Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Elmsan1-201ENSMUST00000046266 6848 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Col28a1Q2UY11 Coro2b-201ENSMUST00000048043 3610 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Col28a1Q2UY11 Hspa9-201ENSMUST00000025217 3049 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Col28a1Q2UY11 Acin1-208ENSMUST00000126166 2369 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Col28a1Q2UY11 Cyp27b1-201ENSMUST00000165764 2380 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Col28a1Q2UY11 Nt5c2-202ENSMUST00000168536 3769 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Col28a1Q2UY11 Trpv4-204ENSMUST00000112222 2475 ntTSL 5 BASIC12.51□□□□□ -0.41
Col28a1Q2UY11 Gata3-201ENSMUST00000102976 3215 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Col28a1Q2UY11 Gprc5c-208ENSMUST00000177952 1809 ntAPPRIS P3 TSL 1 (best) BASIC12.51□□□□□ -0.41
Col28a1Q2UY11 Slc35e2-202ENSMUST00000105608 6291 ntAPPRIS P1 TSL 5 BASIC12.51□□□□□ -0.41
Col28a1Q2UY11 Kif5a-201ENSMUST00000099172 6295 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Col28a1Q2UY11 Trmt1l-201ENSMUST00000065625 2749 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Col28a1Q2UY11 Ccdc85a-202ENSMUST00000093253 5431 ntAPPRIS P3 TSL 1 (best) BASIC12.51□□□□□ -0.41
Col28a1Q2UY11 Nxf1-202ENSMUST00000010248 748 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Col28a1Q2UY11 Cd99l2-204ENSMUST00000114587 973 ntAPPRIS ALT2 TSL 3 BASIC12.51□□□□□ -0.41
Col28a1Q2UY11 Gm12960-201ENSMUST00000120017 1066 ntBASIC12.51□□□□□ -0.41
Col28a1Q2UY11 Tex22-203ENSMUST00000146107 1130 ntAPPRIS P1 TSL 2 BASIC12.51□□□□□ -0.41
Col28a1Q2UY11 Fam219aos-201ENSMUST00000151164 708 ntTSL 2 BASIC12.51□□□□□ -0.41
Col28a1Q2UY11 Pax5-213ENSMUST00000173821 996 ntTSL 5 BASIC12.51□□□□□ -0.41
Col28a1Q2UY11 Smyd3-207ENSMUST00000194237 1047 ntTSL 2 BASIC12.51□□□□□ -0.41
Col28a1Q2UY11 Abhd18-205ENSMUST00000203472 588 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Col28a1Q2UY11 Rpsa-ps10-201ENSMUST00000057740 885 ntBASIC12.51□□□□□ -0.41
Col28a1Q2UY11 Capn5-202ENSMUST00000107112 2232 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Col28a1Q2UY11 Kcnt1-201ENSMUST00000037580 5881 ntAPPRIS P3 TSL 1 (best) BASIC12.51□□□□□ -0.41
Col28a1Q2UY11 Gck-203ENSMUST00000109823 2361 ntTSL 5 BASIC12.51□□□□□ -0.41
Col28a1Q2UY11 Shisa9-201ENSMUST00000023138 4326 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
Col28a1Q2UY11 Rhobtb1-205ENSMUST00000164034 2421 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Col28a1Q2UY11 Zbtb1-201ENSMUST00000042779 12190 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Col28a1Q2UY11 Nrsn2-201ENSMUST00000079278 1455 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Col28a1Q2UY11 Zfp41-201ENSMUST00000054555 3736 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Col28a1Q2UY11 Tubgcp3-201ENSMUST00000000776 3797 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Col28a1Q2UY11 Oit3-201ENSMUST00000009798 2717 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Col28a1Q2UY11 Shroom1-202ENSMUST00000093114 2886 ntTSL 2 BASIC12.51□□□□□ -0.41
Col28a1Q2UY11 Nupl1-206ENSMUST00000225111 2936 ntBASIC12.51□□□□□ -0.41
Col28a1Q2UY11 Rspo2-203ENSMUST00000226810 3091 ntAPPRIS P1 BASIC12.51□□□□□ -0.41
Col28a1Q2UY11 Sufu-204ENSMUST00000120778 1850 ntTSL 2 BASIC12.51□□□□□ -0.41
Col28a1Q2UY11 Sox7-201ENSMUST00000079652 3299 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Col28a1Q2UY11 Pianp-207ENSMUST00000162170 2053 ntAPPRIS P2 TSL 1 (best) BASIC12.5□□□□□ -0.41
Col28a1Q2UY11 Cerk-203ENSMUST00000156546 2162 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Col28a1Q2UY11 Alpi-201ENSMUST00000113270 2337 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Col28a1Q2UY11 Nrf1-209ENSMUST00000115209 2406 ntTSL 5 BASIC12.5□□□□□ -0.41
Col28a1Q2UY11 Madd-212ENSMUST00000111375 5706 ntAPPRIS ALT2 TSL 5 BASIC12.5□□□□□ -0.41
Col28a1Q2UY11 Acly-203ENSMUST00000107389 4426 ntAPPRIS ALT1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Col28a1Q2UY11 Poc1b-201ENSMUST00000020113 2862 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Col28a1Q2UY11 Fbf1-201ENSMUST00000103031 5252 ntAPPRIS P1 TSL 5 BASIC12.5□□□□□ -0.41
Col28a1Q2UY11 Ccdc88c-201ENSMUST00000068411 7542 ntAPPRIS P2 TSL 1 (best) BASIC12.5□□□□□ -0.41
Col28a1Q2UY11 Trip13-201ENSMUST00000022053 3399 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Col28a1Q2UY11 Plpbp-201ENSMUST00000033875 3603 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Col28a1Q2UY11 Ldha-ps-201ENSMUST00000119390 995 ntBASIC12.5□□□□□ -0.41
Col28a1Q2UY11 Commd6-203ENSMUST00000168587 519 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
Col28a1Q2UY11 Spag7-201ENSMUST00000018431 1159 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Col28a1Q2UY11 Gm19220-201ENSMUST00000222682 803 ntBASIC12.5□□□□□ -0.41
Col28a1Q2UY11 Mettl26-201ENSMUST00000026827 817 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Col28a1Q2UY11 Eapp-201ENSMUST00000067272 590 ntTSL 3 BASIC12.5□□□□□ -0.41
Col28a1Q2UY11 Gm29374-201ENSMUST00000187198 1340 ntTSL 3 BASIC12.5□□□□□ -0.41
Col28a1Q2UY11 Wdr45-223ENSMUST00000207675 1335 ntTSL 5 BASIC12.5□□□□□ -0.41
Col28a1Q2UY11 Ptp4a1-201ENSMUST00000027232 4145 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Col28a1Q2UY11 Irf6-201ENSMUST00000076521 4113 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Col28a1Q2UY11 Tmem181a-201ENSMUST00000088940 4405 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Col28a1Q2UY11 Ate1-204ENSMUST00000178534 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
Col28a1Q2UY11 Camk2b-206ENSMUST00000101585 1650 ntTSL 5 BASIC12.5□□□□□ -0.41
Col28a1Q2UY11 Nox3-201ENSMUST00000115800 1792 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Col28a1Q2UY11 Hoxd10-201ENSMUST00000061745 1816 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Col28a1Q2UY11 4933439K11Rik-203ENSMUST00000169111 1869 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Col28a1Q2UY11 Tmem237-202ENSMUST00000094917 1869 ntAPPRIS P4 TSL 1 (best) BASIC12.5□□□□□ -0.41
Col28a1Q2UY11 Cyth2-208ENSMUST00000211783 1983 ntTSL 5 BASIC12.5□□□□□ -0.41
Col28a1Q2UY11 Fn1-211ENSMUST00000187938 7965 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
Col28a1Q2UY11 Gm14123-201ENSMUST00000156345 2658 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Col28a1Q2UY11 Spata33-202ENSMUST00000212161 2941 ntTSL 2 BASIC12.5□□□□□ -0.41
Col28a1Q2UY11 Pik3r1-201ENSMUST00000035532 2923 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Col28a1Q2UY11 Tmem230-203ENSMUST00000110164 2957 ntAPPRIS P1 TSL 2 BASIC12.5□□□□□ -0.41
Col28a1Q2UY11 Rbfox2-202ENSMUST00000111581 3072 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Col28a1Q2UY11 E130308A19Rik-201ENSMUST00000052420 3205 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Col28a1Q2UY11 Ptpru-201ENSMUST00000030741 4416 ntAPPRIS P1 TSL 5 BASIC12.5□□□□□ -0.41
Col28a1Q2UY11 Nckap5l-201ENSMUST00000023747 4853 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Col28a1Q2UY11 Prpf40a-206ENSMUST00000209364 2833 ntAPPRIS ALT2 TSL 5 BASIC12.49□□□□□ -0.41
Col28a1Q2UY11 Dgkg-201ENSMUST00000023578 2725 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
Col28a1Q2UY11 Sncaip-209ENSMUST00000179625 2568 ntTSL 5 BASIC12.49□□□□□ -0.41
Col28a1Q2UY11 Smarcd2-203ENSMUST00000106843 2548 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Col28a1Q2UY11 Abra-201ENSMUST00000054742 1762 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Col28a1Q2UY11 Gjb5-201ENSMUST00000046498 1721 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Col28a1Q2UY11 Gm38037-201ENSMUST00000192600 1624 ntBASIC12.49□□□□□ -0.41
Col28a1Q2UY11 Epha5-202ENSMUST00000113398 4830 ntTSL 5 BASIC12.49□□□□□ -0.41
Col28a1Q2UY11 Setdb1-201ENSMUST00000015841 4658 ntAPPRIS P3 TSL 1 (best) BASIC12.49□□□□□ -0.41
Col28a1Q2UY11 Car6-202ENSMUST00000105683 1460 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Col28a1Q2UY11 Tekt2-201ENSMUST00000030658 1492 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Col28a1Q2UY11 Fggy-203ENSMUST00000107091 1395 ntTSL 5 BASIC12.49□□□□□ -0.41
Col28a1Q2UY11 Mecr-201ENSMUST00000030742 1337 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Col28a1Q2UY11 Rpsa-ps9-201ENSMUST00000120702 885 ntBASIC12.49□□□□□ -0.41
Col28a1Q2UY11 Gm14730-201ENSMUST00000122378 1045 ntBASIC12.49□□□□□ -0.41
Col28a1Q2UY11 Mir1938-201ENSMUST00000158746 100 ntBASIC12.49□□□□□ -0.41
Col28a1Q2UY11 Flg-208ENSMUST00000180308 1076 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Col28a1Q2UY11 Myl10-204ENSMUST00000197186 607 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Col28a1Q2UY11 Gm43630-201ENSMUST00000201550 776 ntBASIC12.49□□□□□ -0.41
Col28a1Q2UY11 Gm42846-201ENSMUST00000201771 514 ntTSL 3 BASIC12.49□□□□□ -0.41
Col28a1Q2UY11 Gm7498-201ENSMUST00000203282 1084 ntBASIC12.49□□□□□ -0.41
Col28a1Q2UY11 Blvra-201ENSMUST00000002064 1160 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Col28a1Q2UY11 Gm10244-201ENSMUST00000090237 830 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Col28a1Q2UY11 Slc7a6-201ENSMUST00000034378 3750 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Col28a1Q2UY11 Rab31-201ENSMUST00000070673 3476 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Retrieved 100 of 76,532 protein–RNA pairs in 31.3 ms