Protein–RNA interactions for Protein: P58872

RHBDL3, Rhomboid-related protein 3, humanhuman

Predictions only

Length 404 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RHBDL3P58872 REXO1L6P-201ENST00000603433 1515 ntBASIC18.62■□□□□ 0.57
RHBDL3P58872 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
RHBDL3P58872 ABCC9-203ENST00000326684 1693 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
RHBDL3P58872 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC18.62■□□□□ 0.57
RHBDL3P58872 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
RHBDL3P58872 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC18.62■□□□□ 0.57
RHBDL3P58872 AL603832.2-201ENST00000566195 2125 ntBASIC18.62■□□□□ 0.57
RHBDL3P58872 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC18.62■□□□□ 0.57
RHBDL3P58872 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC18.62■□□□□ 0.57
RHBDL3P58872 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
RHBDL3P58872 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
RHBDL3P58872 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC18.62■□□□□ 0.57
RHBDL3P58872 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC18.62■□□□□ 0.57
RHBDL3P58872 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
RHBDL3P58872 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC18.62■□□□□ 0.57
RHBDL3P58872 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
RHBDL3P58872 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
RHBDL3P58872 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
RHBDL3P58872 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
RHBDL3P58872 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
RHBDL3P58872 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
RHBDL3P58872 KSR1-216ENST00000582410 2392 ntTSL 2 BASIC18.61■□□□□ 0.57
RHBDL3P58872 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC18.61■□□□□ 0.57
RHBDL3P58872 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
RHBDL3P58872 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC18.61■□□□□ 0.57
RHBDL3P58872 ARFIP1-202ENST00000356064 1302 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
RHBDL3P58872 ENO3-206ENST00000519584 1322 ntTSL 2 BASIC18.61■□□□□ 0.57
RHBDL3P58872 GPR148-201ENST00000309926 1267 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
RHBDL3P58872 PHACTR1-202ENST00000379329 707 ntTSL 2 BASIC18.61■□□□□ 0.57
RHBDL3P58872 MPV17-208ENST00000405076 603 ntTSL 5 BASIC18.61■□□□□ 0.57
RHBDL3P58872 Z94721.1-201ENST00000444102 385 ntTSL 5 BASIC18.61■□□□□ 0.57
RHBDL3P58872 AL355864.2-201ENST00000447420 863 ntBASIC18.61■□□□□ 0.57
RHBDL3P58872 AC007551.1-201ENST00000457394 519 ntBASIC18.61■□□□□ 0.57
RHBDL3P58872 TMEM14B-204ENST00000461342 559 ntTSL 2 BASIC18.61■□□□□ 0.57
RHBDL3P58872 FAM162A-202ENST00000469967 1015 ntTSL 2 BASIC18.61■□□□□ 0.57
RHBDL3P58872 AL583810.1-201ENST00000553344 1045 ntBASIC18.61■□□□□ 0.57
RHBDL3P58872 AIPL1-204ENST00000570466 1196 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
RHBDL3P58872 TBCB-211ENST00000589996 724 ntTSL 3 BASIC18.61■□□□□ 0.57
RHBDL3P58872 AC244669.2-201ENST00000612320 853 ntBASIC18.61■□□□□ 0.57
RHBDL3P58872 APOBEC3H-206ENST00000613677 730 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
RHBDL3P58872 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC18.61■□□□□ 0.57
RHBDL3P58872 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC18.61■□□□□ 0.57
RHBDL3P58872 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
RHBDL3P58872 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC18.61■□□□□ 0.57
RHBDL3P58872 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
RHBDL3P58872 CCDC110-209ENST00000510617 2592 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
RHBDL3P58872 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC18.61■□□□□ 0.57
RHBDL3P58872 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
RHBDL3P58872 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC18.6■□□□□ 0.57
RHBDL3P58872 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
RHBDL3P58872 MIIP-201ENST00000235332 1573 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
RHBDL3P58872 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC18.6■□□□□ 0.57
RHBDL3P58872 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC18.6■□□□□ 0.57
RHBDL3P58872 COMT-205ENST00000406520 1339 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
RHBDL3P58872 MFF-204ENST00000353339 2186 ntTSL 5 BASIC18.6■□□□□ 0.57
RHBDL3P58872 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
RHBDL3P58872 AGRP-201ENST00000290953 764 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
RHBDL3P58872 CACNG5-201ENST00000307139 926 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
RHBDL3P58872 GZMB-202ENST00000382540 816 ntTSL 5 BASIC18.6■□□□□ 0.57
RHBDL3P58872 SPEG-202ENST00000396686 1086 ntTSL 3 BASIC18.6■□□□□ 0.57
RHBDL3P58872 HSPC324-201ENST00000411904 557 ntTSL 2 BASIC18.6■□□□□ 0.57
RHBDL3P58872 SNHG11-212ENST00000449351 954 ntTSL 5 BASIC18.6■□□□□ 0.57
RHBDL3P58872 AC012574.2-201ENST00000520375 443 ntTSL 3 BASIC18.6■□□□□ 0.57
RHBDL3P58872 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC18.6■□□□□ 0.57
RHBDL3P58872 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
RHBDL3P58872 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC18.6■□□□□ 0.57
RHBDL3P58872 FAM118B-210ENST00000627851 1862 ntTSL 5 BASIC18.6■□□□□ 0.57
RHBDL3P58872 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
RHBDL3P58872 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC18.6■□□□□ 0.57
RHBDL3P58872 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
RHBDL3P58872 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
RHBDL3P58872 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC18.6■□□□□ 0.57
RHBDL3P58872 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
RHBDL3P58872 AC024909.3-201ENST00000611513 2257 ntBASIC18.6■□□□□ 0.57
RHBDL3P58872 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC18.6■□□□□ 0.57
RHBDL3P58872 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
RHBDL3P58872 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
RHBDL3P58872 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC18.59■□□□□ 0.57
RHBDL3P58872 CD2BP2-203ENST00000569466 1417 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
RHBDL3P58872 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
RHBDL3P58872 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC18.59■□□□□ 0.57
RHBDL3P58872 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
RHBDL3P58872 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
RHBDL3P58872 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
RHBDL3P58872 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC18.59■□□□□ 0.57
RHBDL3P58872 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
RHBDL3P58872 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
RHBDL3P58872 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC18.59■□□□□ 0.57
RHBDL3P58872 ZNF815P-202ENST00000422825 805 ntTSL 5 BASIC18.59■□□□□ 0.57
RHBDL3P58872 CSF2RBP1-201ENST00000447905 391 ntBASIC18.59■□□□□ 0.57
RHBDL3P58872 TMEM225B-203ENST00000453227 1041 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
RHBDL3P58872 AC092658.1-201ENST00000505836 891 ntBASIC18.59■□□□□ 0.57
RHBDL3P58872 STMN4-207ENST00000523048 1224 ntTSL 2 BASIC18.59■□□□□ 0.57
RHBDL3P58872 ZNF790-AS1-204ENST00000589556 650 ntTSL 2 BASIC18.59■□□□□ 0.57
RHBDL3P58872 TUBB6-213ENST00000591909 1017 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
RHBDL3P58872 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
RHBDL3P58872 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
RHBDL3P58872 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC18.59■□□□□ 0.57
RHBDL3P58872 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
RHBDL3P58872 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC18.59■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 69.4 ms