Protein–RNA interactions for Protein: Q9JIS3

Smco4, Single-pass membrane and coiled-coil domain-containing protein 4, mousemouse

Predictions only

Length 59 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smco4Q9JIS3 Gabra1-201ENSMUST00000020707 4688 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
Smco4Q9JIS3 Lztr1-201ENSMUST00000023444 3112 ntAPPRIS P2 TSL 1 (best) BASIC10.24□□□□□ -0.77
Smco4Q9JIS3 Jak3-202ENSMUST00000110012 3774 ntAPPRIS P1 TSL 5 BASIC10.24□□□□□ -0.77
Smco4Q9JIS3 Bpnt1-201ENSMUST00000027916 2200 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
Smco4Q9JIS3 Wbp2-202ENSMUST00000106444 1012 ntTSL 2 BASIC10.24□□□□□ -0.77
Smco4Q9JIS3 Hoxa7-202ENSMUST00000134367 807 ntTSL 5 BASIC10.24□□□□□ -0.77
Smco4Q9JIS3 Gm11455-201ENSMUST00000149285 733 ntTSL 1 (best) BASIC10.24□□□□□ -0.77
Smco4Q9JIS3 Coa3-201ENSMUST00000017332 886 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
Smco4Q9JIS3 Gm28051-201ENSMUST00000179306 445 ntAPPRIS P1 TSL 2 BASIC10.24□□□□□ -0.77
Smco4Q9JIS3 Gm26769-201ENSMUST00000180469 619 ntTSL 3 BASIC10.24□□□□□ -0.77
Smco4Q9JIS3 1700095B10Rik-201ENSMUST00000182349 978 ntTSL 1 (best) BASIC10.24□□□□□ -0.77
Smco4Q9JIS3 Gm18934-201ENSMUST00000216671 1044 ntBASIC10.24□□□□□ -0.77
Smco4Q9JIS3 Zfyve21-206ENSMUST00000222843 705 ntTSL 3 BASIC10.24□□□□□ -0.77
Smco4Q9JIS3 AC159301.1-201ENSMUST00000225130 1182 ntBASIC10.24□□□□□ -0.77
Smco4Q9JIS3 AC126408.1-201ENSMUST00000225184 523 ntBASIC10.24□□□□□ -0.77
Smco4Q9JIS3 AC138604.1-201ENSMUST00000226969 739 ntBASIC10.24□□□□□ -0.77
Smco4Q9JIS3 4921530L21Rik-202ENSMUST00000228913 1115 ntAPPRIS P1 BASIC10.24□□□□□ -0.77
Smco4Q9JIS3 4921530L21Rik-201ENSMUST00000045892 1161 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
Smco4Q9JIS3 Ndufs8-201ENSMUST00000075092 963 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
Smco4Q9JIS3 S100a16-202ENSMUST00000098911 1127 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
Smco4Q9JIS3 Dgkz-203ENSMUST00000111303 4169 ntTSL 1 (best) BASIC10.24□□□□□ -0.77
Smco4Q9JIS3 Apol7a-203ENSMUST00000175919 2263 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
Smco4Q9JIS3 Gm26608-201ENSMUST00000180740 1954 ntTSL 1 (best) BASIC10.24□□□□□ -0.77
Smco4Q9JIS3 Gm13294-201ENSMUST00000121757 1330 ntBASIC10.24□□□□□ -0.77
Smco4Q9JIS3 Psmb10-201ENSMUST00000034369 1311 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
Smco4Q9JIS3 Adm-201ENSMUST00000033054 1390 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
Smco4Q9JIS3 Fsd1-201ENSMUST00000011733 1748 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
Smco4Q9JIS3 Tubd1-201ENSMUST00000020821 2070 ntTSL 1 (best) BASIC10.24□□□□□ -0.77
Smco4Q9JIS3 Rad54l-202ENSMUST00000102705 2780 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
Smco4Q9JIS3 Cdc7-204ENSMUST00000118261 3129 ntAPPRIS P3 TSL 1 (best) BASIC10.24□□□□□ -0.77
Smco4Q9JIS3 Odf2-209ENSMUST00000113764 2450 ntAPPRIS P3 TSL 5 BASIC10.24□□□□□ -0.77
Smco4Q9JIS3 Smndc1-201ENSMUST00000025997 2125 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
Smco4Q9JIS3 Tk1-201ENSMUST00000026661 1440 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
Smco4Q9JIS3 Psmc4-201ENSMUST00000032824 1440 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
Smco4Q9JIS3 Hoxa9-201ENSMUST00000048680 3226 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
Smco4Q9JIS3 Ehmt1-203ENSMUST00000102938 4680 ntAPPRIS ALT2 TSL 1 (best) BASIC10.24□□□□□ -0.77
Smco4Q9JIS3 Gper1-201ENSMUST00000066211 2537 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
Smco4Q9JIS3 Gm15941-205ENSMUST00000140044 1825 ntTSL 1 (best) BASIC10.23□□□□□ -0.77
Smco4Q9JIS3 Alg13-202ENSMUST00000070801 1802 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
Smco4Q9JIS3 Git2-202ENSMUST00000086564 2984 ntAPPRIS P1 TSL 5 BASIC10.23□□□□□ -0.77
Smco4Q9JIS3 Pdp1-205ENSMUST00000108301 2635 ntTSL 1 (best) BASIC10.23□□□□□ -0.77
Smco4Q9JIS3 Dtx3l-202ENSMUST00000114885 2648 ntTSL 1 (best) BASIC10.23□□□□□ -0.77
Smco4Q9JIS3 4933417C20Rik-201ENSMUST00000193962 1874 ntBASIC10.23□□□□□ -0.77
Smco4Q9JIS3 Gp2-202ENSMUST00000207887 1853 ntAPPRIS ALT2 TSL 1 (best) BASIC10.23□□□□□ -0.77
Smco4Q9JIS3 Pimreg-201ENSMUST00000021164 1513 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
Smco4Q9JIS3 Chmp5-201ENSMUST00000030128 1519 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
Smco4Q9JIS3 Nol6-201ENSMUST00000030138 4599 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
Smco4Q9JIS3 Gtf2ird2-201ENSMUST00000016086 3482 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
Smco4Q9JIS3 Ttc30b-201ENSMUST00000099996 2737 ntAPPRIS P1 BASIC10.23□□□□□ -0.77
Smco4Q9JIS3 Gm26642-201ENSMUST00000180981 2782 ntTSL 1 (best) BASIC10.23□□□□□ -0.77
Smco4Q9JIS3 Nf1-202ENSMUST00000108251 9217 ntAPPRIS ALT2 TSL 5 BASIC10.23□□□□□ -0.77
Smco4Q9JIS3 AC154517.2-201ENSMUST00000220829 2458 ntBASIC10.23□□□□□ -0.77
Smco4Q9JIS3 Hap1-202ENSMUST00000138603 3316 ntAPPRIS ALT2 TSL 5 BASIC10.23□□□□□ -0.77
Smco4Q9JIS3 Brd3-201ENSMUST00000028282 5419 ntAPPRIS P3 TSL 5 BASIC10.23□□□□□ -0.77
Smco4Q9JIS3 Myt1l-201ENSMUST00000021009 5027 ntAPPRIS ALT2 TSL 1 (best) BASIC10.23□□□□□ -0.77
Smco4Q9JIS3 Sptan1-204ENSMUST00000113717 7958 ntTSL 1 (best) BASIC10.23□□□□□ -0.77
Smco4Q9JIS3 Tpm2-203ENSMUST00000107914 1164 ntAPPRIS ALT1 TSL 1 (best) BASIC10.23□□□□□ -0.77
Smco4Q9JIS3 B9d2-201ENSMUST00000108403 1021 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
Smco4Q9JIS3 Ascl2-202ENSMUST00000121862 814 ntAPPRIS ALT2 BASIC10.23□□□□□ -0.77
Smco4Q9JIS3 Pld6-202ENSMUST00000125307 948 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
Smco4Q9JIS3 Alkal1-201ENSMUST00000133144 971 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
Smco4Q9JIS3 5033428I22Rik-203ENSMUST00000210614 952 ntTSL 1 (best) BASIC10.23□□□□□ -0.77
Smco4Q9JIS3 1700022H01Rik-201ENSMUST00000219142 387 ntTSL 1 (best) BASIC10.23□□□□□ -0.77
Smco4Q9JIS3 Pdcd6-201ENSMUST00000022060 1131 ntAPPRIS P2 TSL 1 (best) BASIC10.23□□□□□ -0.77
Smco4Q9JIS3 Atp23-201ENSMUST00000026504 903 ntTSL 1 (best) BASIC10.23□□□□□ -0.77
Smco4Q9JIS3 Gpr142-201ENSMUST00000045319 1098 ntAPPRIS P3 TSL 1 (best) BASIC10.23□□□□□ -0.77
Smco4Q9JIS3 Wdr70-201ENSMUST00000045766 2126 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
Smco4Q9JIS3 Gfra4-202ENSMUST00000066958 783 ntAPPRIS ALT2 TSL 1 (best) BASIC10.23□□□□□ -0.77
Smco4Q9JIS3 2310039H08Rik-201ENSMUST00000071430 773 ntAPPRIS P1 BASIC10.23□□□□□ -0.77
Smco4Q9JIS3 AC159195.3-201ENSMUST00000225162 2211 ntBASIC10.23□□□□□ -0.77
Smco4Q9JIS3 Wdr20rt-201ENSMUST00000046331 2228 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
Smco4Q9JIS3 Gm29455-201ENSMUST00000186504 2659 ntTSL 1 (best) BASIC10.23□□□□□ -0.77
Smco4Q9JIS3 Stat5a-203ENSMUST00000107357 3605 ntTSL 1 (best) BASIC10.23□□□□□ -0.77
Smco4Q9JIS3 Slc25a42-202ENSMUST00000110127 3196 ntAPPRIS P1 TSL 5 BASIC10.23□□□□□ -0.77
Smco4Q9JIS3 9230105E05Rik-201ENSMUST00000161291 2250 ntTSL 1 (best) BASIC10.23□□□□□ -0.77
Smco4Q9JIS3 Arfgap1-214ENSMUST00000185115 1393 ntAPPRIS ALT2 TSL 5 BASIC10.23□□□□□ -0.77
Smco4Q9JIS3 Snupn-201ENSMUST00000068856 1391 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
Smco4Q9JIS3 Otub2-202ENSMUST00000101094 3228 ntTSL 1 (best) BASIC10.23□□□□□ -0.77
Smco4Q9JIS3 Pde6b-201ENSMUST00000031456 2799 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
Smco4Q9JIS3 Tgfbr1-202ENSMUST00000044234 2861 ntAPPRIS ALT2 TSL 1 (best) BASIC10.23□□□□□ -0.77
Smco4Q9JIS3 Lsp1-211ENSMUST00000149521 1910 ntTSL 1 (best) BASIC10.23□□□□□ -0.77
Smco4Q9JIS3 Trak1-201ENSMUST00000045903 4827 ntAPPRIS P2 TSL 1 (best) BASIC10.23□□□□□ -0.77
Smco4Q9JIS3 Rab3d-203ENSMUST00000122211 3886 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
Smco4Q9JIS3 Golga2-202ENSMUST00000100194 4373 ntAPPRIS P4 TSL 1 (best) BASIC10.23□□□□□ -0.77
Smco4Q9JIS3 Prg4-207ENSMUST00000162367 1480 ntTSL 1 (best) BASIC10.23□□□□□ -0.77
Smco4Q9JIS3 Fancc-217ENSMUST00000163091 2995 ntAPPRIS ALT2 TSL 5 BASIC10.23□□□□□ -0.77
Smco4Q9JIS3 Inpp4a-206ENSMUST00000132615 3038 ntTSL 5 BASIC10.23□□□□□ -0.77
Smco4Q9JIS3 Alox12-201ENSMUST00000000329 3001 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
Smco4Q9JIS3 Prkcd-202ENSMUST00000112202 2005 ntTSL 1 (best) BASIC10.23□□□□□ -0.77
Smco4Q9JIS3 Trmt61b-202ENSMUST00000137830 2572 ntTSL 1 (best) BASIC10.22□□□□□ -0.77
Smco4Q9JIS3 Sema4c-208ENSMUST00000195620 3640 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
Smco4Q9JIS3 Dclk1-204ENSMUST00000196745 7962 ntAPPRIS ALT2 TSL 1 (best) BASIC10.22□□□□□ -0.77
Smco4Q9JIS3 Nek1-208ENSMUST00000211256 4810 ntAPPRIS ALT2 TSL 1 (best) BASIC10.22□□□□□ -0.77
Smco4Q9JIS3 Slc35g3-201ENSMUST00000102586 1618 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
Smco4Q9JIS3 Gm26778-201ENSMUST00000181443 3805 ntTSL 5 BASIC10.22□□□□□ -0.77
Smco4Q9JIS3 Zcchc8-204ENSMUST00000196282 4350 ntAPPRIS P1 TSL 5 BASIC10.22□□□□□ -0.77
Smco4Q9JIS3 Gm38055-201ENSMUST00000195353 2217 ntBASIC10.22□□□□□ -0.77
Smco4Q9JIS3 Mcm8-202ENSMUST00000066559 3397 ntAPPRIS P3 TSL 1 (best) BASIC10.22□□□□□ -0.77
Smco4Q9JIS3 Hvcn1-202ENSMUST00000100747 2805 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
Smco4Q9JIS3 Rnf214-208ENSMUST00000161187 2847 ntAPPRIS ALT2 TSL 1 (best) BASIC10.22□□□□□ -0.77
Retrieved 100 of 76,532 protein–RNA pairs in 32.7 ms