Protein–RNA interactions for Protein: Q04857

Col6a1, Collagen alpha-1(VI) chain, mousemouse

Predictions only

Length 1,025 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a1Q04857 Gm5051-201ENSMUST00000204085 485 ntBASIC14.18□□□□□ -0.14
Col6a1Q04857 4933436H12Rik-201ENSMUST00000207304 658 ntTSL 5 BASIC14.18□□□□□ -0.14
Col6a1Q04857 Hrc-202ENSMUST00000211327 607 ntTSL 5 BASIC14.18□□□□□ -0.14
Col6a1Q04857 Zfp36l1-203ENSMUST00000218835 292 ntTSL 3 BASIC14.18□□□□□ -0.14
Col6a1Q04857 Gm32141-201ENSMUST00000220189 488 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Col6a1Q04857 CT025694.1-201ENSMUST00000226188 934 ntBASIC14.18□□□□□ -0.14
Col6a1Q04857 AC161537.1-201ENSMUST00000226199 1015 ntBASIC14.18□□□□□ -0.14
Col6a1Q04857 Trex2-201ENSMUST00000033738 1017 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Col6a1Q04857 Tspan8-201ENSMUST00000035563 1244 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Col6a1Q04857 Olfr283-201ENSMUST00000057386 1102 ntAPPRIS P1 BASIC14.18□□□□□ -0.14
Col6a1Q04857 Spred3-201ENSMUST00000048923 4056 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Col6a1Q04857 Klhl32-204ENSMUST00000108218 7143 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
Col6a1Q04857 Rcor2-202ENSMUST00000113369 2013 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Col6a1Q04857 Armcx6-202ENSMUST00000113194 2120 ntAPPRIS P1 TSL 2 BASIC14.18□□□□□ -0.14
Col6a1Q04857 Dlgap1-208ENSMUST00000135938 2895 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Col6a1Q04857 Efemp2-209ENSMUST00000167371 1382 ntTSL 5 BASIC14.18□□□□□ -0.14
Col6a1Q04857 Dpysl4-202ENSMUST00000121184 2727 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Col6a1Q04857 Gm37795-201ENSMUST00000194216 2459 ntBASIC14.18□□□□□ -0.14
Col6a1Q04857 Phldb1-213ENSMUST00000144251 3589 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Col6a1Q04857 Rtn3-203ENSMUST00000088169 1709 ntTSL 5 BASIC14.18□□□□□ -0.14
Col6a1Q04857 Zfp583-201ENSMUST00000062765 2550 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Col6a1Q04857 Stpg2-202ENSMUST00000106239 2055 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
Col6a1Q04857 Gm9920-204ENSMUST00000148544 2752 ntTSL 2 BASIC14.17□□□□□ -0.14
Col6a1Q04857 Ap2a1-204ENSMUST00000167930 3376 ntTSL 5 BASIC14.17□□□□□ -0.14
Col6a1Q04857 Crry-ps-201ENSMUST00000079090 1309 ntBASIC14.17□□□□□ -0.14
Col6a1Q04857 Nek6-203ENSMUST00000112902 3147 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Col6a1Q04857 Slc25a22-202ENSMUST00000106006 2277 ntTSL 5 BASIC14.17□□□□□ -0.14
Col6a1Q04857 Dnajc30-201ENSMUST00000071263 1661 ntAPPRIS P1 BASIC14.17□□□□□ -0.14
Col6a1Q04857 Plcb2-202ENSMUST00000102524 5145 ntAPPRIS P3 TSL 2 BASIC14.17□□□□□ -0.14
Col6a1Q04857 Adra1b-201ENSMUST00000067258 3331 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Col6a1Q04857 Pkp3-201ENSMUST00000066873 2848 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
Col6a1Q04857 Dnaaf1-201ENSMUST00000093100 2821 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Col6a1Q04857 Mir17hg-201ENSMUST00000134140 3536 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Col6a1Q04857 H2-T22-201ENSMUST00000058801 1534 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Col6a1Q04857 Mpp4-210ENSMUST00000191200 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Col6a1Q04857 Amotl2-201ENSMUST00000035121 4328 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Col6a1Q04857 Cux2-210ENSMUST00000168288 4697 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
Col6a1Q04857 Arl4a-205ENSMUST00000146905 3710 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Col6a1Q04857 Aire-202ENSMUST00000105395 1630 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Col6a1Q04857 C230066G23Rik-201ENSMUST00000150195 650 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Col6a1Q04857 Cox16-206ENSMUST00000168463 431 ntTSL 2 BASIC14.17□□□□□ -0.14
Col6a1Q04857 1110002L01Rik-203ENSMUST00000179637 586 ntTSL 5 BASIC14.17□□□□□ -0.14
Col6a1Q04857 Gm5597-201ENSMUST00000182353 1193 ntBASIC14.17□□□□□ -0.14
Col6a1Q04857 2310002L09Rik-201ENSMUST00000030101 958 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
Col6a1Q04857 2410015M20Rik-201ENSMUST00000052832 755 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Col6a1Q04857 Mrps21-201ENSMUST00000067298 488 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Col6a1Q04857 Olfr887-201ENSMUST00000074681 930 ntAPPRIS P1 BASIC14.17□□□□□ -0.14
Col6a1Q04857 Vmn1r213-201ENSMUST00000076897 1155 ntAPPRIS P2 BASIC14.17□□□□□ -0.14
Col6a1Q04857 Pi4kb-201ENSMUST00000072287 3692 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Col6a1Q04857 Gm10729-202ENSMUST00000193403 1375 ntBASIC14.17□□□□□ -0.14
Col6a1Q04857 Mgat3-201ENSMUST00000044970 4665 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Col6a1Q04857 Slc7a7-206ENSMUST00000197440 2278 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Col6a1Q04857 Gstcd-202ENSMUST00000080583 2394 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Col6a1Q04857 Gad2-201ENSMUST00000028123 5744 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Col6a1Q04857 Cbl-206ENSMUST00000206147 3452 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
Col6a1Q04857 Traf1-202ENSMUST00000113064 2325 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Col6a1Q04857 Atxn2l-201ENSMUST00000040202 3853 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
Col6a1Q04857 Lrrc8a-202ENSMUST00000113654 4194 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
Col6a1Q04857 Actrt2-201ENSMUST00000060062 1435 ntAPPRIS P1 BASIC14.16□□□□□ -0.14
Col6a1Q04857 Gspt1-205ENSMUST00000167571 3716 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Col6a1Q04857 Zfp777-201ENSMUST00000095944 3184 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Col6a1Q04857 4833439L19Rik-201ENSMUST00000026989 2727 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Col6a1Q04857 Dnmt1-207ENSMUST00000216540 5543 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Col6a1Q04857 Fktn-204ENSMUST00000221657 6241 ntTSL 5 BASIC14.16□□□□□ -0.14
Col6a1Q04857 Gm37437-201ENSMUST00000194451 1937 ntBASIC14.16□□□□□ -0.14
Col6a1Q04857 Sh2d5-202ENSMUST00000105824 3512 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Col6a1Q04857 Lag3-201ENSMUST00000032217 2001 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Col6a1Q04857 Gm11596-201ENSMUST00000105058 1079 ntAPPRIS P1 BASIC14.16□□□□□ -0.14
Col6a1Q04857 6030468B19Rik-201ENSMUST00000106331 1071 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Col6a1Q04857 Tmem53-203ENSMUST00000106434 923 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Col6a1Q04857 Cox16-202ENSMUST00000110340 668 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Col6a1Q04857 Tmed5-203ENSMUST00000117759 482 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Col6a1Q04857 Gm8566-201ENSMUST00000120174 465 ntBASIC14.16□□□□□ -0.14
Col6a1Q04857 Gm12539-201ENSMUST00000121549 1098 ntBASIC14.16□□□□□ -0.14
Col6a1Q04857 Rtbdn-203ENSMUST00000121880 1223 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Col6a1Q04857 1700003G13Rik-202ENSMUST00000131342 705 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Col6a1Q04857 Dnajc25-204ENSMUST00000152199 1141 ntTSL 5 BASIC14.16□□□□□ -0.14
Col6a1Q04857 Sap25-201ENSMUST00000166099 1101 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Col6a1Q04857 1700031P21Rik-203ENSMUST00000191400 466 ntTSL 3 BASIC14.16□□□□□ -0.14
Col6a1Q04857 Gm44545-201ENSMUST00000208262 746 ntBASIC14.16□□□□□ -0.14
Col6a1Q04857 Ppcdc-207ENSMUST00000214339 738 ntTSL 2 BASIC14.16□□□□□ -0.14
Col6a1Q04857 Tmem247-201ENSMUST00000042172 752 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Col6a1Q04857 Il17c-201ENSMUST00000050963 719 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Col6a1Q04857 Nme8-202ENSMUST00000091763 2122 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Col6a1Q04857 Pip5k1c-201ENSMUST00000045469 4323 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Col6a1Q04857 Arap1-204ENSMUST00000107010 5147 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Col6a1Q04857 Slc11a2-201ENSMUST00000023774 3025 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
Col6a1Q04857 Chfr-201ENSMUST00000014812 3146 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
Col6a1Q04857 Gm26777-201ENSMUST00000181852 2573 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Col6a1Q04857 Src-202ENSMUST00000092576 3887 ntTSL 5 BASIC14.16□□□□□ -0.14
Col6a1Q04857 AC079680.2-201ENSMUST00000219181 1306 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Col6a1Q04857 Nrp2-204ENSMUST00000102822 6708 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Col6a1Q04857 Acta1-201ENSMUST00000034453 1446 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Col6a1Q04857 Pds5b-201ENSMUST00000016569 7417 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
Col6a1Q04857 Hdgfl2-210ENSMUST00000225843 2238 ntAPPRIS ALT2 BASIC14.15□□□□□ -0.14
Col6a1Q04857 Txlng-203ENSMUST00000112315 2525 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Col6a1Q04857 Mkrn1-201ENSMUST00000031985 3046 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
Col6a1Q04857 Timp3-201ENSMUST00000020234 4722 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Col6a1Q04857 2900026A02Rik-201ENSMUST00000050125 5876 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
Col6a1Q04857 Bap1-201ENSMUST00000022458 3460 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Retrieved 100 of 76,532 protein–RNA pairs in 55.7 ms