Protein–RNA interactions for Protein: P11260

Lire1, LINE-1 retrotransposable element ORF1 protein, mousemouse

Predictions only

Length 357 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lire1P11260 Hvcn1-201ENSMUST00000072602 2790 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Lire1P11260 Gm10419-202ENSMUST00000196693 2530 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Lire1P11260 Slc13a2-201ENSMUST00000001122 2412 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Lire1P11260 Snrk-203ENSMUST00000120173 4758 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Lire1P11260 Poll-201ENSMUST00000026239 2324 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Lire1P11260 Gm37513-201ENSMUST00000194830 2268 ntBASIC12.23□□□□□ -0.45
Lire1P11260 Gm38378-201ENSMUST00000195153 2268 ntBASIC12.23□□□□□ -0.45
Lire1P11260 Rims3-202ENSMUST00000106283 6437 ntAPPRIS P1 TSL 5 BASIC12.23□□□□□ -0.45
Lire1P11260 Amotl2-211ENSMUST00000153965 4222 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.45
Lire1P11260 Gm12020-201ENSMUST00000119030 2042 ntBASIC12.23□□□□□ -0.45
Lire1P11260 Gm28729-201ENSMUST00000190704 1964 ntAPPRIS P1 TSL 5 BASIC12.23□□□□□ -0.45
Lire1P11260 Sowahb-201ENSMUST00000061328 3900 ntAPPRIS P1 BASIC12.23□□□□□ -0.45
Lire1P11260 Gm28386-201ENSMUST00000189147 1849 ntBASIC12.23□□□□□ -0.45
Lire1P11260 Slc39a9-208ENSMUST00000219706 5427 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Lire1P11260 Mpp1-202ENSMUST00000114091 1558 ntTSL 2 BASIC12.23□□□□□ -0.45
Lire1P11260 Osbpl9-202ENSMUST00000084366 3134 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Lire1P11260 Kcnq1-202ENSMUST00000185383 1535 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Lire1P11260 Sirt3-201ENSMUST00000026559 1461 ntAPPRIS P2 TSL 1 (best) BASIC12.23□□□□□ -0.45
Lire1P11260 Clec4g-201ENSMUST00000058040 1441 ntTSL 5 BASIC12.23□□□□□ -0.45
Lire1P11260 Clpx-202ENSMUST00000113824 2809 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Lire1P11260 Klhl29-202ENSMUST00000218384 2716 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Lire1P11260 Mark4-201ENSMUST00000085715 3886 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Lire1P11260 Crybb2-202ENSMUST00000112336 906 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Lire1P11260 Ift20-203ENSMUST00000128788 1141 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Lire1P11260 Rsf1os2-203ENSMUST00000155074 998 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Lire1P11260 Iqcf1-202ENSMUST00000164965 523 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.45
Lire1P11260 Dap-204ENSMUST00000186425 597 ntTSL 3 BASIC12.23□□□□□ -0.45
Lire1P11260 4930518P08Rik-201ENSMUST00000221281 1187 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Lire1P11260 Haus7-202ENSMUST00000077243 1032 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.45
Lire1P11260 Gm8973-201ENSMUST00000079818 315 ntAPPRIS P1 BASIC12.23□□□□□ -0.45
Lire1P11260 Plpp4-201ENSMUST00000094018 1256 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Lire1P11260 Scg3-201ENSMUST00000034699 2384 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Lire1P11260 Gm39822-201ENSMUST00000212253 2284 ntTSL 5 BASIC12.23□□□□□ -0.45
Lire1P11260 Gtf2ird1-207ENSMUST00000111245 3299 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.45
Lire1P11260 Sh3bp2-202ENSMUST00000101316 3031 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.45
Lire1P11260 4930513N10Rik-204ENSMUST00000212647 3957 ntBASIC12.23□□□□□ -0.45
Lire1P11260 Cacna2d1-201ENSMUST00000039370 3933 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Lire1P11260 Pde1c-201ENSMUST00000044505 3907 ntAPPRIS P4 TSL 1 (best) BASIC12.23□□□□□ -0.45
Lire1P11260 Glmn-202ENSMUST00000082121 1945 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Lire1P11260 Ptp4a3-202ENSMUST00000163582 3808 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Lire1P11260 Trim25-203ENSMUST00000107896 5590 ntAPPRIS P2 TSL 1 (best) BASIC12.23□□□□□ -0.45
Lire1P11260 Plcd1-203ENSMUST00000214470 2706 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Lire1P11260 Cggbp1-201ENSMUST00000067744 4425 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Lire1P11260 Tcf7l2-207ENSMUST00000111653 2629 ntAPPRIS ALT2 TSL 2 BASIC12.23□□□□□ -0.45
Lire1P11260 Mpl-203ENSMUST00000106375 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.45
Lire1P11260 Etaa1-201ENSMUST00000076661 4185 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Lire1P11260 Nfe2-205ENSMUST00000133600 1605 ntTSL 5 BASIC12.22□□□□□ -0.45
Lire1P11260 Incenp-201ENSMUST00000025562 3217 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Lire1P11260 Gpr139-201ENSMUST00000084650 4843 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Lire1P11260 B3galt4-201ENSMUST00000087543 1569 ntAPPRIS P1 BASIC12.22□□□□□ -0.45
Lire1P11260 Acacb-201ENSMUST00000031583 8482 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Lire1P11260 Pold3-201ENSMUST00000032969 3069 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Lire1P11260 Zfp296-201ENSMUST00000108453 1530 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Lire1P11260 Tmx2-203ENSMUST00000111665 2282 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Lire1P11260 Gm9816-201ENSMUST00000122292 1414 ntBASIC12.22□□□□□ -0.45
Lire1P11260 Thtpa-201ENSMUST00000050575 2830 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Lire1P11260 Dcaf1-202ENSMUST00000159645 4945 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Lire1P11260 Dmbt1-202ENSMUST00000208311 6272 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
Lire1P11260 Reps2-201ENSMUST00000101102 7630 ntAPPRIS P3 TSL 1 (best) BASIC12.22□□□□□ -0.45
Lire1P11260 Irak1-203ENSMUST00000101458 2052 ntAPPRIS ALT2 TSL 5 BASIC12.22□□□□□ -0.45
Lire1P11260 Umad1-208ENSMUST00000162034 2015 ntAPPRIS ALT2 TSL 3 BASIC12.22□□□□□ -0.45
Lire1P11260 AW209491-202ENSMUST00000178289 2035 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Lire1P11260 AC122840.1-201ENSMUST00000220915 3334 ntBASIC12.22□□□□□ -0.45
Lire1P11260 Ptpn7-203ENSMUST00000187985 1990 ntAPPRIS P1 TSL 5 BASIC12.22□□□□□ -0.45
Lire1P11260 Shc1-201ENSMUST00000039110 3250 ntAPPRIS P3 TSL 1 (best) BASIC12.22□□□□□ -0.45
Lire1P11260 Evi5l-203ENSMUST00000176149 3938 ntAPPRIS ALT2 TSL 5 BASIC12.22□□□□□ -0.45
Lire1P11260 Lrriq1-203ENSMUST00000166240 5232 ntAPPRIS P1 TSL 5 BASIC12.22□□□□□ -0.45
Lire1P11260 Tssc4-202ENSMUST00000105920 895 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Lire1P11260 Dlk1-202ENSMUST00000109841 879 ntTSL 5 BASIC12.22□□□□□ -0.45
Lire1P11260 Lsm2-202ENSMUST00000114011 840 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Lire1P11260 Dnase1l1-203ENSMUST00000114189 755 ntTSL 3 BASIC12.22□□□□□ -0.45
Lire1P11260 Gm12390-201ENSMUST00000117897 397 ntBASIC12.22□□□□□ -0.45
Lire1P11260 Rab11fip4os2-201ENSMUST00000123067 689 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Lire1P11260 Gm15420-201ENSMUST00000133274 382 ntTSL 3 BASIC12.22□□□□□ -0.45
Lire1P11260 Surf2-201ENSMUST00000015017 1203 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Lire1P11260 Pmepa1os-201ENSMUST00000150185 680 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Lire1P11260 Nat8f4-202ENSMUST00000159755 1129 ntTSL 2 BASIC12.22□□□□□ -0.45
Lire1P11260 Gm3764-203ENSMUST00000180635 1191 ntTSL 5 BASIC12.22□□□□□ -0.45
Lire1P11260 Carmn-202ENSMUST00000182244 988 ntTSL 2 BASIC12.22□□□□□ -0.45
Lire1P11260 1700030C10Rik-202ENSMUST00000186243 126 ntBASIC12.22□□□□□ -0.45
Lire1P11260 Gm29481-201ENSMUST00000189080 1049 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Lire1P11260 Gm32926-202ENSMUST00000215162 1176 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Lire1P11260 AC159474.1-201ENSMUST00000218454 374 ntTSL 3 BASIC12.22□□□□□ -0.45
Lire1P11260 Snx24-201ENSMUST00000025417 994 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Lire1P11260 Mettl26-201ENSMUST00000026827 817 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Lire1P11260 Txn1-201ENSMUST00000030051 1051 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Lire1P11260 Tmem219-201ENSMUST00000032926 941 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Lire1P11260 Dpm3-201ENSMUST00000040824 404 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Lire1P11260 Prss38-201ENSMUST00000061481 1243 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Lire1P11260 Olfr1214-201ENSMUST00000099804 936 ntAPPRIS P1 BASIC12.22□□□□□ -0.45
Lire1P11260 Fam214b-202ENSMUST00000107956 3107 ntAPPRIS P1 TSL 5 BASIC12.22□□□□□ -0.45
Lire1P11260 Csrnp3-202ENSMUST00000112394 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
Lire1P11260 C1rb-201ENSMUST00000184647 2429 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Lire1P11260 Susd2-201ENSMUST00000077610 2275 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Lire1P11260 Rtn3-202ENSMUST00000065304 5030 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Lire1P11260 Dcaf8-202ENSMUST00000191689 2754 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Lire1P11260 Pcdhb22-202ENSMUST00000192409 6609 ntAPPRIS P1 BASIC12.22□□□□□ -0.45
Lire1P11260 4930432E11Rik-202ENSMUST00000063585 10871 ntBASIC12.22□□□□□ -0.45
Lire1P11260 Cep295nl-202ENSMUST00000168100 1602 ntAPPRIS P1 BASIC12.22□□□□□ -0.45
Lire1P11260 Gm44271-201ENSMUST00000204525 2600 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Retrieved 100 of 76,532 protein–RNA pairs in 46 ms