Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Styxl1-205ENSMUST00000111164 1243 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Usp40Q8BWR4 Sgsm1-203ENSMUST00000112324 1102 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Usp40Q8BWR4 Tmem267-202ENSMUST00000176171 880 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
Usp40Q8BWR4 Gm28882-201ENSMUST00000185504 314 ntBASIC17.53■□□□□ 0.4
Usp40Q8BWR4 Cdc34-208ENSMUST00000219791 799 ntTSL 3 BASIC17.53■□□□□ 0.4
Usp40Q8BWR4 Gzmn-202ENSMUST00000225535 989 ntBASIC17.53■□□□□ 0.4
Usp40Q8BWR4 Gm10076-201ENSMUST00000073238 384 ntBASIC17.53■□□□□ 0.4
Usp40Q8BWR4 Zfp932-201ENSMUST00000099484 451 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Usp40Q8BWR4 Ntn4-201ENSMUST00000020204 3646 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Usp40Q8BWR4 Prrt3-202ENSMUST00000204134 3424 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
Usp40Q8BWR4 Ltbp4-201ENSMUST00000038618 5386 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
Usp40Q8BWR4 Ahcyl2-205ENSMUST00000125911 2039 ntTSL 5 BASIC17.53■□□□□ 0.4
Usp40Q8BWR4 Cyp2b10-201ENSMUST00000005477 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
Usp40Q8BWR4 Pcdhgb8-202ENSMUST00000208907 2796 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
Usp40Q8BWR4 Ubqln2-201ENSMUST00000060714 3344 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
Usp40Q8BWR4 Cspg5-204ENSMUST00000197850 7868 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
Usp40Q8BWR4 Slc3a2-207ENSMUST00000206598 1393 ntTSL 2 BASIC17.53■□□□□ 0.4
Usp40Q8BWR4 Pcdha1-201ENSMUST00000070797 5248 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
Usp40Q8BWR4 Ptpn11-202ENSMUST00000100770 5599 ntAPPRIS ALT1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Usp40Q8BWR4 Sike1-201ENSMUST00000029447 7375 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Usp40Q8BWR4 Gm10176-201ENSMUST00000159707 2264 ntBASIC17.52■□□□□ 0.4
Usp40Q8BWR4 Rnpc3-202ENSMUST00000106535 2616 ntAPPRIS ALT1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Usp40Q8BWR4 6030442K20Rik-201ENSMUST00000180835 1540 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
Usp40Q8BWR4 Lypd1-202ENSMUST00000159417 6464 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Usp40Q8BWR4 Prkcsh-201ENSMUST00000003493 2012 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.4
Usp40Q8BWR4 Magi1-202ENSMUST00000089317 7209 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.4
Usp40Q8BWR4 Sv2c-203ENSMUST00000182289 2197 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
Usp40Q8BWR4 Gm19385-201ENSMUST00000214714 1813 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
Usp40Q8BWR4 Phactr3-204ENSMUST00000108916 2656 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
Usp40Q8BWR4 Wac-216ENSMUST00000171486 1608 ntTSL 5 BASIC17.52■□□□□ 0.4
Usp40Q8BWR4 Fnbp1-209ENSMUST00000113562 4515 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
Usp40Q8BWR4 Fam166b-203ENSMUST00000107929 865 ntAPPRIS P5 TSL 5 BASIC17.52■□□□□ 0.4
Usp40Q8BWR4 Gm4909-201ENSMUST00000118749 794 ntBASIC17.52■□□□□ 0.4
Usp40Q8BWR4 Gm14277-201ENSMUST00000121195 360 ntBASIC17.52■□□□□ 0.4
Usp40Q8BWR4 Gm13388-201ENSMUST00000126659 425 ntTSL 3 BASIC17.52■□□□□ 0.4
Usp40Q8BWR4 Tepp-204ENSMUST00000161029 968 ntAPPRIS P4 TSL 1 (best) BASIC17.52■□□□□ 0.4
Usp40Q8BWR4 Dnajc27-201ENSMUST00000020986 4698 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Usp40Q8BWR4 Bet1l-207ENSMUST00000211527 298 ntTSL 5 BASIC17.52■□□□□ 0.4
Usp40Q8BWR4 Gm33175-201ENSMUST00000211562 461 ntTSL 5 BASIC17.52■□□□□ 0.4
Usp40Q8BWR4 AC166344.1-202ENSMUST00000224139 234 ntBASIC17.52■□□□□ 0.4
Usp40Q8BWR4 Eif4g3-204ENSMUST00000105830 3252 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
Usp40Q8BWR4 Gm9881-201ENSMUST00000068783 3205 ntAPPRIS P1 BASIC17.52■□□□□ 0.39
Usp40Q8BWR4 Gm5939-201ENSMUST00000119613 2874 ntBASIC17.52■□□□□ 0.39
Usp40Q8BWR4 Kcnt1-211ENSMUST00000171268 3771 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.39
Usp40Q8BWR4 Mapk8-204ENSMUST00000111944 1528 ntAPPRIS ALT1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Usp40Q8BWR4 Ltbp4-204ENSMUST00000118961 3444 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
Usp40Q8BWR4 Mast3-201ENSMUST00000166004 5305 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
Usp40Q8BWR4 Clec16a-211ENSMUST00000155633 6213 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
Usp40Q8BWR4 Fbxw7-204ENSMUST00000107679 4473 ntAPPRIS ALT1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Usp40Q8BWR4 Nmral1-204ENSMUST00000120056 2440 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Usp40Q8BWR4 Gm20646-201ENSMUST00000176807 1316 ntTSL 3 BASIC17.51■□□□□ 0.39
Usp40Q8BWR4 Gm2694-202ENSMUST00000180806 1452 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Usp40Q8BWR4 Igha-202ENSMUST00000194738 2540 ntAPPRIS P5 BASIC17.51■□□□□ 0.39
Usp40Q8BWR4 Sgo2a-201ENSMUST00000027202 4939 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Usp40Q8BWR4 Fthl17d-201ENSMUST00000105004 856 ntAPPRIS P1 BASIC17.51■□□□□ 0.39
Usp40Q8BWR4 Gm13996-201ENSMUST00000118456 430 ntBASIC17.51■□□□□ 0.39
Usp40Q8BWR4 Gm14966-202ENSMUST00000129675 649 ntTSL 2 BASIC17.51■□□□□ 0.39
Usp40Q8BWR4 Mir17hg-201ENSMUST00000134140 3536 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Usp40Q8BWR4 Malat1-204ENSMUST00000173523 656 ntTSL 3 BASIC17.51■□□□□ 0.39
Usp40Q8BWR4 Erdr1-201ENSMUST00000177591 774 ntAPPRIS P5 TSL 5 BASIC17.51■□□□□ 0.39
Usp40Q8BWR4 S100a3-204ENSMUST00000200290 509 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Usp40Q8BWR4 Gm43050-201ENSMUST00000201062 338 ntTSL 2 BASIC17.51■□□□□ 0.39
Usp40Q8BWR4 Gm32633-201ENSMUST00000205726 587 ntTSL 3 BASIC17.51■□□□□ 0.39
Usp40Q8BWR4 Gm32141-201ENSMUST00000220189 488 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Usp40Q8BWR4 Scp2-201ENSMUST00000030340 2640 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Usp40Q8BWR4 Stpg3-201ENSMUST00000043774 1430 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
Usp40Q8BWR4 Olfr272-201ENSMUST00000051600 962 ntAPPRIS P1 BASIC17.51■□□□□ 0.39
Usp40Q8BWR4 Fam131b-202ENSMUST00000095974 3992 ntAPPRIS ALT1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Usp40Q8BWR4 Elp4-202ENSMUST00000122965 3048 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Usp40Q8BWR4 Pipox-201ENSMUST00000017597 1998 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Usp40Q8BWR4 H3f3a-205ENSMUST00000161308 2841 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
Usp40Q8BWR4 Bhmt-201ENSMUST00000099309 2490 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Usp40Q8BWR4 Arid4b-202ENSMUST00000110533 3020 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Usp40Q8BWR4 Rbm8a2-201ENSMUST00000104983 1338 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
Usp40Q8BWR4 Gm14963-201ENSMUST00000146751 2558 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Usp40Q8BWR4 Ripk3-201ENSMUST00000022830 1892 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Usp40Q8BWR4 Hps1-208ENSMUST00000162004 2847 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
Usp40Q8BWR4 Gm1661-203ENSMUST00000165128 1837 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
Usp40Q8BWR4 Gata4-201ENSMUST00000067417 3400 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
Usp40Q8BWR4 Gm11596-201ENSMUST00000105058 1079 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
Usp40Q8BWR4 Tmem50a-202ENSMUST00000105863 719 ntAPPRIS P1 TSL 3 BASIC17.5■□□□□ 0.39
Usp40Q8BWR4 Mymx-201ENSMUST00000113529 442 ntAPPRIS ALT2 TSL 2 BASIC17.5■□□□□ 0.39
Usp40Q8BWR4 Glmp-201ENSMUST00000001454 1017 ntTSL 5 BASIC17.5■□□□□ 0.39
Usp40Q8BWR4 Gm6963-201ENSMUST00000147879 379 ntBASIC17.5■□□□□ 0.39
Usp40Q8BWR4 Arf4os-201ENSMUST00000166902 566 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Usp40Q8BWR4 Gm5070-201ENSMUST00000177599 862 ntBASIC17.5■□□□□ 0.39
Usp40Q8BWR4 Rassf4-202ENSMUST00000203029 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
Usp40Q8BWR4 Gm44651-201ENSMUST00000207343 372 ntBASIC17.5■□□□□ 0.39
Usp40Q8BWR4 4930578M07Rik-202ENSMUST00000212946 552 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Usp40Q8BWR4 3300002I08Rik-201ENSMUST00000051153 650 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Usp40Q8BWR4 Adm2-201ENSMUST00000066991 1043 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Usp40Q8BWR4 Ccdc28a-202ENSMUST00000080860 1190 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Usp40Q8BWR4 Rnf14-202ENSMUST00000170811 2886 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Usp40Q8BWR4 Pex19-201ENSMUST00000075895 1917 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Usp40Q8BWR4 6430550D23Rik-201ENSMUST00000086145 1520 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
Usp40Q8BWR4 Zfp819-203ENSMUST00000120935 2156 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Usp40Q8BWR4 Rnps1-201ENSMUST00000088512 1798 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Usp40Q8BWR4 Ano6-201ENSMUST00000071874 4927 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
Usp40Q8BWR4 Clcn4-203ENSMUST00000210061 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
Usp40Q8BWR4 Eme1-201ENSMUST00000039949 2444 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Retrieved 100 of 76,532 protein–RNA pairs in 66.7 ms