Protein–RNA interactions for Protein: P70298

Cux2, Homeobox protein cut-like 2, mousemouse

Predictions only

Length 1,426 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux2P70298 Gm11836-201ENSMUST00000121022 441 ntBASIC20.55■□□□□ 0.88
Cux2P70298 BB557941-201ENSMUST00000126549 1097 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Cux2P70298 Smim1-204ENSMUST00000130175 477 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
Cux2P70298 Gm15764-201ENSMUST00000150389 672 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Cux2P70298 Gm29410-201ENSMUST00000188383 694 ntBASIC20.55■□□□□ 0.88
Cux2P70298 Gm45594-201ENSMUST00000211717 241 ntBASIC20.55■□□□□ 0.88
Cux2P70298 Nat8f6-201ENSMUST00000087656 925 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Cux2P70298 Gm9867-201ENSMUST00000192212 2647 ntBASIC20.55■□□□□ 0.88
Cux2P70298 Slc24a3-202ENSMUST00000110007 4048 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
Cux2P70298 Fuca2-201ENSMUST00000060212 2007 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Cux2P70298 Clptm1-201ENSMUST00000055242 4143 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Cux2P70298 Got1-201ENSMUST00000026196 2058 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Cux2P70298 Cog8-202ENSMUST00000095517 4476 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Cux2P70298 Zswim8-201ENSMUST00000022358 6073 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
Cux2P70298 Arfgap1-205ENSMUST00000108862 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
Cux2P70298 Gm10681-202ENSMUST00000178221 1605 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
Cux2P70298 BC030500-201ENSMUST00000062978 1605 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Cux2P70298 Ttc33-203ENSMUST00000118193 1671 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Cux2P70298 Rnf31-201ENSMUST00000019443 3485 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Cux2P70298 Pja1-205ENSMUST00000167246 2666 ntAPPRIS P4 TSL 1 (best) BASIC20.55■□□□□ 0.88
Cux2P70298 Ldlrad3-201ENSMUST00000058790 3833 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Cux2P70298 Npc2-201ENSMUST00000021668 3299 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Cux2P70298 Acad12-202ENSMUST00000111776 2269 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Cux2P70298 Creb3l3-201ENSMUST00000117422 2294 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Cux2P70298 Gm13822-201ENSMUST00000127563 346 ntTSL 3 BASIC20.54■□□□□ 0.88
Cux2P70298 Apoe-210ENSMUST00000174710 514 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Cux2P70298 Znhit6-206ENSMUST00000199033 1127 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
Cux2P70298 Tnfsf13b-201ENSMUST00000033892 1239 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
Cux2P70298 Wasf2-201ENSMUST00000084241 5642 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Cux2P70298 Mapk9-205ENSMUST00000109179 4682 ntTSL 5 BASIC20.54■□□□□ 0.88
Cux2P70298 Mapk9-209ENSMUST00000164643 4682 ntTSL 5 BASIC20.54■□□□□ 0.88
Cux2P70298 Mapk9-210ENSMUST00000178543 4677 ntAPPRIS ALT1 TSL 5 BASIC20.54■□□□□ 0.88
Cux2P70298 Gm44929-202ENSMUST00000209134 1653 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Cux2P70298 Ankrd53-201ENSMUST00000014891 1739 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Cux2P70298 Tekt3-201ENSMUST00000035732 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Cux2P70298 Ulk1-211ENSMUST00000200299 3581 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
Cux2P70298 Kcnd3-202ENSMUST00000098761 7169 ntAPPRIS ALT1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Cux2P70298 5530401A14Rik-201ENSMUST00000021044 1836 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Cux2P70298 Creb3-201ENSMUST00000102944 1884 ntAPPRIS P2 TSL 1 (best) BASIC20.54■□□□□ 0.88
Cux2P70298 Zkscan3-204ENSMUST00000117721 5788 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Cux2P70298 Irak3-201ENSMUST00000020448 3097 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Cux2P70298 Pus7-201ENSMUST00000119946 3407 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
Cux2P70298 Ppp1r2-201ENSMUST00000060188 4078 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Cux2P70298 Ndel1-202ENSMUST00000101017 1646 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Cux2P70298 B4galt3-202ENSMUST00000111313 2098 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Cux2P70298 Nr1h3-203ENSMUST00000111355 1672 ntTSL 5 BASIC20.53■□□□□ 0.88
Cux2P70298 Ddx55-202ENSMUST00000111438 2737 ntTSL 2 BASIC20.53■□□□□ 0.88
Cux2P70298 Dnajb6-203ENSMUST00000114839 1605 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Cux2P70298 1700037C18Rik-202ENSMUST00000115859 2592 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
Cux2P70298 Gm11470-201ENSMUST00000118868 1475 ntBASIC20.53■□□□□ 0.88
Cux2P70298 Ahcyl2-205ENSMUST00000125911 2039 ntTSL 5 BASIC20.53■□□□□ 0.88
Cux2P70298 Snhg17-203ENSMUST00000141809 1553 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Cux2P70298 Mfsd11-212ENSMUST00000153084 1194 ntTSL 5 BASIC20.53■□□□□ 0.88
Cux2P70298 Mest-211ENSMUST00000163949 2561 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
Cux2P70298 Tmem39a-214ENSMUST00000171687 2667 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Cux2P70298 Nlrp5-ps-202ENSMUST00000173220 1294 ntBASIC20.53■□□□□ 0.88
Cux2P70298 Gm26838-201ENSMUST00000180485 911 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Cux2P70298 Gm17798-201ENSMUST00000182282 1035 ntBASIC20.53■□□□□ 0.88
Cux2P70298 Gm45079-201ENSMUST00000205627 461 ntTSL 3 BASIC20.53■□□□□ 0.88
Cux2P70298 AC168279.1-201ENSMUST00000214611 382 ntBASIC20.53■□□□□ 0.88
Cux2P70298 Gm10318-202ENSMUST00000217996 639 ntTSL 5 BASIC20.53■□□□□ 0.88
Cux2P70298 Ptdss1-201ENSMUST00000021990 3424 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Cux2P70298 AC154257.1-202ENSMUST00000224729 843 ntBASIC20.53■□□□□ 0.88
Cux2P70298 Rpl4-201ENSMUST00000034966 1538 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Cux2P70298 Ankrd13b-202ENSMUST00000092892 3336 ntAPPRIS P2 TSL 5 BASIC20.53■□□□□ 0.88
Cux2P70298 Zfp575-201ENSMUST00000094705 2741 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Cux2P70298 Skor1-202ENSMUST00000116613 3591 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
Cux2P70298 Map6-203ENSMUST00000122101 3233 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
Cux2P70298 Ythdf3-203ENSMUST00000191774 3196 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Cux2P70298 Hpse-201ENSMUST00000045617 3117 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
Cux2P70298 Crtc3-201ENSMUST00000122255 5115 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Cux2P70298 Ip6k2-201ENSMUST00000085018 1846 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
Cux2P70298 Thrb-203ENSMUST00000091471 1758 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Cux2P70298 Luc7l3-201ENSMUST00000021226 3373 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Cux2P70298 Cyp2d34-201ENSMUST00000109515 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Cux2P70298 Adgrb2-201ENSMUST00000030571 4734 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
Cux2P70298 Gpsm1-203ENSMUST00000078616 3127 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Cux2P70298 Gm15784-201ENSMUST00000120260 1462 ntBASIC20.53■□□□□ 0.88
Cux2P70298 Ecsit-203ENSMUST00000179422 1462 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Cux2P70298 Ankrd6-204ENSMUST00000084750 4444 ntAPPRIS P2 TSL 5 BASIC20.53■□□□□ 0.88
Cux2P70298 Pcgf2-202ENSMUST00000103148 1438 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
Cux2P70298 Retreg1-206ENSMUST00000228306 1430 ntBASIC20.53■□□□□ 0.88
Cux2P70298 Mapk8ip3-208ENSMUST00000121787 5431 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
Cux2P70298 Gm14193-201ENSMUST00000105067 153 ntBASIC20.53■□□□□ 0.88
Cux2P70298 Cenpx-203ENSMUST00000106154 873 ntTSL 2 BASIC20.53■□□□□ 0.88
Cux2P70298 Gm15036-201ENSMUST00000118880 400 ntBASIC20.53■□□□□ 0.88
Cux2P70298 1700008A23Rik-201ENSMUST00000191694 691 ntBASIC20.53■□□□□ 0.88
Cux2P70298 Gm17590-202ENSMUST00000197881 1232 ntTSL 2 BASIC20.53■□□□□ 0.88
Cux2P70298 AC118476.3-201ENSMUST00000216419 1219 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Cux2P70298 Gm5705-201ENSMUST00000066241 711 ntBASIC20.53■□□□□ 0.88
Cux2P70298 Gm8894-201ENSMUST00000074642 666 ntBASIC20.53■□□□□ 0.88
Cux2P70298 Tdrd7-201ENSMUST00000102929 3716 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
Cux2P70298 Prrg3-203ENSMUST00000170096 3408 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Cux2P70298 Snph-204ENSMUST00000109877 3367 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
Cux2P70298 Gm45470-202ENSMUST00000210817 2192 ntTSL 5 BASIC20.52■□□□□ 0.88
Cux2P70298 Sybu-201ENSMUST00000090057 3230 ntAPPRIS P4 TSL 1 (best) BASIC20.52■□□□□ 0.88
Cux2P70298 Rfx5-201ENSMUST00000029772 4189 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Cux2P70298 Ficd-201ENSMUST00000065698 3133 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Cux2P70298 Abhd15-201ENSMUST00000094004 2662 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Cux2P70298 Slc6a18-204ENSMUST00000220650 1728 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
Retrieved 100 of 76,532 protein–RNA pairs in 27.5 ms