Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Epha5-206ENSMUST00000113406 4606 ntAPPRIS ALT2 TSL 5 BASIC10.62□□□□□ -0.71
Hmgb3O54879 Cplx1-201ENSMUST00000046892 2189 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
Hmgb3O54879 Fancc-214ENSMUST00000161977 3111 ntAPPRIS P3 TSL 1 (best) BASIC10.62□□□□□ -0.71
Hmgb3O54879 Ccng2-202ENSMUST00000121127 2570 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
Hmgb3O54879 Hpcal4-202ENSMUST00000106246 1627 ntAPPRIS P1 TSL 5 BASIC10.62□□□□□ -0.71
Hmgb3O54879 Sh3pxd2a-201ENSMUST00000081619 10464 ntAPPRIS P3 TSL 1 (best) BASIC10.62□□□□□ -0.71
Hmgb3O54879 Nkd2-201ENSMUST00000022051 4016 ntAPPRIS P3 TSL 1 (best) BASIC10.62□□□□□ -0.71
Hmgb3O54879 Ccdc30-202ENSMUST00000063642 2534 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
Hmgb3O54879 Zfp366-201ENSMUST00000056558 6382 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
Hmgb3O54879 Ccnh-204ENSMUST00000164127 1718 ntTSL 1 (best) BASIC10.61□□□□□ -0.71
Hmgb3O54879 Synj2-202ENSMUST00000080283 4793 ntAPPRIS ALT2 TSL 1 (best) BASIC10.61□□□□□ -0.71
Hmgb3O54879 Gpr101-201ENSMUST00000057645 5410 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
Hmgb3O54879 Opcml-201ENSMUST00000073822 2378 ntAPPRIS P1 TSL 5 BASIC10.61□□□□□ -0.71
Hmgb3O54879 Cenpl-202ENSMUST00000111618 1996 ntAPPRIS P1 TSL 5 BASIC10.61□□□□□ -0.71
Hmgb3O54879 Vamp1-203ENSMUST00000100942 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC10.61□□□□□ -0.71
Hmgb3O54879 Gm9946-202ENSMUST00000162741 1580 ntTSL 1 (best) BASIC10.61□□□□□ -0.71
Hmgb3O54879 Nup50-201ENSMUST00000165443 4741 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
Hmgb3O54879 Ppargc1b-202ENSMUST00000075299 3656 ntAPPRIS P2 TSL 1 (best) BASIC10.61□□□□□ -0.71
Hmgb3O54879 Gm44758-201ENSMUST00000206096 2068 ntBASIC10.61□□□□□ -0.71
Hmgb3O54879 Srrm4-201ENSMUST00000076124 7472 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
Hmgb3O54879 Gm13722-201ENSMUST00000117964 3066 ntBASIC10.61□□□□□ -0.71
Hmgb3O54879 Ccdc71-201ENSMUST00000061209 3092 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
Hmgb3O54879 Atxn10-201ENSMUST00000163242 2425 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
Hmgb3O54879 Rhobtb1-205ENSMUST00000164034 2421 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
Hmgb3O54879 Rab1a-202ENSMUST00000109601 1200 ntTSL 5 BASIC10.61□□□□□ -0.71
Hmgb3O54879 Orai3-202ENSMUST00000118865 768 ntTSL 3 BASIC10.61□□□□□ -0.71
Hmgb3O54879 Gm12428-201ENSMUST00000119844 727 ntBASIC10.61□□□□□ -0.71
Hmgb3O54879 1810032O08Rik-206ENSMUST00000144049 966 ntAPPRIS P5 TSL 2 BASIC10.61□□□□□ -0.71
Hmgb3O54879 Gm18889-201ENSMUST00000174284 929 ntBASIC10.61□□□□□ -0.71
Hmgb3O54879 Gm26830-201ENSMUST00000180389 993 ntTSL 1 (best) BASIC10.61□□□□□ -0.71
Hmgb3O54879 Gm6283-201ENSMUST00000182369 1000 ntBASIC10.61□□□□□ -0.71
Hmgb3O54879 Gm29541-201ENSMUST00000191351 678 ntBASIC10.61□□□□□ -0.71
Hmgb3O54879 AC153872.1-201ENSMUST00000199539 128 ntBASIC10.61□□□□□ -0.71
Hmgb3O54879 AC154621.1-201ENSMUST00000226155 1119 ntBASIC10.61□□□□□ -0.71
Hmgb3O54879 Mzt1-203ENSMUST00000227948 952 ntBASIC10.61□□□□□ -0.71
Hmgb3O54879 Trem2-201ENSMUST00000024791 1088 ntAPPRIS P3 TSL 1 (best) BASIC10.61□□□□□ -0.71
Hmgb3O54879 Tamm41-201ENSMUST00000032461 1168 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
Hmgb3O54879 Chrnd-201ENSMUST00000073252 2925 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
Hmgb3O54879 Oraov1-201ENSMUST00000033388 2015 ntAPPRIS P3 TSL 1 (best) BASIC10.61□□□□□ -0.71
Hmgb3O54879 Atp6v1h-201ENSMUST00000044369 2049 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
Hmgb3O54879 Myo18a-224ENSMUST00000172303 6339 ntAPPRIS ALT2 TSL 1 (best) BASIC10.61□□□□□ -0.71
Hmgb3O54879 Tcf4-230ENSMUST00000201205 2270 ntTSL 5 BASIC10.61□□□□□ -0.71
Hmgb3O54879 Sgcb-201ENSMUST00000081170 3786 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
Hmgb3O54879 Olfr981-202ENSMUST00000215956 8197 ntAPPRIS P1 TSL 5 BASIC10.61□□□□□ -0.71
Hmgb3O54879 Cxcl10-202ENSMUST00000118006 1353 ntTSL 1 (best) BASIC10.61□□□□□ -0.71
Hmgb3O54879 Gm13332-201ENSMUST00000120451 1398 ntBASIC10.61□□□□□ -0.71
Hmgb3O54879 Trpc2-201ENSMUST00000124189 2874 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
Hmgb3O54879 Acin1-208ENSMUST00000126166 2369 ntTSL 1 (best) BASIC10.61□□□□□ -0.71
Hmgb3O54879 Tm9sf2-201ENSMUST00000026624 3107 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
Hmgb3O54879 Mob1a-201ENSMUST00000038658 4119 ntTSL 1 (best) BASIC10.61□□□□□ -0.71
Hmgb3O54879 Slc29a1-204ENSMUST00000163492 2216 ntAPPRIS P3 TSL 1 (best) BASIC10.61□□□□□ -0.71
Hmgb3O54879 Nup98-201ENSMUST00000070165 4052 ntTSL 1 (best) BASIC10.61□□□□□ -0.71
Hmgb3O54879 Cdk7-201ENSMUST00000091299 1988 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
Hmgb3O54879 Bcl2l1-202ENSMUST00000109820 2568 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
Hmgb3O54879 Trpm1-219ENSMUST00000206314 2323 ntTSL 1 (best) BASIC10.61□□□□□ -0.71
Hmgb3O54879 Tfe3-204ENSMUST00000115677 2943 ntTSL 1 (best) BASIC10.61□□□□□ -0.71
Hmgb3O54879 Dcun1d3-206ENSMUST00000207233 2917 ntAPPRIS P1 TSL 5 BASIC10.61□□□□□ -0.71
Hmgb3O54879 Axl-202ENSMUST00000085948 3899 ntAPPRIS ALT2 TSL 1 (best) BASIC10.6□□□□□ -0.71
Hmgb3O54879 Gm17276-201ENSMUST00000180839 2782 ntTSL 1 (best) BASIC10.6□□□□□ -0.71
Hmgb3O54879 Tiam2-201ENSMUST00000072156 6127 ntAPPRIS P1 TSL 1 (best) BASIC10.6□□□□□ -0.71
Hmgb3O54879 Pitpnm2-204ENSMUST00000159677 1690 ntTSL 5 BASIC10.6□□□□□ -0.71
Hmgb3O54879 Rnf225-201ENSMUST00000045870 3239 ntAPPRIS P1 TSL 1 (best) BASIC10.6□□□□□ -0.71
Hmgb3O54879 Pdp1-205ENSMUST00000108301 2635 ntTSL 1 (best) BASIC10.6□□□□□ -0.71
Hmgb3O54879 Cog3-203ENSMUST00000227473 4197 ntBASIC10.6□□□□□ -0.71
Hmgb3O54879 Gm13859-201ENSMUST00000119936 1423 ntBASIC10.6□□□□□ -0.71
Hmgb3O54879 Mrc2-201ENSMUST00000021038 3335 ntTSL 1 (best) BASIC10.6□□□□□ -0.71
Hmgb3O54879 Gm5422-201ENSMUST00000050717 2721 ntBASIC10.6□□□□□ -0.71
Hmgb3O54879 Gm14866-201ENSMUST00000149206 2118 ntTSL 2 BASIC10.6□□□□□ -0.71
Hmgb3O54879 Rbm6-201ENSMUST00000035201 3999 ntAPPRIS P3 TSL 1 (best) BASIC10.6□□□□□ -0.71
Hmgb3O54879 Cmtm6-201ENSMUST00000035007 3383 ntAPPRIS P1 TSL 1 (best) BASIC10.6□□□□□ -0.71
Hmgb3O54879 Fnip1-201ENSMUST00000046835 6255 ntAPPRIS P1 TSL 1 (best) BASIC10.6□□□□□ -0.71
Hmgb3O54879 Gm15082-201ENSMUST00000147045 1960 ntTSL 1 (best) BASIC10.6□□□□□ -0.71
Hmgb3O54879 Myo5a-201ENSMUST00000123128 11702 ntTSL 5 BASIC10.6□□□□□ -0.71
Hmgb3O54879 Gm24543-201ENSMUST00000103867 82 ntBASIC10.6□□□□□ -0.71
Hmgb3O54879 Dhdds-202ENSMUST00000105885 998 ntTSL 5 BASIC10.6□□□□□ -0.71
Hmgb3O54879 Nnat-202ENSMUST00000109526 1213 ntAPPRIS P4 TSL 1 (best) BASIC10.6□□□□□ -0.71
Hmgb3O54879 Gm6912-201ENSMUST00000117218 544 ntBASIC10.6□□□□□ -0.71
Hmgb3O54879 Rpl39l-202ENSMUST00000121292 550 ntAPPRIS P1 TSL 2 BASIC10.6□□□□□ -0.71
Hmgb3O54879 Kctd14-202ENSMUST00000121987 1210 ntTSL 1 (best) BASIC10.6□□□□□ -0.71
Hmgb3O54879 Gm20878-206ENSMUST00000153997 903 ntAPPRIS P2 TSL 2 BASIC10.6□□□□□ -0.71
Hmgb3O54879 Mpped1-210ENSMUST00000172115 795 ntTSL 3 BASIC10.6□□□□□ -0.71
Hmgb3O54879 Mpped1-211ENSMUST00000172398 795 ntTSL 3 BASIC10.6□□□□□ -0.71
Hmgb3O54879 Gm11214-201ENSMUST00000184252 552 ntAPPRIS P1 BASIC10.6□□□□□ -0.71
Hmgb3O54879 Arfgap1-213ENSMUST00000184394 1209 ntAPPRIS ALT2 TSL 5 BASIC10.6□□□□□ -0.71
Hmgb3O54879 Ilkap-208ENSMUST00000187306 377 ntTSL 5 BASIC10.6□□□□□ -0.71
Hmgb3O54879 Gm36972-201ENSMUST00000194000 676 ntTSL 3 BASIC10.6□□□□□ -0.71
Hmgb3O54879 Cdipt-205ENSMUST00000206450 951 ntTSL 5 BASIC10.6□□□□□ -0.71
Hmgb3O54879 Fuz-206ENSMUST00000207485 1140 ntAPPRIS ALT1 TSL 5 BASIC10.6□□□□□ -0.71
Hmgb3O54879 AC131710.1-201ENSMUST00000228336 990 ntBASIC10.6□□□□□ -0.71
Hmgb3O54879 Mcrip1-201ENSMUST00000034913 1205 ntAPPRIS P1 TSL 1 (best) BASIC10.6□□□□□ -0.71
Hmgb3O54879 Gm5771-201ENSMUST00000049079 798 ntAPPRIS P1 TSL 1 (best) BASIC10.6□□□□□ -0.71
Hmgb3O54879 Prr23a2-201ENSMUST00000071302 881 ntAPPRIS P1 BASIC10.6□□□□□ -0.71
Hmgb3O54879 Pianp-207ENSMUST00000162170 2053 ntAPPRIS P2 TSL 1 (best) BASIC10.6□□□□□ -0.71
Hmgb3O54879 Nrap-202ENSMUST00000073536 5501 ntAPPRIS P4 TSL 1 (best) BASIC10.6□□□□□ -0.71
Hmgb3O54879 Pcdhgb4-202ENSMUST00000195363 4665 ntAPPRIS P1 TSL 1 (best) BASIC10.6□□□□□ -0.71
Hmgb3O54879 Lpar5-203ENSMUST00000171989 1458 ntAPPRIS P1 TSL 2 BASIC10.6□□□□□ -0.71
Hmgb3O54879 Acot7-202ENSMUST00000075363 1457 ntAPPRIS ALT2 TSL 1 (best) BASIC10.6□□□□□ -0.71
Hmgb3O54879 Myo18a-222ENSMUST00000168348 6582 ntAPPRIS ALT2 TSL 1 (best) BASIC10.6□□□□□ -0.71
Hmgb3O54879 Zmynd15-201ENSMUST00000039093 2804 ntAPPRIS P2 TSL 1 (best) BASIC10.6□□□□□ -0.71
Hmgb3O54879 Clpb-211ENSMUST00000209579 4159 ntAPPRIS ALT2 TSL 1 (best) BASIC10.6□□□□□ -0.71
Retrieved 100 of 76,532 protein–RNA pairs in 115.8 ms