Protein–RNA interactions for Protein: Q8CII8

Syne4, Nesprin-4, mousemouse

Predictions only

Length 388 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Syne4Q8CII8 Gngt2-201ENSMUST00000036088 1587 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Syne4Q8CII8 Ska1-201ENSMUST00000040188 2669 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Syne4Q8CII8 Vwc2-202ENSMUST00000109681 3371 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Syne4Q8CII8 Jazf1-201ENSMUST00000074541 2203 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Syne4Q8CII8 Gm43738-201ENSMUST00000200659 2635 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
Syne4Q8CII8 Il12rb1-205ENSMUST00000212657 2741 ntAPPRIS ALT2 TSL 5 BASIC14.54□□□□□ -0.08
Syne4Q8CII8 Rab39-201ENSMUST00000068449 2971 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Syne4Q8CII8 Ric8b-201ENSMUST00000038523 3069 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
Syne4Q8CII8 Gnai1-201ENSMUST00000074694 3135 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Syne4Q8CII8 Ccdc28a-203ENSMUST00000173243 590 ntTSL 5 BASIC14.54□□□□□ -0.08
Syne4Q8CII8 Gm42920-201ENSMUST00000196616 409 ntTSL 3 BASIC14.54□□□□□ -0.08
Syne4Q8CII8 D9Wsu149-201ENSMUST00000214169 594 ntBASIC14.54□□□□□ -0.08
Syne4Q8CII8 Gm39460-201ENSMUST00000215728 1266 ntTSL 5 BASIC14.54□□□□□ -0.08
Syne4Q8CII8 Ppie-201ENSMUST00000030404 1188 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Syne4Q8CII8 Rab13-201ENSMUST00000065418 1107 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Syne4Q8CII8 Atp13a2-203ENSMUST00000127833 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
Syne4Q8CII8 Megf6-201ENSMUST00000030897 6851 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
Syne4Q8CII8 Grin3a-202ENSMUST00000093859 7491 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
Syne4Q8CII8 1810032O08Rik-201ENSMUST00000106378 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
Syne4Q8CII8 Tmem254a-204ENSMUST00000185006 2147 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Syne4Q8CII8 Gm4756-202ENSMUST00000208039 2344 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
Syne4Q8CII8 A530083I20Rik-201ENSMUST00000180486 2421 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
Syne4Q8CII8 Rcsd1-201ENSMUST00000040357 2622 ntAPPRIS P4 TSL 1 (best) BASIC14.54□□□□□ -0.08
Syne4Q8CII8 Glrx3-203ENSMUST00000211496 3440 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
Syne4Q8CII8 Acsl6-210ENSMUST00000108905 5807 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
Syne4Q8CII8 Mtss1-201ENSMUST00000080371 4938 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Syne4Q8CII8 2310035C23Rik-201ENSMUST00000039173 4328 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
Syne4Q8CII8 Rnf4-204ENSMUST00000182047 2944 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Syne4Q8CII8 Tcf3-205ENSMUST00000105341 2451 ntAPPRIS ALT2 TSL 5 BASIC14.53□□□□□ -0.08
Syne4Q8CII8 Acin1-219ENSMUST00000148754 2373 ntAPPRIS ALT2 TSL 5 BASIC14.53□□□□□ -0.08
Syne4Q8CII8 Mixl1-201ENSMUST00000027778 2294 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Syne4Q8CII8 1600020E01Rik-206ENSMUST00000204663 2007 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Syne4Q8CII8 Cplx4-201ENSMUST00000025397 1751 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Syne4Q8CII8 Hhatl-202ENSMUST00000163981 1744 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Syne4Q8CII8 Prss30-201ENSMUST00000024936 1470 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Syne4Q8CII8 Fam170a-201ENSMUST00000039121 1342 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Syne4Q8CII8 Rnf133-201ENSMUST00000063548 1308 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Syne4Q8CII8 Gm12690-201ENSMUST00000132108 354 ntTSL 3 BASIC14.53□□□□□ -0.08
Syne4Q8CII8 Bcas3os2-201ENSMUST00000134305 661 ntTSL 5 BASIC14.53□□□□□ -0.08
Syne4Q8CII8 Gm11831-201ENSMUST00000141538 629 ntTSL 3 BASIC14.53□□□□□ -0.08
Syne4Q8CII8 Gm21982-201ENSMUST00000146232 3821 ntTSL 2 BASIC14.53□□□□□ -0.08
Syne4Q8CII8 Gm38304-201ENSMUST00000161826 600 ntTSL 3 BASIC14.53□□□□□ -0.08
Syne4Q8CII8 Gm5051-201ENSMUST00000204085 485 ntBASIC14.53□□□□□ -0.08
Syne4Q8CII8 Cacng1-201ENSMUST00000021065 1249 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Syne4Q8CII8 4930564D02Rik-201ENSMUST00000070584 737 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Syne4Q8CII8 Ufc1-201ENSMUST00000080001 1007 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Syne4Q8CII8 Poli-205ENSMUST00000161542 2736 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Syne4Q8CII8 Scyl3-201ENSMUST00000027876 4368 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
Syne4Q8CII8 Gcat-201ENSMUST00000006544 2365 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Syne4Q8CII8 Kctd14-204ENSMUST00000205577 2310 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
Syne4Q8CII8 Bbof1-201ENSMUST00000081828 2187 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Syne4Q8CII8 Rlbp1-202ENSMUST00000179243 2142 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Syne4Q8CII8 Kyat1-204ENSMUST00000113661 2057 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Syne4Q8CII8 Gpr19-204ENSMUST00000116515 2075 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Syne4Q8CII8 Prrt3-205ENSMUST00000205170 1903 ntAPPRIS ALT2 TSL 2 BASIC14.53□□□□□ -0.08
Syne4Q8CII8 F830115B05Rik-201ENSMUST00000197638 1894 ntBASIC14.52□□□□□ -0.08
Syne4Q8CII8 Gm43823-201ENSMUST00000197391 1808 ntBASIC14.52□□□□□ -0.08
Syne4Q8CII8 A230072I06Rik-201ENSMUST00000098935 1839 ntAPPRIS P1 BASIC14.52□□□□□ -0.08
Syne4Q8CII8 Tlr2-201ENSMUST00000029623 3014 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Syne4Q8CII8 Reep5-201ENSMUST00000006027 2894 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Syne4Q8CII8 Rbm33-201ENSMUST00000030920 3955 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
Syne4Q8CII8 Ccp110-202ENSMUST00000106557 5073 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Syne4Q8CII8 Gpr157-201ENSMUST00000094451 4900 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Syne4Q8CII8 Hnrnpa2b1-204ENSMUST00000203220 1638 ntAPPRIS P2 TSL 1 (best) BASIC14.52□□□□□ -0.08
Syne4Q8CII8 Bcat1-202ENSMUST00000048252 1642 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
Syne4Q8CII8 Gtf3c5-202ENSMUST00000113889 2667 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.08
Syne4Q8CII8 Setdb1-203ENSMUST00000107171 4573 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.08
Syne4Q8CII8 Prok2-203ENSMUST00000101120 1450 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Syne4Q8CII8 Cd8b1-201ENSMUST00000065248 1483 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Syne4Q8CII8 Cpne1-202ENSMUST00000109607 3441 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Syne4Q8CII8 Kdm4b-202ENSMUST00000086835 4360 ntAPPRIS ALT2 TSL 5 BASIC14.52□□□□□ -0.08
Syne4Q8CII8 N4bp3-201ENSMUST00000001080 2367 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Syne4Q8CII8 Barhl2-201ENSMUST00000086795 2314 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Syne4Q8CII8 Sympk-201ENSMUST00000023882 4116 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Syne4Q8CII8 Phf8-205ENSMUST00000112668 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.08
Syne4Q8CII8 Pprc1-202ENSMUST00000099392 3956 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
Syne4Q8CII8 Vps25-204ENSMUST00000107280 876 ntTSL 2 BASIC14.52□□□□□ -0.09
Syne4Q8CII8 Msrb3-202ENSMUST00000130950 561 ntTSL 3 BASIC14.52□□□□□ -0.09
Syne4Q8CII8 1700003G13Rik-202ENSMUST00000131342 705 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
Syne4Q8CII8 Slc6a9-209ENSMUST00000163288 2107 ntTSL 5 BASIC14.52□□□□□ -0.09
Syne4Q8CII8 Snrpa-206ENSMUST00000163311 1288 ntAPPRIS P1 TSL 2 BASIC14.52□□□□□ -0.09
Syne4Q8CII8 Krtap20-2-201ENSMUST00000169954 528 ntAPPRIS P1 BASIC14.52□□□□□ -0.09
Syne4Q8CII8 Gm27438-201ENSMUST00000183480 110 ntBASIC14.52□□□□□ -0.09
Syne4Q8CII8 Nr1h2-ps-201ENSMUST00000183844 478 ntBASIC14.52□□□□□ -0.09
Syne4Q8CII8 Gm33222-201ENSMUST00000193725 654 ntTSL 3 BASIC14.52□□□□□ -0.09
Syne4Q8CII8 Gm43298-201ENSMUST00000200887 866 ntTSL 3 BASIC14.52□□□□□ -0.09
Syne4Q8CII8 Gm9555-201ENSMUST00000200908 583 ntBASIC14.52□□□□□ -0.09
Syne4Q8CII8 Rpl17-ps3-201ENSMUST00000221295 556 ntBASIC14.52□□□□□ -0.09
Syne4Q8CII8 AC165260.3-202ENSMUST00000224550 1031 ntBASIC14.52□□□□□ -0.09
Syne4Q8CII8 Nudt7-201ENSMUST00000066514 935 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.09
Syne4Q8CII8 Tomm6os-201ENSMUST00000155812 2944 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
Syne4Q8CII8 Mau2-202ENSMUST00000168013 5323 ntAPPRIS ALT2 TSL 5 BASIC14.52□□□□□ -0.09
Syne4Q8CII8 Hdac7-202ENSMUST00000088402 4223 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.09
Syne4Q8CII8 Lmf1-202ENSMUST00000116641 1858 ntAPPRIS P2 TSL 5 BASIC14.52□□□□□ -0.09
Syne4Q8CII8 Lmf1-201ENSMUST00000063344 1861 ntAPPRIS ALT2 TSL 5 BASIC14.52□□□□□ -0.09
Syne4Q8CII8 Grk4-201ENSMUST00000001112 2408 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Syne4Q8CII8 Trp63-204ENSMUST00000115305 1729 ntAPPRIS ALT1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Syne4Q8CII8 Nek7-201ENSMUST00000027642 3737 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
Syne4Q8CII8 Pde7b-202ENSMUST00000164195 1665 ntAPPRIS ALT2 TSL 5 BASIC14.52□□□□□ -0.09
Syne4Q8CII8 Ppm1g-201ENSMUST00000031032 2307 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Retrieved 100 of 76,532 protein–RNA pairs in 79.1 ms