Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Herc4-208ENSMUST00000219577 3914 ntAPPRIS ALT1 TSL 1 (best) BASIC10.64□□□□□ -0.71
Hmgb3O54879 Gm9951-202ENSMUST00000149618 1772 ntTSL 2 BASIC10.64□□□□□ -0.71
Hmgb3O54879 Slc39a6-201ENSMUST00000070726 3882 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
Hmgb3O54879 Prkar1b-203ENSMUST00000110890 2626 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
Hmgb3O54879 Stk33-204ENSMUST00000121748 2295 ntAPPRIS P1 TSL 5 BASIC10.64□□□□□ -0.71
Hmgb3O54879 Foxo6os-201ENSMUST00000152384 2291 ntTSL 1 (best) BASIC10.64□□□□□ -0.71
Hmgb3O54879 Tcf4-250ENSMUST00000202458 2610 ntTSL 5 BASIC10.64□□□□□ -0.71
Hmgb3O54879 Ddb2-201ENSMUST00000028696 1557 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
Hmgb3O54879 Gm16278-201ENSMUST00000148064 2071 ntTSL 1 (best) BASIC10.64□□□□□ -0.71
Hmgb3O54879 1110032A03Rik-201ENSMUST00000042468 2082 ntAPPRIS P3 TSL 1 (best) BASIC10.64□□□□□ -0.71
Hmgb3O54879 Tmem63b-201ENSMUST00000113523 3284 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
Hmgb3O54879 Gm42890-202ENSMUST00000167642 2566 ntTSL 1 (best) BASIC10.64□□□□□ -0.71
Hmgb3O54879 Gm37269-201ENSMUST00000193906 1891 ntBASIC10.64□□□□□ -0.71
Hmgb3O54879 Myo18a-201ENSMUST00000000645 7307 ntAPPRIS ALT2 TSL 5 BASIC10.64□□□□□ -0.71
Hmgb3O54879 Eef1akmt3-201ENSMUST00000116231 2719 ntAPPRIS P1 TSL 5 BASIC10.64□□□□□ -0.71
Hmgb3O54879 Ppp3r1-201ENSMUST00000102880 2859 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
Hmgb3O54879 Tcea1-201ENSMUST00000081551 2547 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
Hmgb3O54879 Vps13b-201ENSMUST00000048646 13757 ntAPPRIS P1 TSL 5 BASIC10.63□□□□□ -0.71
Hmgb3O54879 Tufm-201ENSMUST00000098048 1679 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
Hmgb3O54879 Zfp532-201ENSMUST00000049016 5503 ntTSL 1 (best) BASIC10.63□□□□□ -0.71
Hmgb3O54879 Tiparp-201ENSMUST00000047906 4191 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
Hmgb3O54879 Nlgn3-201ENSMUST00000065858 8465 ntAPPRIS P2 TSL 1 (best) BASIC10.63□□□□□ -0.71
Hmgb3O54879 Fn3k-202ENSMUST00000092302 1803 ntTSL 1 (best) BASIC10.63□□□□□ -0.71
Hmgb3O54879 Bicd2-202ENSMUST00000110084 4488 ntAPPRIS ALT2 TSL 1 (best) BASIC10.63□□□□□ -0.71
Hmgb3O54879 Abat-202ENSMUST00000115838 1348 ntTSL 2 BASIC10.63□□□□□ -0.71
Hmgb3O54879 Foxs1-201ENSMUST00000099200 1311 ntAPPRIS P1 BASIC10.63□□□□□ -0.71
Hmgb3O54879 Fads1-201ENSMUST00000010807 3456 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
Hmgb3O54879 E2f8-202ENSMUST00000119223 3499 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
Hmgb3O54879 Arhgef4-204ENSMUST00000159747 6514 ntAPPRIS ALT2 TSL 5 BASIC10.63□□□□□ -0.71
Hmgb3O54879 Fgfr1op-201ENSMUST00000024636 3077 ntAPPRIS P3 TSL 1 (best) BASIC10.63□□□□□ -0.71
Hmgb3O54879 Acer1-201ENSMUST00000056113 2429 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
Hmgb3O54879 Akap10-202ENSMUST00000102650 3874 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
Hmgb3O54879 Gba-202ENSMUST00000167998 1938 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
Hmgb3O54879 Ctr9-201ENSMUST00000005749 4300 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
Hmgb3O54879 Aph1a-201ENSMUST00000015894 2863 ntTSL 1 (best) BASIC10.63□□□□□ -0.71
Hmgb3O54879 Zfp46-201ENSMUST00000069195 4639 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
Hmgb3O54879 Med28-202ENSMUST00000118833 734 ntTSL 2 BASIC10.63□□□□□ -0.71
Hmgb3O54879 Mir1897-201ENSMUST00000122581 272 ntBASIC10.63□□□□□ -0.71
Hmgb3O54879 H60b-202ENSMUST00000131558 1080 ntAPPRIS P1 TSL 5 BASIC10.63□□□□□ -0.71
Hmgb3O54879 Nsd3-203ENSMUST00000136107 3818 ntTSL 1 (best) BASIC10.63□□□□□ -0.71
Hmgb3O54879 Mpv17-203ENSMUST00000200833 1171 ntTSL 5 BASIC10.63□□□□□ -0.71
Hmgb3O54879 Tmem129-204ENSMUST00000200849 657 ntTSL 3 BASIC10.63□□□□□ -0.71
Hmgb3O54879 Gm31545-201ENSMUST00000209358 1219 ntTSL 5 BASIC10.63□□□□□ -0.71
Hmgb3O54879 March3-201ENSMUST00000035278 860 ntAPPRIS P1 TSL 3 BASIC10.63□□□□□ -0.71
Hmgb3O54879 1700018B24Rik-201ENSMUST00000036023 593 ntTSL 1 (best) BASIC10.63□□□□□ -0.71
Hmgb3O54879 Peg10-202ENSMUST00000176204 6667 ntAPPRIS P2 TSL 2 BASIC10.63□□□□□ -0.71
Hmgb3O54879 Lrrc10-201ENSMUST00000073834 1428 ntAPPRIS P1 BASIC10.63□□□□□ -0.71
Hmgb3O54879 Grid2ip-201ENSMUST00000010969 3459 ntTSL 1 (best) BASIC10.63□□□□□ -0.71
Hmgb3O54879 CT025678.1-201ENSMUST00000214795 2972 ntBASIC10.63□□□□□ -0.71
Hmgb3O54879 Plec-217ENSMUST00000169438 14827 ntTSL 1 (best) BASIC10.63□□□□□ -0.71
Hmgb3O54879 Pex2-204ENSMUST00000165309 2038 ntAPPRIS P1 TSL 5 BASIC10.63□□□□□ -0.71
Hmgb3O54879 Ank2-203ENSMUST00000182008 2474 ntTSL 1 (best) BASIC10.63□□□□□ -0.71
Hmgb3O54879 Timeless-201ENSMUST00000055539 4457 ntAPPRIS P3 TSL 1 (best) BASIC10.63□□□□□ -0.71
Hmgb3O54879 Plec-215ENSMUST00000169108 14853 ntAPPRIS ALT2 TSL 1 (best) BASIC10.63□□□□□ -0.71
Hmgb3O54879 Mthfsd-202ENSMUST00000116415 1520 ntAPPRIS ALT2 TSL 1 (best) BASIC10.63□□□□□ -0.71
Hmgb3O54879 Comt-204ENSMUST00000165430 1978 ntAPPRIS P1 TSL 5 BASIC10.63□□□□□ -0.71
Hmgb3O54879 Chd8-201ENSMUST00000089752 8190 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
Hmgb3O54879 Cdc7-203ENSMUST00000117196 2864 ntAPPRIS ALT2 TSL 1 (best) BASIC10.63□□□□□ -0.71
Hmgb3O54879 Dnajb1-202ENSMUST00000212300 2854 ntTSL 1 (best) BASIC10.63□□□□□ -0.71
Hmgb3O54879 Selenot-201ENSMUST00000107924 3157 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
Hmgb3O54879 Frmd8-201ENSMUST00000025728 4504 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
Hmgb3O54879 Pomgnt1-205ENSMUST00000121052 2693 ntAPPRIS P1 TSL 5 BASIC10.62□□□□□ -0.71
Hmgb3O54879 Gpa33-202ENSMUST00000060833 2515 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
Hmgb3O54879 Mgme1-202ENSMUST00000110027 2359 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
Hmgb3O54879 Gm3052-202ENSMUST00000188254 2224 ntBASIC10.62□□□□□ -0.71
Hmgb3O54879 Slc25a12-206ENSMUST00000151937 6351 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
Hmgb3O54879 Gm43045-201ENSMUST00000198725 2095 ntBASIC10.62□□□□□ -0.71
Hmgb3O54879 Gprc5a-201ENSMUST00000050104 2083 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
Hmgb3O54879 Syncrip-209ENSMUST00000174361 1767 ntTSL 5 BASIC10.62□□□□□ -0.71
Hmgb3O54879 Cant1-203ENSMUST00000106287 1476 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
Hmgb3O54879 Nin-201ENSMUST00000021468 6708 ntAPPRIS ALT2 TSL 1 (best) BASIC10.62□□□□□ -0.71
Hmgb3O54879 Xpnpep1-209ENSMUST00000183108 4078 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
Hmgb3O54879 Tcf4-226ENSMUST00000201094 2172 ntTSL 5 BASIC10.62□□□□□ -0.71
Hmgb3O54879 Krt35-201ENSMUST00000103127 1722 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
Hmgb3O54879 Sirt3-202ENSMUST00000106048 1416 ntAPPRIS P2 TSL 1 (best) BASIC10.62□□□□□ -0.71
Hmgb3O54879 Glod4-201ENSMUST00000017430 1434 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
Hmgb3O54879 Enoph1-201ENSMUST00000031268 1420 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
Hmgb3O54879 Sin3b-201ENSMUST00000004494 4115 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
Hmgb3O54879 Vsig10l-201ENSMUST00000107977 3836 ntAPPRIS ALT2 TSL 5 BASIC10.62□□□□□ -0.71
Hmgb3O54879 Psmb1-201ENSMUST00000014913 1036 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
Hmgb3O54879 Mir7221-201ENSMUST00000184009 72 ntBASIC10.62□□□□□ -0.71
Hmgb3O54879 AC093022.5-201ENSMUST00000226841 1079 ntBASIC10.62□□□□□ -0.71
Hmgb3O54879 AC132467.2-202ENSMUST00000227726 559 ntBASIC10.62□□□□□ -0.71
Hmgb3O54879 Gnmt-201ENSMUST00000002846 1035 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
Hmgb3O54879 Ephx4-201ENSMUST00000049146 1279 ntAPPRIS P1 TSL 2 BASIC10.62□□□□□ -0.71
Hmgb3O54879 Cyb561d1-201ENSMUST00000065664 4058 ntAPPRIS ALT1 TSL 1 (best) BASIC10.62□□□□□ -0.71
Hmgb3O54879 Chl1-204ENSMUST00000203912 4628 ntAPPRIS ALT2 TSL 1 (best) BASIC10.62□□□□□ -0.71
Hmgb3O54879 Pdcd11-201ENSMUST00000072141 6041 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
Hmgb3O54879 Tollip-201ENSMUST00000001950 3788 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
Hmgb3O54879 Gtf2i-210ENSMUST00000173341 4302 ntTSL 1 (best) BASIC10.62□□□□□ -0.71
Hmgb3O54879 Ccdc25-201ENSMUST00000022614 2230 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
Hmgb3O54879 Suclg1-201ENSMUST00000064740 1519 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
Hmgb3O54879 Gm1995-201ENSMUST00000220838 2602 ntBASIC10.62□□□□□ -0.71
Hmgb3O54879 Ccdc42-203ENSMUST00000154294 1384 ntAPPRIS P1 TSL 5 BASIC10.62□□□□□ -0.71
Hmgb3O54879 Tsku-207ENSMUST00000206414 2310 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
Hmgb3O54879 Crat-201ENSMUST00000028207 3833 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
Hmgb3O54879 Rnps1-201ENSMUST00000088512 1798 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
Hmgb3O54879 4933406P04Rik-201ENSMUST00000092680 1789 ntBASIC10.62□□□□□ -0.71
Hmgb3O54879 Olfr624-201ENSMUST00000062144 5731 ntAPPRIS P1 BASIC10.62□□□□□ -0.71
Hmgb3O54879 Slc6a4-201ENSMUST00000021195 2725 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
Retrieved 100 of 76,532 protein–RNA pairs in 96.2 ms