Protein–RNA interactions for Protein: Q9R1R2

Trim3, Tripartite motif-containing protein 3, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim3Q9R1R2 Lzts3-202ENSMUST00000089561 4169 ntAPPRIS P3 TSL 5 BASIC12.13□□□□□ -0.47
Trim3Q9R1R2 Hars2-201ENSMUST00000019287 2002 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
Trim3Q9R1R2 Dcun1d3-206ENSMUST00000207233 2917 ntAPPRIS P1 TSL 5 BASIC12.13□□□□□ -0.47
Trim3Q9R1R2 Vrtn-201ENSMUST00000095551 3028 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Trim3Q9R1R2 Gm16793-201ENSMUST00000181322 1680 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
Trim3Q9R1R2 Gm10040-201ENSMUST00000080726 1662 ntBASIC12.13□□□□□ -0.47
Trim3Q9R1R2 Xpo1-201ENSMUST00000020538 5145 ntAPPRIS P1 TSL 5 BASIC12.13□□□□□ -0.47
Trim3Q9R1R2 Ddx46-202ENSMUST00000172272 5676 ntAPPRIS P2 TSL 5 BASIC12.13□□□□□ -0.47
Trim3Q9R1R2 Ddx46-201ENSMUST00000099479 5664 ntAPPRIS ALT2 TSL 5 BASIC12.13□□□□□ -0.47
Trim3Q9R1R2 Tgm1-201ENSMUST00000002389 2791 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Trim3Q9R1R2 Wnt9a-202ENSMUST00000108783 3318 ntAPPRIS P2 TSL 1 (best) BASIC12.13□□□□□ -0.47
Trim3Q9R1R2 Gm26651-201ENSMUST00000181851 2325 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
Trim3Q9R1R2 AC114008.2-201ENSMUST00000227699 1347 ntBASIC12.12□□□□□ -0.47
Trim3Q9R1R2 Gm11725-201ENSMUST00000125607 1850 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
Trim3Q9R1R2 Ctbs-201ENSMUST00000029840 2629 ntAPPRIS P3 TSL 1 (best) BASIC12.12□□□□□ -0.47
Trim3Q9R1R2 Khdrbs2-205ENSMUST00000189878 3259 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
Trim3Q9R1R2 Lctl-201ENSMUST00000034969 2171 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Trim3Q9R1R2 Lrp2bp-202ENSMUST00000110380 1603 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Trim3Q9R1R2 Coasy-202ENSMUST00000107308 2386 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Trim3Q9R1R2 Ccdc22-201ENSMUST00000033483 2353 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Trim3Q9R1R2 Lgals12-203ENSMUST00000159983 2470 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Trim3Q9R1R2 Hvcn1-201ENSMUST00000072602 2790 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Trim3Q9R1R2 Flcn-202ENSMUST00000091246 2768 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Trim3Q9R1R2 Dcun1d3-201ENSMUST00000059851 5985 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Trim3Q9R1R2 Rasgrp2-207ENSMUST00000113475 573 ntTSL 5 BASIC12.12□□□□□ -0.47
Trim3Q9R1R2 Gm12390-201ENSMUST00000117897 397 ntBASIC12.12□□□□□ -0.47
Trim3Q9R1R2 Gm11400-201ENSMUST00000120853 1214 ntBASIC12.12□□□□□ -0.47
Trim3Q9R1R2 Gm21982-201ENSMUST00000146232 3821 ntTSL 2 BASIC12.12□□□□□ -0.47
Trim3Q9R1R2 Plekhd1os-201ENSMUST00000153297 944 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
Trim3Q9R1R2 Gm20652-201ENSMUST00000177314 383 ntTSL 2 BASIC12.12□□□□□ -0.47
Trim3Q9R1R2 Gm27847-201ENSMUST00000183711 107 ntBASIC12.12□□□□□ -0.47
Trim3Q9R1R2 Gm27375-201ENSMUST00000183799 107 ntBASIC12.12□□□□□ -0.47
Trim3Q9R1R2 Cryaa-201ENSMUST00000019192 1176 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
Trim3Q9R1R2 Mrpl30-205ENSMUST00000193673 662 ntAPPRIS P1 TSL 2 BASIC12.12□□□□□ -0.47
Trim3Q9R1R2 Myl10-204ENSMUST00000197186 607 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
Trim3Q9R1R2 Ube2a-205ENSMUST00000201068 1298 ntTSL 5 BASIC12.12□□□□□ -0.47
Trim3Q9R1R2 Gm45505-201ENSMUST00000210252 948 ntTSL 5 BASIC12.12□□□□□ -0.47
Trim3Q9R1R2 Sct-204ENSMUST00000211667 506 ntAPPRIS ALT2 TSL 2 BASIC12.12□□□□□ -0.47
Trim3Q9R1R2 Degs2-201ENSMUST00000021691 1287 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Trim3Q9R1R2 Gm8598-201ENSMUST00000221184 836 ntBASIC12.12□□□□□ -0.47
Trim3Q9R1R2 Mrps22-201ENSMUST00000035034 1197 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Trim3Q9R1R2 Bphl-201ENSMUST00000040656 1253 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Trim3Q9R1R2 Gm13199-201ENSMUST00000071016 747 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Trim3Q9R1R2 Dysf-216ENSMUST00000204987 6474 ntAPPRIS ALT2 TSL 5 BASIC12.12□□□□□ -0.47
Trim3Q9R1R2 Ccdc71-201ENSMUST00000061209 3092 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Trim3Q9R1R2 Prkce-201ENSMUST00000097274 3161 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Trim3Q9R1R2 Limch1-204ENSMUST00000118242 5050 ntAPPRIS ALT2 TSL 5 BASIC12.12□□□□□ -0.47
Trim3Q9R1R2 Ndufaf7-201ENSMUST00000024887 2303 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Trim3Q9R1R2 Aldh6a1-201ENSMUST00000085192 3399 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Trim3Q9R1R2 Prpf40a-206ENSMUST00000209364 2833 ntAPPRIS ALT2 TSL 5 BASIC12.12□□□□□ -0.47
Trim3Q9R1R2 C3-201ENSMUST00000024988 5136 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Trim3Q9R1R2 Cops4-201ENSMUST00000045993 1755 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Trim3Q9R1R2 Glrx3-203ENSMUST00000211496 3440 ntAPPRIS ALT2 TSL 1 (best) BASIC12.12□□□□□ -0.47
Trim3Q9R1R2 Btrc-202ENSMUST00000111936 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Trim3Q9R1R2 Spry2-201ENSMUST00000022709 2087 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Trim3Q9R1R2 Nup88-203ENSMUST00000108531 2453 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
Trim3Q9R1R2 Naaladl1-201ENSMUST00000044451 2491 ntAPPRIS P1 TSL 2 BASIC12.12□□□□□ -0.47
Trim3Q9R1R2 Slc6a6-201ENSMUST00000032185 6186 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Trim3Q9R1R2 Cyth4-201ENSMUST00000043069 2791 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Trim3Q9R1R2 Gpat3-201ENSMUST00000031255 2884 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Trim3Q9R1R2 Gpd2-201ENSMUST00000028167 5620 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Trim3Q9R1R2 Kif1a-210ENSMUST00000190723 6141 ntTSL 5 BASIC12.12□□□□□ -0.47
Trim3Q9R1R2 Rnaseh2a-210ENSMUST00000147812 1532 ntAPPRIS P1 TSL 5 BASIC12.11□□□□□ -0.47
Trim3Q9R1R2 Hmbs-202ENSMUST00000097558 1534 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Trim3Q9R1R2 Aire-216ENSMUST00000156417 1627 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Trim3Q9R1R2 Otx2-201ENSMUST00000118578 2144 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Trim3Q9R1R2 Zfp207-201ENSMUST00000017567 2245 ntAPPRIS ALT1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Trim3Q9R1R2 Usp10-210ENSMUST00000144458 3726 ntAPPRIS P3 TSL 1 (best) BASIC12.11□□□□□ -0.47
Trim3Q9R1R2 Pdp1-203ENSMUST00000108297 4201 ntAPPRIS P3 TSL 1 (best) BASIC12.11□□□□□ -0.47
Trim3Q9R1R2 Sema7a-201ENSMUST00000043059 3297 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Trim3Q9R1R2 Gm42863-201ENSMUST00000197875 2958 ntBASIC12.11□□□□□ -0.47
Trim3Q9R1R2 Proser3-202ENSMUST00000108165 2466 ntAPPRIS P2 TSL 1 (best) BASIC12.11□□□□□ -0.47
Trim3Q9R1R2 Gm26577-201ENSMUST00000180680 2184 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Trim3Q9R1R2 Pced1b-201ENSMUST00000059433 2185 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Trim3Q9R1R2 4933417O13Rik-202ENSMUST00000208893 1571 ntTSL 5 BASIC12.11□□□□□ -0.47
Trim3Q9R1R2 Cntf-201ENSMUST00000112933 1073 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Trim3Q9R1R2 Wisp1-202ENSMUST00000118823 708 ntTSL 5 BASIC12.11□□□□□ -0.47
Trim3Q9R1R2 Tbx3os1-203ENSMUST00000140101 490 ntTSL 3 BASIC12.11□□□□□ -0.47
Trim3Q9R1R2 Grp-202ENSMUST00000173530 617 ntAPPRIS ALT2 TSL 2 BASIC12.11□□□□□ -0.47
Trim3Q9R1R2 Mir7221-201ENSMUST00000184009 72 ntBASIC12.11□□□□□ -0.47
Trim3Q9R1R2 Gm9124-201ENSMUST00000191789 1092 ntBASIC12.11□□□□□ -0.47
Trim3Q9R1R2 Gm9113-201ENSMUST00000192510 1018 ntBASIC12.11□□□□□ -0.47
Trim3Q9R1R2 Lamtor1-202ENSMUST00000193465 661 ntTSL 5 BASIC12.11□□□□□ -0.47
Trim3Q9R1R2 Gm9131-201ENSMUST00000193557 1089 ntBASIC12.11□□□□□ -0.47
Trim3Q9R1R2 Gm9121-201ENSMUST00000193749 1071 ntBASIC12.11□□□□□ -0.47
Trim3Q9R1R2 9430007M09Rik-201ENSMUST00000201947 804 ntBASIC12.11□□□□□ -0.47
Trim3Q9R1R2 Slc35d2-202ENSMUST00000220792 917 ntAPPRIS ALT2 TSL 1 (best) BASIC12.11□□□□□ -0.47
Trim3Q9R1R2 Tex26-201ENSMUST00000031667 1137 ntAPPRIS ALT2 TSL 1 (best) BASIC12.11□□□□□ -0.47
Trim3Q9R1R2 Myo18a-220ENSMUST00000164334 5381 ntAPPRIS ALT2 TSL 5 BASIC12.11□□□□□ -0.47
Trim3Q9R1R2 Spock1-206ENSMUST00000189373 3128 ntTSL 5 BASIC12.11□□□□□ -0.47
Trim3Q9R1R2 Daglb-201ENSMUST00000045593 4651 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Trim3Q9R1R2 9130019O22Rik-202ENSMUST00000164345 2735 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Trim3Q9R1R2 Gpd1l-202ENSMUST00000129305 2543 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Trim3Q9R1R2 Atxn7l1os2-201ENSMUST00000138617 2019 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Trim3Q9R1R2 Gm13814-201ENSMUST00000141341 3077 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Trim3Q9R1R2 Elf1-201ENSMUST00000040131 4235 ntAPPRIS P2 TSL 1 (best) BASIC12.11□□□□□ -0.47
Trim3Q9R1R2 Fam171a1-201ENSMUST00000062934 4129 ntAPPRIS ALT2 TSL 1 (best) BASIC12.11□□□□□ -0.47
Trim3Q9R1R2 Gm19434-201ENSMUST00000204330 2573 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Trim3Q9R1R2 Dnajb4-204ENSMUST00000144950 2459 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Trim3Q9R1R2 Ctgf-203ENSMUST00000176228 2490 ntTSL 2 BASIC12.11□□□□□ -0.47
Retrieved 100 of 76,532 protein–RNA pairs in 39.4 ms