Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 Myh2-203ENSMUST00000170159 6083 ntAPPRIS P1 TSL 5 BASIC11.11□□□□□ -0.63
Nkx3-1P97436 Ankmy2-201ENSMUST00000041640 2456 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Nkx3-1P97436 Trappc9-203ENSMUST00000168191 3127 ntAPPRIS ALT2 TSL 1 (best) BASIC11.11□□□□□ -0.63
Nkx3-1P97436 Opa1-201ENSMUST00000038867 3230 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
Nkx3-1P97436 Them4-201ENSMUST00000049822 1781 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Nkx3-1P97436 Chd7-201ENSMUST00000039267 9444 ntAPPRIS P1 TSL 5 BASIC11.11□□□□□ -0.63
Nkx3-1P97436 Ap2a1-203ENSMUST00000166972 3449 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Nkx3-1P97436 Gm4366-201ENSMUST00000201488 1342 ntBASIC11.1□□□□□ -0.63
Nkx3-1P97436 Dnpep-209ENSMUST00000187836 1862 ntAPPRIS P3 TSL 1 (best) BASIC11.1□□□□□ -0.63
Nkx3-1P97436 Gpr137b-202ENSMUST00000220628 3634 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
Nkx3-1P97436 Ccdc71-201ENSMUST00000061209 3092 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Nkx3-1P97436 AC121805.2-201ENSMUST00000218808 2538 ntBASIC11.1□□□□□ -0.63
Nkx3-1P97436 4933431M02Rik-201ENSMUST00000203905 1432 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
Nkx3-1P97436 Esm1-201ENSMUST00000038144 2097 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Nkx3-1P97436 Dnm1-203ENSMUST00000113350 3258 ntAPPRIS ALT1 TSL 5 BASIC11.1□□□□□ -0.63
Nkx3-1P97436 Il12rb1-205ENSMUST00000212657 2741 ntAPPRIS ALT2 TSL 5 BASIC11.1□□□□□ -0.63
Nkx3-1P97436 Stx17-201ENSMUST00000064765 1531 ntAPPRIS P1 TSL 5 BASIC11.1□□□□□ -0.63
Nkx3-1P97436 Leo1-201ENSMUST00000048937 2180 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Nkx3-1P97436 Stxbp2-207ENSMUST00000160708 2908 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Nkx3-1P97436 Hnrnpf-203ENSMUST00000167182 2271 ntAPPRIS P1 TSL 3 BASIC11.1□□□□□ -0.63
Nkx3-1P97436 AC167669.2-201ENSMUST00000224417 1620 ntBASIC11.1□□□□□ -0.63
Nkx3-1P97436 Ebag9-201ENSMUST00000022964 1613 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Nkx3-1P97436 Pigg-202ENSMUST00000118910 3030 ntTSL 5 BASIC11.1□□□□□ -0.63
Nkx3-1P97436 Wapl-205ENSMUST00000169910 4066 ntAPPRIS P3 TSL 1 (best) BASIC11.1□□□□□ -0.63
Nkx3-1P97436 Tal1-203ENSMUST00000161601 3703 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Nkx3-1P97436 Kcnma1-214ENSMUST00000190044 3747 ntAPPRIS ALT2 TSL 1 (best) BASIC11.1□□□□□ -0.63
Nkx3-1P97436 Gm2606-201ENSMUST00000100754 1002 ntBASIC11.1□□□□□ -0.63
Nkx3-1P97436 Gcdh-202ENSMUST00000109745 2114 ntAPPRIS ALT2 TSL 5 BASIC11.1□□□□□ -0.63
Nkx3-1P97436 Gm14966-202ENSMUST00000129675 649 ntTSL 2 BASIC11.1□□□□□ -0.63
Nkx3-1P97436 F630206G17Rik-201ENSMUST00000137002 685 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
Nkx3-1P97436 Gm15395-201ENSMUST00000153724 702 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
Nkx3-1P97436 Zc3h18-201ENSMUST00000017622 3810 ntAPPRIS P4 TSL 1 (best) BASIC11.1□□□□□ -0.63
Nkx3-1P97436 Gm26636-201ENSMUST00000181696 1115 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
Nkx3-1P97436 1700034G24Rik-202ENSMUST00000183186 1081 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
Nkx3-1P97436 Gm28411-201ENSMUST00000189864 341 ntTSL 3 BASIC11.1□□□□□ -0.63
Nkx3-1P97436 Gm2420-203ENSMUST00000202748 447 ntTSL 5 BASIC11.1□□□□□ -0.63
Nkx3-1P97436 Gm44992-206ENSMUST00000209313 1261 ntTSL 5 BASIC11.1□□□□□ -0.63
Nkx3-1P97436 Gm7293-201ENSMUST00000216682 1007 ntBASIC11.1□□□□□ -0.63
Nkx3-1P97436 AC155637.1-201ENSMUST00000218560 636 ntBASIC11.1□□□□□ -0.63
Nkx3-1P97436 AC167229.2-201ENSMUST00000218902 675 ntTSL 5 BASIC11.1□□□□□ -0.63
Nkx3-1P97436 Trex2-201ENSMUST00000033738 1017 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Nkx3-1P97436 BC049730-201ENSMUST00000051714 1172 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Nkx3-1P97436 Rsbn1-201ENSMUST00000051139 4762 ntAPPRIS P2 TSL 1 (best) BASIC11.1□□□□□ -0.63
Nkx3-1P97436 Otop2-202ENSMUST00000106544 2220 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Nkx3-1P97436 Grk4-201ENSMUST00000001112 2408 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Nkx3-1P97436 Crx-203ENSMUST00000172758 1469 ntTSL 3 BASIC11.1□□□□□ -0.63
Nkx3-1P97436 Lamc3-201ENSMUST00000028187 5871 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Nkx3-1P97436 Gpr45-203ENSMUST00000179766 3776 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Nkx3-1P97436 Dlgap3-201ENSMUST00000046659 3884 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Nkx3-1P97436 Cpne4-201ENSMUST00000057742 3959 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Nkx3-1P97436 Gm5466-201ENSMUST00000119395 1890 ntBASIC11.1□□□□□ -0.63
Nkx3-1P97436 4933417C20Rik-201ENSMUST00000193962 1874 ntBASIC11.1□□□□□ -0.63
Nkx3-1P97436 Diaph3-202ENSMUST00000168889 4582 ntAPPRIS P2 TSL 1 (best) BASIC11.1□□□□□ -0.63
Nkx3-1P97436 Diaph3-201ENSMUST00000022599 4582 ntAPPRIS ALT2 TSL 5 BASIC11.1□□□□□ -0.63
Nkx3-1P97436 Coq4-201ENSMUST00000028137 1991 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Nkx3-1P97436 Ero1lb-202ENSMUST00000220811 3341 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
Nkx3-1P97436 Kyat1-204ENSMUST00000113661 2057 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Nkx3-1P97436 Snx10-201ENSMUST00000049152 2480 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Nkx3-1P97436 Yeats2-201ENSMUST00000090052 5997 ntAPPRIS P3 TSL 1 (best) BASIC11.1□□□□□ -0.63
Nkx3-1P97436 Ankrd34a-201ENSMUST00000058943 2583 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Nkx3-1P97436 Syngap1-201ENSMUST00000081285 4315 ntAPPRIS ALT2 TSL 5 BASIC11.1□□□□□ -0.63
Nkx3-1P97436 Gtf3c5-202ENSMUST00000113889 2667 ntAPPRIS ALT2 TSL 1 (best) BASIC11.1□□□□□ -0.63
Nkx3-1P97436 Sema6d-206ENSMUST00000103239 6225 ntAPPRIS P4 TSL 5 BASIC11.1□□□□□ -0.63
Nkx3-1P97436 Lin54-208ENSMUST00000149714 3869 ntTSL 5 BASIC11.1□□□□□ -0.63
Nkx3-1P97436 Akt1-205ENSMUST00000128300 1342 ntTSL 5 BASIC11.09□□□□□ -0.63
Nkx3-1P97436 Pgpep1-201ENSMUST00000070173 4883 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Nkx3-1P97436 Fam198a-204ENSMUST00000215990 2149 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Nkx3-1P97436 Plxnb2-201ENSMUST00000060808 6394 ntAPPRIS P1 TSL 5 BASIC11.09□□□□□ -0.63
Nkx3-1P97436 A530083I20Rik-201ENSMUST00000180486 2421 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
Nkx3-1P97436 Lrrc56-202ENSMUST00000070458 2502 ntAPPRIS P3 TSL 1 (best) BASIC11.09□□□□□ -0.63
Nkx3-1P97436 Qsox1-202ENSMUST00000111764 2722 ntAPPRIS ALT2 TSL 1 (best) BASIC11.09□□□□□ -0.63
Nkx3-1P97436 Dcun1d3-206ENSMUST00000207233 2917 ntAPPRIS P1 TSL 5 BASIC11.09□□□□□ -0.63
Nkx3-1P97436 Cblb-204ENSMUST00000227062 3728 ntAPPRIS P2 BASIC11.09□□□□□ -0.63
Nkx3-1P97436 Ccdc88c-201ENSMUST00000068411 7542 ntAPPRIS P2 TSL 1 (best) BASIC11.09□□□□□ -0.63
Nkx3-1P97436 Clic6-201ENSMUST00000023670 3758 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Nkx3-1P97436 Flt3-201ENSMUST00000049324 3657 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Nkx3-1P97436 Zfp672-204ENSMUST00000108829 3094 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Nkx3-1P97436 Hspb7-201ENSMUST00000102486 2769 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Nkx3-1P97436 1700037C18Rik-202ENSMUST00000115859 2592 ntAPPRIS P2 TSL 1 (best) BASIC11.09□□□□□ -0.63
Nkx3-1P97436 5330426L24Rik-201ENSMUST00000200008 2175 ntBASIC11.09□□□□□ -0.63
Nkx3-1P97436 Cplx4-201ENSMUST00000025397 1751 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Nkx3-1P97436 Fam118b-202ENSMUST00000063782 1662 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
Nkx3-1P97436 Rtl6-201ENSMUST00000069476 4426 ntAPPRIS P1 BASIC11.09□□□□□ -0.63
Nkx3-1P97436 Rpl15-203ENSMUST00000100799 802 ntAPPRIS P1 TSL 2 BASIC11.09□□□□□ -0.63
Nkx3-1P97436 6030468B19Rik-201ENSMUST00000106331 1071 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Nkx3-1P97436 Mogat1-202ENSMUST00000113524 1228 ntAPPRIS P1 TSL 5 BASIC11.09□□□□□ -0.63
Nkx3-1P97436 Clic3-202ENSMUST00000114265 808 ntAPPRIS P2 TSL 1 (best) BASIC11.09□□□□□ -0.63
Nkx3-1P97436 Gm13492-201ENSMUST00000119772 665 ntBASIC11.09□□□□□ -0.63
Nkx3-1P97436 Gm14017-201ENSMUST00000121934 386 ntBASIC11.09□□□□□ -0.63
Nkx3-1P97436 1500011K16Rik-201ENSMUST00000135091 800 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Nkx3-1P97436 Gm15829-201ENSMUST00000145415 869 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
Nkx3-1P97436 Egfl7-209ENSMUST00000150404 892 ntAPPRIS P4 TSL 5 BASIC11.09□□□□□ -0.63
Nkx3-1P97436 Gm16555-201ENSMUST00000159971 1199 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
Nkx3-1P97436 Igdcc4-203ENSMUST00000166273 778 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
Nkx3-1P97436 Gm23363-201ENSMUST00000175024 79 ntBASIC11.09□□□□□ -0.63
Nkx3-1P97436 Fundc1-204ENSMUST00000176638 448 ntTSL 3 BASIC11.09□□□□□ -0.63
Nkx3-1P97436 Gm16505-201ENSMUST00000179981 232 ntBASIC11.09□□□□□ -0.63
Nkx3-1P97436 Gm17586-201ENSMUST00000181502 908 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
Nkx3-1P97436 Gm5597-201ENSMUST00000182353 1193 ntBASIC11.09□□□□□ -0.63
Nkx3-1P97436 Bloc1s2-ps-201ENSMUST00000183232 432 ntBASIC11.09□□□□□ -0.63
Retrieved 100 of 76,532 protein–RNA pairs in 45 ms