Protein–RNA interactions for Protein: Q61124

Cln3, Battenin, mousemouse

Predictions only

Length 438 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cln3Q61124 Batf2-201ENSMUST00000045042 1391 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Cln3Q61124 Usp1-202ENSMUST00000091358 3527 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Cln3Q61124 Tcf3-208ENSMUST00000105344 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
Cln3Q61124 Ms4a15-201ENSMUST00000087923 1713 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Cln3Q61124 Esrrb-202ENSMUST00000110203 2363 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Cln3Q61124 Sema3f-204ENSMUST00000192727 2383 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
Cln3Q61124 Kcnq1-201ENSMUST00000009689 3029 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Cln3Q61124 Sec24a-204ENSMUST00000109097 6581 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
Cln3Q61124 Fbxo48-201ENSMUST00000061327 2117 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Cln3Q61124 Clic6-201ENSMUST00000023670 3758 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Cln3Q61124 Dlgap1-208ENSMUST00000135938 2895 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
Cln3Q61124 Spata5-209ENSMUST00000198968 2916 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
Cln3Q61124 Adra1b-201ENSMUST00000067258 3331 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Cln3Q61124 Tfe3-211ENSMUST00000137467 3390 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Cln3Q61124 Cpeb3-201ENSMUST00000079754 5899 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
Cln3Q61124 Klhl33-204ENSMUST00000227271 5513 ntAPPRIS P1 BASIC14.06□□□□□ -0.16
Cln3Q61124 Gm26651-201ENSMUST00000181851 2325 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Cln3Q61124 Actr8-204ENSMUST00000224797 2328 ntAPPRIS P1 BASIC14.06□□□□□ -0.16
Cln3Q61124 Ighv5-4-201ENSMUST00000103444 425 ntAPPRIS P1 BASIC14.06□□□□□ -0.16
Cln3Q61124 Tpm1-210ENSMUST00000113693 1054 ntTSL 5 BASIC14.06□□□□□ -0.16
Cln3Q61124 Gm12201-201ENSMUST00000120657 1234 ntBASIC14.06□□□□□ -0.16
Cln3Q61124 Gm11985-201ENSMUST00000122910 1007 ntAPPRIS P1 TSL 5 BASIC14.06□□□□□ -0.16
Cln3Q61124 Dnajb6-202ENSMUST00000012734 1024 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Cln3Q61124 Gm28510-201ENSMUST00000190572 928 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Cln3Q61124 2210412B16Rik-201ENSMUST00000201281 498 ntBASIC14.06□□□□□ -0.16
Cln3Q61124 Gm44136-201ENSMUST00000203819 1106 ntBASIC14.06□□□□□ -0.16
Cln3Q61124 Gm44100-201ENSMUST00000204329 436 ntBASIC14.06□□□□□ -0.16
Cln3Q61124 Gm8959-201ENSMUST00000213150 571 ntBASIC14.06□□□□□ -0.16
Cln3Q61124 Ntan1-201ENSMUST00000023362 1175 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Cln3Q61124 Olfr398-201ENSMUST00000053874 945 ntAPPRIS P1 BASIC14.06□□□□□ -0.16
Cln3Q61124 Rps15-202ENSMUST00000068408 500 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Cln3Q61124 Cgn-202ENSMUST00000107273 5016 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
Cln3Q61124 Socs7-201ENSMUST00000045540 7015 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Cln3Q61124 Hp1bp3-204ENSMUST00000105826 3348 ntAPPRIS ALT2 TSL 5 BASIC14.06□□□□□ -0.16
Cln3Q61124 Fnbp1-206ENSMUST00000113555 1776 ntTSL 5 BASIC14.06□□□□□ -0.16
Cln3Q61124 Gm30238-201ENSMUST00000195528 2603 ntBASIC14.06□□□□□ -0.16
Cln3Q61124 Rtn4rl1-201ENSMUST00000102514 3525 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Cln3Q61124 Ripk3-201ENSMUST00000022830 1892 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Cln3Q61124 Lztr1-201ENSMUST00000023444 3112 ntAPPRIS P2 TSL 1 (best) BASIC14.06□□□□□ -0.16
Cln3Q61124 Atg16l1-201ENSMUST00000027512 3130 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
Cln3Q61124 Rdh19-201ENSMUST00000077530 1889 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Cln3Q61124 Dnmt3b-206ENSMUST00000103151 3956 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
Cln3Q61124 Gm2694-202ENSMUST00000180806 1452 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Cln3Q61124 Adgrb2-208ENSMUST00000121049 4871 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
Cln3Q61124 Epb41l1-202ENSMUST00000103135 6177 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
Cln3Q61124 Ikzf1-201ENSMUST00000018798 1542 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Cln3Q61124 Suclg1-201ENSMUST00000064740 1519 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Cln3Q61124 Bri3bp-201ENSMUST00000049040 6473 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Cln3Q61124 Car6-201ENSMUST00000030817 1567 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Cln3Q61124 Dennd4c-201ENSMUST00000045512 5648 ntAPPRIS ALT2 TSL 5 BASIC14.05□□□□□ -0.16
Cln3Q61124 Calcr-203ENSMUST00000168592 2064 ntAPPRIS ALT2 TSL 5 BASIC14.05□□□□□ -0.16
Cln3Q61124 Prmt2-203ENSMUST00000099572 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
Cln3Q61124 Sumf2-204ENSMUST00000171300 2264 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Cln3Q61124 Cluap1-201ENSMUST00000040881 1779 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Cln3Q61124 Gm12348-201ENSMUST00000138915 313 ntTSL 3 BASIC14.05□□□□□ -0.16
Cln3Q61124 Vdac1-201ENSMUST00000020673 891 ntTSL 5 BASIC14.05□□□□□ -0.16
Cln3Q61124 Gm3898-202ENSMUST00000216905 328 ntTSL 2 BASIC14.05□□□□□ -0.16
Cln3Q61124 Olfr887-201ENSMUST00000074681 930 ntAPPRIS P1 BASIC14.05□□□□□ -0.16
Cln3Q61124 H3f3a-205ENSMUST00000161308 2841 ntAPPRIS P2 TSL 1 (best) BASIC14.05□□□□□ -0.16
Cln3Q61124 AC166491.1-201ENSMUST00000227053 2308 ntBASIC14.05□□□□□ -0.16
Cln3Q61124 Adcy1-201ENSMUST00000020706 12259 ntAPPRIS P1 TSL 2 BASIC14.05□□□□□ -0.16
Cln3Q61124 Pcyt1a-202ENSMUST00000104893 4951 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
Cln3Q61124 Actg2-201ENSMUST00000075161 1333 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Cln3Q61124 Actn4-211ENSMUST00000217157 3530 ntTSL 5 BASIC14.05□□□□□ -0.16
Cln3Q61124 Rnls-202ENSMUST00000163093 1378 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Cln3Q61124 Cog3-201ENSMUST00000049168 4222 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Cln3Q61124 Mcur1-201ENSMUST00000021800 4339 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Cln3Q61124 Cyth1-204ENSMUST00000106305 3179 ntAPPRIS ALT1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Cln3Q61124 Gng4-201ENSMUST00000021734 3179 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Cln3Q61124 Zbtb5-202ENSMUST00000107817 3867 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Cln3Q61124 Anks1b-214ENSMUST00000182356 7561 ntTSL 5 BASIC14.05□□□□□ -0.16
Cln3Q61124 Pprc1-202ENSMUST00000099392 3956 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Cln3Q61124 2810474O19Rik-202ENSMUST00000100765 5356 ntAPPRIS P2 TSL 1 (best) BASIC14.05□□□□□ -0.16
Cln3Q61124 Fnbp1-203ENSMUST00000100207 1680 ntTSL 5 BASIC14.04□□□□□ -0.16
Cln3Q61124 CT025610.1-201ENSMUST00000224552 1786 ntBASIC14.04□□□□□ -0.16
Cln3Q61124 Trp53-202ENSMUST00000108657 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
Cln3Q61124 B230369F24Rik-201ENSMUST00000141846 2560 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Cln3Q61124 Depdc1b-201ENSMUST00000051594 2563 ntAPPRIS P2 TSL 1 (best) BASIC14.04□□□□□ -0.16
Cln3Q61124 Gm16853-201ENSMUST00000181812 1986 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Cln3Q61124 Unc119b-201ENSMUST00000060798 3659 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Cln3Q61124 Fthl17d-201ENSMUST00000105004 856 ntAPPRIS P1 BASIC14.04□□□□□ -0.16
Cln3Q61124 Cdk2ap1-204ENSMUST00000111474 1286 ntAPPRIS ALT1 TSL 2 BASIC14.04□□□□□ -0.16
Cln3Q61124 Pla2g1b-202ENSMUST00000112071 361 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Cln3Q61124 n-R5s14-201ENSMUST00000122688 107 ntBASIC14.04□□□□□ -0.16
Cln3Q61124 Gm13587-201ENSMUST00000152645 366 ntTSL 5 BASIC14.04□□□□□ -0.16
Cln3Q61124 Ccdc28a-203ENSMUST00000173243 590 ntTSL 5 BASIC14.04□□□□□ -0.16
Cln3Q61124 Ank3-234ENSMUST00000182993 1233 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Cln3Q61124 Gm32999-201ENSMUST00000192693 562 ntBASIC14.04□□□□□ -0.16
Cln3Q61124 Gm17812-201ENSMUST00000204935 318 ntBASIC14.04□□□□□ -0.16
Cln3Q61124 AC131743.2-201ENSMUST00000221031 968 ntTSL 5 BASIC14.04□□□□□ -0.16
Cln3Q61124 Rsph1-201ENSMUST00000024832 1164 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Cln3Q61124 Asphd1-201ENSMUST00000052937 730 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
Cln3Q61124 Gm10076-201ENSMUST00000073238 384 ntBASIC14.04□□□□□ -0.16
Cln3Q61124 Asb18-202ENSMUST00000097656 788 ntTSL 5 BASIC14.04□□□□□ -0.16
Cln3Q61124 Spatc1l-201ENSMUST00000009259 1332 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Cln3Q61124 Clcn3-204ENSMUST00000110301 4099 ntAPPRIS ALT1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Cln3Q61124 Barhl2-201ENSMUST00000086795 2314 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Cln3Q61124 Acin1-202ENSMUST00000022794 2365 ntAPPRIS ALT2 TSL 5 BASIC14.04□□□□□ -0.16
Cln3Q61124 Ctbp1-212ENSMUST00000202962 3595 ntTSL 2 BASIC14.04□□□□□ -0.16
Cln3Q61124 Caprin2-202ENSMUST00000111569 3697 ntAPPRIS P2 TSL 1 (best) BASIC14.04□□□□□ -0.16
Retrieved 100 of 76,532 protein–RNA pairs in 56.4 ms