000081828 2187 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Vps28Q9D1C8 Padi2-201ENSMUST00000030765 4774 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Vps28Q9D1C8 Tnpo2-202ENSMUST00000166592 4884 ntAPPRIS P1 TSL 5 BASIC13.14□□□□□ -0.31
Vps28Q9D1C8 Mixl1-201ENSMUST00000027778 2294 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Vps28Q9D1C8 Setdb2-201ENSMUST00000095775 3034 ntAPPRIS ALT2 TSL 5 BASIC13.14□□□□□ -0.31
Vps28Q9D1C8 Mtch2-211ENSMUST00000150232 2377 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Vps28Q9D1C8 Gm43463-201ENSMUST00000195967 1803 ntBASIC13.14□□□□□ -0.31
Vps28Q9D1C8 B230369F24Rik-201ENSMUST00000141846 2560 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Vps28Q9D1C8 Fam71f2-201ENSMUST00000115286 1180 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Vps28Q9D1C8 Cbfa2t2-ps1-201ENSMUST00000117165 730 ntBASIC13.14□□□□□ -0.31
Vps28Q9D1C8 Mrps17-205ENSMUST00000119985 859 ntAPPRIS P1 TSL 2 BASIC13.14□□□□□ -0.31
Vps28Q9D1C8 Gm14704-201ENSMUST00000120300 874 ntBASIC13.14□□□□□ -0.31
Vps28Q9D1C8 Gm12347-201ENSMUST00000127883 470 ntTSL 3 BASIC13.14□□□□□ -0.31
Vps28Q9D1C8 Snhg20-201ENSMUST00000145438 459 ntTSL 3 BASIC13.14□□□□□ -0.31
Vps28Q9D1C8 Gm16191-202ENSMUST00000148464 484 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Vps28Q9D1C8 2010320O07Rik-201ENSMUST00000160935 525 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Vps28Q9D1C8 4930516B21Rik-201ENSMUST00000181600 1195 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Vps28Q9D1C8 Gm6222-202ENSMUST00000182143 629 ntBASIC13.14□□□□□ -0.31
Vps28Q9D1C8 AC160029.2-201ENSMUST00000218285 548 ntTSL 3 BASIC13.14□□□□□ -0.31
Vps28Q9D1C8 Rrp36-201ENSMUST00000024766 1195 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Vps28Q9D1C8 Rpl18a-201ENSMUST00000054220 1260 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Vps28Q9D1C8 Kcnd3-201ENSMUST00000079169 2102 ntAPPRIS P4 TSL 1 (best) BASIC13.14□□□□□ -0.31
Vps28Q9D1C8 Vrtn-202ENSMUST00000166772 3098 ntAPPRIS P1 TSL 3 BASIC13.14□□□□□ -0.31
Vps28Q9D1C8 Hsd17b6-201ENSMUST00000026462 1392 ntAPPRIS P1 TSL 5 BASIC13.14□□□□□ -0.31
Vps28Q9D1C8 Vcl-201ENSMUST00000022369 5267 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Vps28Q9D1C8 Prkce-202ENSMUST00000097275 6254 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Vps28Q9D1C8 Chrdl1-203ENSMUST00000112878 4050 ntAPPRIS ALT2 TSL 5 BASIC13.14□□□□□ -0.31
Vps28Q9D1C8 Ywhab-201ENSMUST00000018470 3013 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Vps28Q9D1C8 Cd33-201ENSMUST00000004728 1962 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
Vps28Q9D1C8 Clcn6-201ENSMUST00000030879 3306 ntAPPRIS P2 TSL 1 (best) BASIC13.14□□□□□ -0.31
Vps28Q9D1C8 Arhgap11a-201ENSMUST00000102545 4958 ntAPPRIS P2 TSL 5 BASIC13.14□□□□□ -0.31
Vps28Q9D1C8 Nup88-203ENSMUST00000108531 2453 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Retrieved 100 of 76,532 protein–RNA pairs in 49.5 ms