Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Brd4-201ENSMUST00000003726 5955 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.21
Upf3bQ3ULL6 Gm25857-201ENSMUST00000082788 129 ntBASIC13.77□□□□□ -0.21
Upf3bQ3ULL6 Dmrtc1c2-201ENSMUST00000087896 1255 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.21
Upf3bQ3ULL6 Prkce-201ENSMUST00000097274 3161 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
Upf3bQ3ULL6 Pcdhb18-201ENSMUST00000055949 5041 ntAPPRIS P1 BASIC13.77□□□□□ -0.21
Upf3bQ3ULL6 Stk25-201ENSMUST00000027498 4249 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
Upf3bQ3ULL6 Cap2-201ENSMUST00000021802 3713 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
Upf3bQ3ULL6 Rims1-205ENSMUST00000097811 6446 ntAPPRIS P5 TSL 5 BASIC13.77□□□□□ -0.21
Upf3bQ3ULL6 Gm43666-201ENSMUST00000197116 2989 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
Upf3bQ3ULL6 Zc3h4-202ENSMUST00000209289 5853 ntAPPRIS ALT2 TSL 5 BASIC13.77□□□□□ -0.21
Upf3bQ3ULL6 Arhgef2-219ENSMUST00000176500 4492 ntAPPRIS ALT2 TSL 5 BASIC13.76□□□□□ -0.21
Upf3bQ3ULL6 D6Ertd527e-203ENSMUST00000203747 2216 ntAPPRIS ALT2 TSL 5 BASIC13.76□□□□□ -0.21
Upf3bQ3ULL6 Bach2-202ENSMUST00000108180 8882 ntAPPRIS P2 TSL 5 BASIC13.76□□□□□ -0.21
Upf3bQ3ULL6 Vmn1r198-202ENSMUST00000226786 6195 ntAPPRIS P2 BASIC13.76□□□□□ -0.21
Upf3bQ3ULL6 Sfpq-201ENSMUST00000030623 3465 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Upf3bQ3ULL6 Hmox2-201ENSMUST00000004172 1730 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Upf3bQ3ULL6 Syt2-204ENSMUST00000188842 3386 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Upf3bQ3ULL6 Smpd2-201ENSMUST00000019965 1602 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Upf3bQ3ULL6 Nmral1-202ENSMUST00000079130 1459 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
Upf3bQ3ULL6 Vash2-201ENSMUST00000047409 4032 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Upf3bQ3ULL6 Ins2-204ENSMUST00000105932 455 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Upf3bQ3ULL6 Leng8-202ENSMUST00000117274 874 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
Upf3bQ3ULL6 Gm12363-201ENSMUST00000122250 668 ntBASIC13.76□□□□□ -0.21
Upf3bQ3ULL6 4930579D09Rik-201ENSMUST00000132321 469 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
Upf3bQ3ULL6 AC153506.3-201ENSMUST00000219287 1029 ntTSL 5 BASIC13.76□□□□□ -0.21
Upf3bQ3ULL6 Ins2-201ENSMUST00000000220 478 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Upf3bQ3ULL6 Mien1-201ENSMUST00000002655 747 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Upf3bQ3ULL6 Ccdc113-201ENSMUST00000041569 1288 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Upf3bQ3ULL6 Ifi27-202ENSMUST00000076702 828 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
Upf3bQ3ULL6 Stard8-201ENSMUST00000036606 4963 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Upf3bQ3ULL6 Tbc1d16-201ENSMUST00000036113 6986 ntAPPRIS P3 TSL 1 (best) BASIC13.76□□□□□ -0.21
Upf3bQ3ULL6 Tars2-202ENSMUST00000074339 2313 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
Upf3bQ3ULL6 Olfr322-202ENSMUST00000213232 4632 ntAPPRIS P1 TSL 5 BASIC13.76□□□□□ -0.21
Upf3bQ3ULL6 Dnajb5-203ENSMUST00000098112 3093 ntAPPRIS P2 TSL 1 (best) BASIC13.76□□□□□ -0.21
Upf3bQ3ULL6 Gas7-201ENSMUST00000041611 2968 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
Upf3bQ3ULL6 Gal3st4-203ENSMUST00000161647 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
Upf3bQ3ULL6 Pcdhgc3-201ENSMUST00000076807 4687 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Upf3bQ3ULL6 Ankfn1-201ENSMUST00000050983 2665 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
Upf3bQ3ULL6 Sacs-202ENSMUST00000119509 3468 ntAPPRIS ALT2 TSL 5 BASIC13.76□□□□□ -0.21
Upf3bQ3ULL6 Smpd4-206ENSMUST00000163997 1722 ntTSL 5 BASIC13.76□□□□□ -0.21
Upf3bQ3ULL6 Ptn-202ENSMUST00000201321 2558 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
Upf3bQ3ULL6 Gm38157-201ENSMUST00000194178 1698 ntBASIC13.75□□□□□ -0.21
Upf3bQ3ULL6 Gm36500-201ENSMUST00000221821 1626 ntTSL 5 BASIC13.75□□□□□ -0.21
Upf3bQ3ULL6 1700128E19Rik-201ENSMUST00000134409 2439 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
Upf3bQ3ULL6 Taf1c-201ENSMUST00000093099 3236 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Upf3bQ3ULL6 Sema4a-213ENSMUST00000165898 3125 ntAPPRIS P1 TSL 5 BASIC13.75□□□□□ -0.21
Upf3bQ3ULL6 Zbtb7b-201ENSMUST00000029677 3851 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Upf3bQ3ULL6 Gm15897-201ENSMUST00000117770 1486 ntBASIC13.75□□□□□ -0.21
Upf3bQ3ULL6 Klc2-202ENSMUST00000113727 2874 ntTSL 5 BASIC13.75□□□□□ -0.21
Upf3bQ3ULL6 Ifnlr1-201ENSMUST00000074408 4182 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Upf3bQ3ULL6 Plekha2-204ENSMUST00000128715 3463 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Upf3bQ3ULL6 Hnrnpdl-202ENSMUST00000128187 2752 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Upf3bQ3ULL6 Olfr649-202ENSMUST00000106859 1382 ntAPPRIS P1 TSL 3 BASIC13.75□□□□□ -0.21
Upf3bQ3ULL6 1810030O07Rik-201ENSMUST00000060108 2699 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Upf3bQ3ULL6 Mirg-202ENSMUST00000181543 1300 ntTSL 5 BASIC13.75□□□□□ -0.21
Upf3bQ3ULL6 Gm5620-201ENSMUST00000077991 1348 ntBASIC13.75□□□□□ -0.21
Upf3bQ3ULL6 Naga-201ENSMUST00000023088 1913 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Upf3bQ3ULL6 Gm26819-201ENSMUST00000180656 5128 ntTSL 5 BASIC13.75□□□□□ -0.21
Upf3bQ3ULL6 Gm14127-201ENSMUST00000117906 678 ntBASIC13.75□□□□□ -0.21
Upf3bQ3ULL6 Ccdc169-203ENSMUST00000118963 740 ntTSL 3 BASIC13.75□□□□□ -0.21
Upf3bQ3ULL6 Rdh18-ps-201ENSMUST00000137395 944 ntBASIC13.75□□□□□ -0.21
Upf3bQ3ULL6 Rdh18-ps-202ENSMUST00000143917 953 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
Upf3bQ3ULL6 Gm16315-201ENSMUST00000163009 783 ntTSL 3 BASIC13.75□□□□□ -0.21
Upf3bQ3ULL6 Psme1-202ENSMUST00000172738 681 ntTSL 5 BASIC13.75□□□□□ -0.21
Upf3bQ3ULL6 Gm22121-201ENSMUST00000175148 54 ntBASIC13.75□□□□□ -0.21
Upf3bQ3ULL6 1700015O11Rik-201ENSMUST00000180964 678 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
Upf3bQ3ULL6 Ssr2-202ENSMUST00000192495 620 ntTSL 5 BASIC13.75□□□□□ -0.21
Upf3bQ3ULL6 Gm18062-201ENSMUST00000208020 547 ntBASIC13.75□□□□□ -0.21
Upf3bQ3ULL6 Gm18055-201ENSMUST00000208254 547 ntBASIC13.75□□□□□ -0.21
Upf3bQ3ULL6 Otos-201ENSMUST00000053144 704 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Upf3bQ3ULL6 Tmem86b-201ENSMUST00000055085 1222 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Upf3bQ3ULL6 Ccdc169-202ENSMUST00000061099 887 ntAPPRIS P1 TSL 5 BASIC13.75□□□□□ -0.21
Upf3bQ3ULL6 Cebpe-201ENSMUST00000064290 1241 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Upf3bQ3ULL6 Tmem256-201ENSMUST00000094065 492 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Upf3bQ3ULL6 C1qtnf1-202ENSMUST00000106286 2512 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Upf3bQ3ULL6 C1qtnf1-201ENSMUST00000017590 2532 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Upf3bQ3ULL6 Mtmr2-201ENSMUST00000034396 3788 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Upf3bQ3ULL6 Plch2-206ENSMUST00000135665 4349 ntAPPRIS ALT2 TSL 5 BASIC13.75□□□□□ -0.21
Upf3bQ3ULL6 Elp4-202ENSMUST00000122965 3048 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Upf3bQ3ULL6 Ntrk2-204ENSMUST00000224259 3049 ntBASIC13.75□□□□□ -0.21
Upf3bQ3ULL6 Cacna1b-203ENSMUST00000100348 7182 ntAPPRIS ALT2 TSL 5 BASIC13.75□□□□□ -0.21
Upf3bQ3ULL6 Gcom1-201ENSMUST00000163998 1726 ntAPPRIS P5 TSL 5 BASIC13.75□□□□□ -0.21
Upf3bQ3ULL6 Ube2a-201ENSMUST00000016452 1732 ntAPPRIS P3 TSL 1 (best) BASIC13.75□□□□□ -0.21
Upf3bQ3ULL6 Tcf4-230ENSMUST00000201205 2270 ntTSL 5 BASIC13.75□□□□□ -0.21
Upf3bQ3ULL6 Dnajc14-207ENSMUST00000219508 2298 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Upf3bQ3ULL6 Lzts1-204ENSMUST00000185176 5019 ntAPPRIS P1 TSL 5 BASIC13.75□□□□□ -0.21
Upf3bQ3ULL6 Erg-201ENSMUST00000077773 2232 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
Upf3bQ3ULL6 Pcdhgb8-202ENSMUST00000208907 2796 ntAPPRIS P2 TSL 1 (best) BASIC13.75□□□□□ -0.21
Upf3bQ3ULL6 Lrpprc-201ENSMUST00000112308 4393 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Upf3bQ3ULL6 Zbtb7b-203ENSMUST00000107433 3650 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Upf3bQ3ULL6 Tekt4-201ENSMUST00000025002 1532 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Upf3bQ3ULL6 Rnf224-201ENSMUST00000091318 2021 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Upf3bQ3ULL6 Gm42863-201ENSMUST00000197875 2958 ntBASIC13.74□□□□□ -0.21
Upf3bQ3ULL6 Nup205-204ENSMUST00000201374 6411 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.21
Upf3bQ3ULL6 Rnft2-202ENSMUST00000121369 4431 ntAPPRIS ALT1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Upf3bQ3ULL6 Gm13288-201ENSMUST00000094977 2850 ntAPPRIS P1 BASIC13.74□□□□□ -0.21
Upf3bQ3ULL6 Ptgr2-208ENSMUST00000147363 1869 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
Upf3bQ3ULL6 Sppl2a-201ENSMUST00000028844 5616 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Upf3bQ3ULL6 Aacs-201ENSMUST00000031445 3239 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Upf3bQ3ULL6 Ccdc25-201ENSMUST00000022614 2230 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Retrieved 100 of 76,532 protein–RNA pairs in 40.6 ms