Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 Alg2-201ENSMUST00000044148 3021 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Cux1P53564 Spop-202ENSMUST00000107724 2881 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Cux1P53564 Ddx55-202ENSMUST00000111438 2737 ntTSL 2 BASIC19.46■□□□□ 0.71
Cux1P53564 Astl-202ENSMUST00000089673 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
Cux1P53564 Gm6580-201ENSMUST00000117504 1357 ntBASIC19.46■□□□□ 0.71
Cux1P53564 Pdcd6ip-202ENSMUST00000111861 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
Cux1P53564 Col26a1-201ENSMUST00000057497 2724 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
Cux1P53564 Cd247-201ENSMUST00000005907 1632 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Cux1P53564 Bmper-201ENSMUST00000071982 3791 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Cux1P53564 Shpk-201ENSMUST00000006105 2808 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Cux1P53564 Gm5732-201ENSMUST00000182596 1007 ntBASIC19.46■□□□□ 0.71
Cux1P53564 Tepp-207ENSMUST00000212056 613 ntAPPRIS ALT2 TSL 5 BASIC19.46■□□□□ 0.71
Cux1P53564 Cmtm2b-201ENSMUST00000041973 880 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Cux1P53564 Gm11938-201ENSMUST00000072306 663 ntAPPRIS P1 BASIC19.46■□□□□ 0.71
Cux1P53564 Cd320-202ENSMUST00000087559 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
Cux1P53564 Gps1-201ENSMUST00000100134 1925 ntTSL 2 BASIC19.45■□□□□ 0.7
Cux1P53564 Cntfr-204ENSMUST00000102962 1926 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Cux1P53564 4930428O21Rik-201ENSMUST00000198537 1740 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Cux1P53564 Metap2-206ENSMUST00000180840 2551 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Cux1P53564 Gm36745-201ENSMUST00000213455 1594 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Cux1P53564 Ccndbp1-201ENSMUST00000060455 1569 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
Cux1P53564 Nmral1-204ENSMUST00000120056 2440 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Cux1P53564 Fam219a-202ENSMUST00000108050 3321 ntTSL 5 BASIC19.45■□□□□ 0.7
Cux1P53564 Arpc1b-201ENSMUST00000085679 3105 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
Cux1P53564 Bag6-202ENSMUST00000166426 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
Cux1P53564 Desi1-206ENSMUST00000152227 2934 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Cux1P53564 Arhgef40-220ENSMUST00000182909 5108 ntAPPRIS P4 TSL 5 BASIC19.45■□□□□ 0.7
Cux1P53564 Gm43721-201ENSMUST00000199677 2313 ntBASIC19.45■□□□□ 0.7
Cux1P53564 Nek8-201ENSMUST00000017549 2809 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Cux1P53564 Rec8-201ENSMUST00000002395 2184 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Cux1P53564 Sf1-204ENSMUST00000113489 2863 ntTSL 5 BASIC19.45■□□□□ 0.7
Cux1P53564 Cd80-201ENSMUST00000099816 1701 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Cux1P53564 Gm23596-201ENSMUST00000104304 132 ntBASIC19.45■□□□□ 0.7
Cux1P53564 Tnnt3-206ENSMUST00000105944 753 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
Cux1P53564 Tnnt3-210ENSMUST00000105948 753 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
Cux1P53564 Tnnt3-212ENSMUST00000105950 1037 ntAPPRIS ALT2 TSL 5 BASIC19.45■□□□□ 0.7
Cux1P53564 Asb8-202ENSMUST00000123626 1100 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Cux1P53564 Asb8-203ENSMUST00000123922 1162 ntAPPRIS P1 TSL 3 BASIC19.45■□□□□ 0.7
Cux1P53564 Gm12298-201ENSMUST00000126999 731 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Cux1P53564 Tnnt3-224ENSMUST00000169299 1013 ntAPPRIS ALT2 TSL 5 BASIC19.45■□□□□ 0.7
Cux1P53564 Gm21859-201ENSMUST00000178424 1045 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Cux1P53564 Tnnt3-226ENSMUST00000180152 1067 ntAPPRIS ALT2 TSL 5 BASIC19.45■□□□□ 0.7
Cux1P53564 Gm4482-201ENSMUST00000200876 742 ntBASIC19.45■□□□□ 0.7
Cux1P53564 Gm43916-201ENSMUST00000205062 967 ntBASIC19.45■□□□□ 0.7
Cux1P53564 Amz1-201ENSMUST00000060918 2683 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Cux1P53564 Pcdh7-201ENSMUST00000068110 5611 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
Cux1P53564 Ssfa2-202ENSMUST00000111785 5168 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
Cux1P53564 Ero1lb-202ENSMUST00000220811 3341 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Cux1P53564 Izumo1-201ENSMUST00000033100 1493 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Cux1P53564 Neurl1a-201ENSMUST00000111807 3679 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
Cux1P53564 Nrf1-219ENSMUST00000167972 1541 ntTSL 5 BASIC19.44■□□□□ 0.7
Cux1P53564 Fam160a2-204ENSMUST00000122327 3521 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
Cux1P53564 Fam129a-203ENSMUST00000111875 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
Cux1P53564 Gm15432-201ENSMUST00000121106 195 ntBASIC19.44■□□□□ 0.7
Cux1P53564 Gm10752-201ENSMUST00000218348 729 ntBASIC19.44■□□□□ 0.7
Cux1P53564 Gm4797-201ENSMUST00000219075 1283 ntBASIC19.44■□□□□ 0.7
Cux1P53564 Ggps1-204ENSMUST00000221713 667 ntTSL 3 BASIC19.44■□□□□ 0.7
Cux1P53564 Pde8b-207ENSMUST00000162153 2474 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Cux1P53564 Zfp957-202ENSMUST00000161649 2751 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
Cux1P53564 Adh4-201ENSMUST00000013458 1314 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Cux1P53564 Gm26543-201ENSMUST00000180729 2221 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Cux1P53564 Arhgap44-201ENSMUST00000047463 4074 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
Cux1P53564 Sox21-201ENSMUST00000170662 3799 ntAPPRIS P1 BASIC19.44■□□□□ 0.7
Cux1P53564 Rph3al-201ENSMUST00000021208 1690 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Cux1P53564 Mthfsd-210ENSMUST00000139782 1366 ntTSL 5 BASIC19.44■□□□□ 0.7
Cux1P53564 Rnpepl1-201ENSMUST00000027487 3337 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Cux1P53564 Trim50-202ENSMUST00000111180 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
Cux1P53564 AC163354.1-205ENSMUST00000223262 1511 ntTSL 5 BASIC19.43■□□□□ 0.7
Cux1P53564 Slc35f1-201ENSMUST00000105473 4941 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Cux1P53564 Etv1-211ENSMUST00000162563 1865 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
Cux1P53564 Fut9-202ENSMUST00000108199 2579 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Cux1P53564 Zmynd11-207ENSMUST00000110638 4003 ntTSL 5 BASIC19.43■□□□□ 0.7
Cux1P53564 Ankrd44-210ENSMUST00000179030 6140 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
Cux1P53564 Gm6210-201ENSMUST00000204734 1942 ntBASIC19.43■□□□□ 0.7
Cux1P53564 Ptprt-201ENSMUST00000109441 6623 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
Cux1P53564 Nkain3-201ENSMUST00000102998 3098 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Cux1P53564 Tbc1d22bos-201ENSMUST00000159875 826 ntTSL 3 BASIC19.43■□□□□ 0.7
Cux1P53564 Cct2-206ENSMUST00000219573 637 ntTSL 3 BASIC19.43■□□□□ 0.7
Cux1P53564 AC154305.4-201ENSMUST00000224520 614 ntBASIC19.43■□□□□ 0.7
Cux1P53564 Gm1821-202ENSMUST00000227415 750 ntBASIC19.43■□□□□ 0.7
Cux1P53564 1700028J19Rik-201ENSMUST00000037220 1245 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Cux1P53564 Gm5965-201ENSMUST00000009191 588 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
Cux1P53564 Fosl2-201ENSMUST00000031017 6537 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Cux1P53564 Gpr137c-201ENSMUST00000146150 3917 ntAPPRIS P2 TSL 5 BASIC19.43■□□□□ 0.7
Cux1P53564 Ep300-201ENSMUST00000068387 9566 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Cux1P53564 4731419I09Rik-201ENSMUST00000180791 2820 ntTSL 2 BASIC19.43■□□□□ 0.7
Cux1P53564 Tead3-207ENSMUST00000219703 1320 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Cux1P53564 Pnkp-201ENSMUST00000003044 2184 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Cux1P53564 Kif21a-205ENSMUST00000109288 6142 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
Cux1P53564 Itsn1-203ENSMUST00000095909 6103 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Cux1P53564 Cacna2d3-201ENSMUST00000022567 3695 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Cux1P53564 Hsp90b1-201ENSMUST00000020238 2825 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Cux1P53564 Gm10767-202ENSMUST00000168767 2067 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Cux1P53564 Slc25a45-202ENSMUST00000125114 2599 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Cux1P53564 Rnps1-201ENSMUST00000088512 1798 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Cux1P53564 Gm14190-201ENSMUST00000105073 153 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
Cux1P53564 A430060F13Rik-201ENSMUST00000124176 378 ntBASIC19.42■□□□□ 0.7
Cux1P53564 Gm25881-201ENSMUST00000157783 103 ntBASIC19.42■□□□□ 0.7
Cux1P53564 Gm8365-201ENSMUST00000197334 648 ntBASIC19.42■□□□□ 0.7
Cux1P53564 Gm10069-203ENSMUST00000204081 907 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Retrieved 100 of 76,532 protein–RNA pairs in 45.4 ms