Protein–RNA interactions for Protein: P02463

Col4a1, Collagen alpha-1(IV) chain, mousemouse

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col4a1P02463 Gm12627-201ENSMUST00000178412 382 ntBASIC15.48■□□□□ 0.07
Col4a1P02463 Gm12625-201ENSMUST00000179122 382 ntBASIC15.48■□□□□ 0.07
Col4a1P02463 Gm12614-201ENSMUST00000179586 382 ntBASIC15.48■□□□□ 0.07
Col4a1P02463 Gm12613-201ENSMUST00000180323 382 ntBASIC15.48■□□□□ 0.07
Col4a1P02463 Gm37246-201ENSMUST00000192665 835 ntBASIC15.48■□□□□ 0.07
Col4a1P02463 4930589O11Rik-201ENSMUST00000200768 920 ntBASIC15.48■□□□□ 0.07
Col4a1P02463 Lysmd4-208ENSMUST00000208698 551 ntAPPRIS ALT2 TSL 2 BASIC15.48■□□□□ 0.07
Col4a1P02463 Gm45285-201ENSMUST00000210418 749 ntTSL 3 BASIC15.48■□□□□ 0.07
Col4a1P02463 Gm270-201ENSMUST00000223010 976 ntBASIC15.48■□□□□ 0.07
Col4a1P02463 Ngdn-201ENSMUST00000022815 1200 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Col4a1P02463 Cdyl-202ENSMUST00000163595 3575 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Col4a1P02463 Sort1-201ENSMUST00000102632 6796 ntAPPRIS P3 TSL 1 (best) BASIC15.47■□□□□ 0.07
Col4a1P02463 Zic1-201ENSMUST00000034927 5606 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Col4a1P02463 Tesmin-203ENSMUST00000142193 2279 ntAPPRIS ALT2 TSL 1 (best) BASIC15.47■□□□□ 0.07
Col4a1P02463 Taf6-203ENSMUST00000110937 2093 ntTSL 5 BASIC15.47■□□□□ 0.07
Col4a1P02463 Tmc4-202ENSMUST00000121743 2204 ntAPPRIS ALT2 TSL 1 (best) BASIC15.47■□□□□ 0.07
Col4a1P02463 Nectin4-202ENSMUST00000094325 3245 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
Col4a1P02463 Abcg5-201ENSMUST00000066175 2351 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Col4a1P02463 Dcaf4-201ENSMUST00000021645 2008 ntAPPRIS P2 TSL 5 BASIC15.47■□□□□ 0.07
Col4a1P02463 Phyhd1-212ENSMUST00000154647 1678 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Col4a1P02463 Cyp2a12-201ENSMUST00000075552 1681 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Col4a1P02463 Pex3-201ENSMUST00000019945 2129 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Col4a1P02463 Stox2-208ENSMUST00000211737 4573 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
Col4a1P02463 Micu1-204ENSMUST00000165563 2442 ntAPPRIS P3 TSL 1 (best) BASIC15.47■□□□□ 0.07
Col4a1P02463 A730062M13Rik-201ENSMUST00000192843 1910 ntBASIC15.47■□□□□ 0.07
Col4a1P02463 Gm9550-201ENSMUST00000161130 862 ntBASIC15.47■□□□□ 0.07
Col4a1P02463 Gm19459-201ENSMUST00000176240 835 ntBASIC15.47■□□□□ 0.07
Col4a1P02463 Smim22-207ENSMUST00000184439 382 ntAPPRIS P3 TSL 2 BASIC15.47■□□□□ 0.07
Col4a1P02463 AC125486.1-201ENSMUST00000218701 320 ntBASIC15.47■□□□□ 0.07
Col4a1P02463 Gm4797-201ENSMUST00000219075 1283 ntBASIC15.47■□□□□ 0.07
Col4a1P02463 Defb36-201ENSMUST00000058086 468 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Col4a1P02463 Gm9785-201ENSMUST00000062642 1006 ntBASIC15.47■□□□□ 0.07
Col4a1P02463 Zbtb11-201ENSMUST00000050248 4920 ntAPPRIS P1 TSL 5 BASIC15.47■□□□□ 0.07
Col4a1P02463 Styxl1-201ENSMUST00000053906 1582 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Col4a1P02463 Oxct1-205ENSMUST00000138927 1743 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
Col4a1P02463 Frmd5-207ENSMUST00000138157 4230 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
Col4a1P02463 Atp6v1h-201ENSMUST00000044369 2049 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Col4a1P02463 Rnf168-203ENSMUST00000171474 4460 ntAPPRIS P2 TSL 1 (best) BASIC15.47■□□□□ 0.07
Col4a1P02463 Uchl1os-201ENSMUST00000152002 1685 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
Col4a1P02463 Kifc3-202ENSMUST00000169353 2898 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.07
Col4a1P02463 Gdpd5-201ENSMUST00000037528 4611 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Col4a1P02463 Spata21-201ENSMUST00000051907 2526 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Col4a1P02463 Ackr4-202ENSMUST00000076147 2389 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Col4a1P02463 5930412G12Rik-203ENSMUST00000134673 2087 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
Col4a1P02463 Ptgdr2-201ENSMUST00000037261 2644 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Col4a1P02463 Rcbtb1-202ENSMUST00000043227 3903 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Col4a1P02463 Etv1-211ENSMUST00000162563 1865 ntAPPRIS P1 TSL 5 BASIC15.46■□□□□ 0.07
Col4a1P02463 Tcn2-201ENSMUST00000020710 1897 ntAPPRIS P1 TSL 5 BASIC15.46■□□□□ 0.07
Col4a1P02463 Gm33543-203ENSMUST00000211096 1722 ntAPPRIS P5 TSL 5 BASIC15.46■□□□□ 0.07
Col4a1P02463 Sgpl1-202ENSMUST00000122259 4102 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Col4a1P02463 Tmprss11d-202ENSMUST00000122377 2256 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
Col4a1P02463 Tnnt3-206ENSMUST00000105944 753 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.07
Col4a1P02463 Tnnt3-210ENSMUST00000105948 753 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.07
Col4a1P02463 Tnnt3-212ENSMUST00000105950 1037 ntAPPRIS ALT2 TSL 5 BASIC15.46■□□□□ 0.07
Col4a1P02463 Rps9-204ENSMUST00000108625 914 ntAPPRIS P1 TSL 2 BASIC15.46■□□□□ 0.07
Col4a1P02463 Gm13461-201ENSMUST00000120980 662 ntBASIC15.46■□□□□ 0.07
Col4a1P02463 Gm15891-201ENSMUST00000127307 611 ntTSL 5 BASIC15.46■□□□□ 0.07
Col4a1P02463 Ccdc127-205ENSMUST00000162672 677 ntTSL 3 BASIC15.46■□□□□ 0.07
Col4a1P02463 Tnnt3-224ENSMUST00000169299 1013 ntAPPRIS ALT2 TSL 5 BASIC15.46■□□□□ 0.07
Col4a1P02463 Tnnt3-226ENSMUST00000180152 1067 ntAPPRIS ALT2 TSL 5 BASIC15.46■□□□□ 0.07
Col4a1P02463 9030616G12Rik-201ENSMUST00000181142 644 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
Col4a1P02463 Mir7686-201ENSMUST00000200604 57 ntBASIC15.46■□□□□ 0.07
Col4a1P02463 Gng8-204ENSMUST00000205716 432 ntAPPRIS P1 TSL 3 BASIC15.46■□□□□ 0.07
Col4a1P02463 Gm44545-201ENSMUST00000208262 746 ntBASIC15.46■□□□□ 0.07
Col4a1P02463 Rbp2-201ENSMUST00000035029 672 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Col4a1P02463 Mrpl41-201ENSMUST00000045604 776 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Col4a1P02463 Apc-201ENSMUST00000066133 1185 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
Col4a1P02463 Gm26035-201ENSMUST00000083065 308 ntBASIC15.46■□□□□ 0.07
Col4a1P02463 Cd320-202ENSMUST00000087559 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.07
Col4a1P02463 Csrnp3-202ENSMUST00000112394 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.07
Col4a1P02463 Xpo6-201ENSMUST00000009344 4455 ntAPPRIS P3 TSL 1 (best) BASIC15.46■□□□□ 0.07
Col4a1P02463 Lmntd1-201ENSMUST00000111706 2350 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.07
Col4a1P02463 Pacs1-201ENSMUST00000025786 4339 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Col4a1P02463 Ppp1r12b-209ENSMUST00000168381 3621 ntAPPRIS P2 TSL 1 (best) BASIC15.46■□□□□ 0.07
Col4a1P02463 Pphln1-204ENSMUST00000165935 3473 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Col4a1P02463 C1qtnf9-201ENSMUST00000025940 1903 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Col4a1P02463 Ror2-201ENSMUST00000021918 3985 ntAPPRIS P2 TSL 1 (best) BASIC15.46■□□□□ 0.07
Col4a1P02463 Crtc3-201ENSMUST00000122255 5115 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.06
Col4a1P02463 Dhx58-201ENSMUST00000017974 2412 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.06
Col4a1P02463 Ebp-201ENSMUST00000033509 1743 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.06
Col4a1P02463 Sema3b-205ENSMUST00000102532 3191 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.06
Col4a1P02463 Fam71a-201ENSMUST00000171798 2234 ntAPPRIS P1 BASIC15.45■□□□□ 0.06
Col4a1P02463 Il12rb1-201ENSMUST00000000808 2873 ntAPPRIS P2 TSL 1 (best) BASIC15.45■□□□□ 0.06
Col4a1P02463 Synpo-201ENSMUST00000097566 5060 ntAPPRIS P3 TSL 1 (best) BASIC15.45■□□□□ 0.06
Col4a1P02463 Serpina11-201ENSMUST00000074693 1447 ntAPPRIS P3 TSL 1 (best) BASIC15.45■□□□□ 0.06
Col4a1P02463 E130308A19Rik-201ENSMUST00000052420 3205 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
Col4a1P02463 Yap1-202ENSMUST00000086580 4115 ntAPPRIS P3 TSL 1 (best) BASIC15.45■□□□□ 0.06
Col4a1P02463 Borcs7-201ENSMUST00000074912 2176 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
Col4a1P02463 Sass6-205ENSMUST00000198311 2404 ntAPPRIS P2 TSL 1 (best) BASIC15.45■□□□□ 0.06
Col4a1P02463 Gm11941-201ENSMUST00000119904 610 ntBASIC15.45■□□□□ 0.06
Col4a1P02463 Krtap20-2-201ENSMUST00000169954 528 ntAPPRIS P1 BASIC15.45■□□□□ 0.06
Col4a1P02463 Gm17391-201ENSMUST00000171036 126 ntBASIC15.45■□□□□ 0.06
Col4a1P02463 Lgals4-207ENSMUST00000208971 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC15.45■□□□□ 0.06
Col4a1P02463 AC101677.2-201ENSMUST00000218733 741 ntTSL 3 BASIC15.45■□□□□ 0.06
Col4a1P02463 Mrpl30-201ENSMUST00000027256 969 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
Col4a1P02463 Cthrc1-201ENSMUST00000067072 1166 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
Col4a1P02463 Gm11938-201ENSMUST00000072306 663 ntAPPRIS P1 BASIC15.45■□□□□ 0.06
Col4a1P02463 AC163354.1-205ENSMUST00000223262 1511 ntTSL 5 BASIC15.45■□□□□ 0.06
Col4a1P02463 Erg-206ENSMUST00000122199 2007 ntAPPRIS ALT1 TSL 1 (best) BASIC15.45■□□□□ 0.06
Col4a1P02463 Rabep2-201ENSMUST00000106405 2279 ntAPPRIS ALT2 TSL 1 (best) BASIC15.45■□□□□ 0.06
Retrieved 100 of 76,532 protein–RNA pairs in 43.2 ms