Protein–RNA interactions for Protein: P35951

Ldlr, Low-density lipoprotein receptor, mousemouse

Predictions only

Length 862 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LdlrP35951 Ppp4r3b-201ENSMUST00000020755 5125 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
LdlrP35951 Ccdc71-201ENSMUST00000061209 3092 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
LdlrP35951 Asap1-218ENSMUST00000177374 4582 ntAPPRIS P3 TSL 1 (best) BASIC12.85□□□□□ -0.35
LdlrP35951 Riok1-201ENSMUST00000021866 2738 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
LdlrP35951 Zfyve28-201ENSMUST00000094868 3983 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
LdlrP35951 Fmo1-201ENSMUST00000046049 2388 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
LdlrP35951 Dync1li1-201ENSMUST00000047404 2601 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
LdlrP35951 Cd200r1-201ENSMUST00000057488 1892 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
LdlrP35951 Kcnt1-211ENSMUST00000171268 3771 ntAPPRIS ALT2 TSL 1 (best) BASIC12.85□□□□□ -0.35
LdlrP35951 Ehbp1l1-201ENSMUST00000049295 6404 ntAPPRIS P4 TSL 1 (best) BASIC12.85□□□□□ -0.35
LdlrP35951 Tssc4-202ENSMUST00000105920 895 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
LdlrP35951 Ypel3-202ENSMUST00000106356 785 ntAPPRIS P1 TSL 5 BASIC12.85□□□□□ -0.35
LdlrP35951 Spcs2-ps-201ENSMUST00000122326 682 ntBASIC12.85□□□□□ -0.35
LdlrP35951 Dhrs2-202ENSMUST00000165432 849 ntAPPRIS P1 TSL 5 BASIC12.85□□□□□ -0.35
LdlrP35951 Tac2-202ENSMUST00000179960 852 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
LdlrP35951 Gm29481-201ENSMUST00000189080 1049 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
LdlrP35951 Gm18307-201ENSMUST00000206864 949 ntBASIC12.85□□□□□ -0.35
LdlrP35951 Slc35d2-202ENSMUST00000220792 917 ntAPPRIS ALT2 TSL 1 (best) BASIC12.85□□□□□ -0.35
LdlrP35951 Tac2-201ENSMUST00000026466 678 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
LdlrP35951 S100a8-201ENSMUST00000069927 486 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
LdlrP35951 CT009757.3-201ENSMUST00000223367 2320 ntBASIC12.85□□□□□ -0.35
LdlrP35951 Mllt6-201ENSMUST00000044730 7274 ntAPPRIS P2 TSL 1 (best) BASIC12.85□□□□□ -0.35
LdlrP35951 Gnai3-201ENSMUST00000000001 3262 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
LdlrP35951 Nacc1-201ENSMUST00000001975 4300 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
LdlrP35951 Cops7b-202ENSMUST00000121534 5383 ntAPPRIS P1 TSL 5 BASIC12.85□□□□□ -0.35
LdlrP35951 Cpeb3-204ENSMUST00000126188 4224 ntAPPRIS ALT2 TSL 1 (best) BASIC12.85□□□□□ -0.35
LdlrP35951 Gm4219-201ENSMUST00000168140 2143 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
LdlrP35951 Fgd6-201ENSMUST00000020208 8044 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
LdlrP35951 Sh3bp4-201ENSMUST00000066279 4995 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
LdlrP35951 Rhobtb1-205ENSMUST00000164034 2421 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
LdlrP35951 Tspan13-201ENSMUST00000020896 1932 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
LdlrP35951 Gm18263-201ENSMUST00000220846 1928 ntBASIC12.84□□□□□ -0.35
LdlrP35951 Parp16-201ENSMUST00000069000 2482 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
LdlrP35951 Fgd2-201ENSMUST00000024810 2612 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
LdlrP35951 Ablim1-202ENSMUST00000099294 6232 ntAPPRIS ALT2 TSL 5 BASIC12.84□□□□□ -0.35
LdlrP35951 Tbx6-202ENSMUST00000172352 1529 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
LdlrP35951 Sbno2-209ENSMUST00000219260 4850 ntAPPRIS P1 TSL 5 BASIC12.84□□□□□ -0.35
LdlrP35951 Pgpep1-201ENSMUST00000070173 4883 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
LdlrP35951 Dab2ip-206ENSMUST00000112987 6287 ntAPPRIS ALT2 TSL 5 BASIC12.84□□□□□ -0.35
LdlrP35951 Cog1-201ENSMUST00000018805 3935 ntAPPRIS P2 TSL 1 (best) BASIC12.84□□□□□ -0.35
LdlrP35951 Bptf-203ENSMUST00000106763 12036 ntAPPRIS ALT2 TSL 5 BASIC12.84□□□□□ -0.35
LdlrP35951 Mir692-1-201ENSMUST00000102263 109 ntBASIC12.84□□□□□ -0.35
LdlrP35951 Trav13d-2-201ENSMUST00000103596 264 ntAPPRIS P1 BASIC12.84□□□□□ -0.35
LdlrP35951 Trav13n-2-201ENSMUST00000103622 264 ntAPPRIS P1 BASIC12.84□□□□□ -0.35
LdlrP35951 Tpd52l2-203ENSMUST00000108799 985 ntTSL 5 BASIC12.84□□□□□ -0.35
LdlrP35951 Mkl2-203ENSMUST00000115809 667 ntTSL 2 BASIC12.84□□□□□ -0.35
LdlrP35951 Gm15376-201ENSMUST00000122258 783 ntBASIC12.84□□□□□ -0.35
LdlrP35951 Tbx3os1-203ENSMUST00000140101 490 ntTSL 3 BASIC12.84□□□□□ -0.35
LdlrP35951 Gm11752-201ENSMUST00000143291 510 ntTSL 2 BASIC12.84□□□□□ -0.35
LdlrP35951 Pigyl-202ENSMUST00000148088 676 ntAPPRIS P1 TSL 2 BASIC12.84□□□□□ -0.35
LdlrP35951 Gm8835-201ENSMUST00000173096 1169 ntBASIC12.84□□□□□ -0.35
LdlrP35951 Gm43094-201ENSMUST00000196549 921 ntBASIC12.84□□□□□ -0.35
LdlrP35951 Gm7446-201ENSMUST00000221035 1240 ntBASIC12.84□□□□□ -0.35
LdlrP35951 AC154276.1-201ENSMUST00000228874 1299 ntBASIC12.84□□□□□ -0.35
LdlrP35951 Lamtor2-201ENSMUST00000029698 668 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
LdlrP35951 Dmkn-201ENSMUST00000041703 662 ntAPPRIS ALT2 TSL 1 (best) BASIC12.84□□□□□ -0.35
LdlrP35951 Scgb3a2-201ENSMUST00000043803 842 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
LdlrP35951 Adamts7-207ENSMUST00000147250 4833 ntAPPRIS ALT2 TSL 1 (best) BASIC12.84□□□□□ -0.35
LdlrP35951 Opn1sw-203ENSMUST00000147483 1426 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
LdlrP35951 Hck-204ENSMUST00000191431 1575 ntAPPRIS P3 TSL 1 (best) BASIC12.84□□□□□ -0.35
LdlrP35951 9230110C19Rik-201ENSMUST00000065291 1592 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
LdlrP35951 Hoxd3os1-202ENSMUST00000139005 1701 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
LdlrP35951 Prrc2b-201ENSMUST00000036691 8612 ntAPPRIS P3 TSL 1 (best) BASIC12.84□□□□□ -0.35
LdlrP35951 Lims1-202ENSMUST00000020078 4327 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
LdlrP35951 Atp6v1h-201ENSMUST00000044369 2049 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
LdlrP35951 Itfg2-201ENSMUST00000001559 2320 ntAPPRIS P2 TSL 1 (best) BASIC12.84□□□□□ -0.35
LdlrP35951 Tbc1d16-201ENSMUST00000036113 6986 ntAPPRIS P3 TSL 1 (best) BASIC12.84□□□□□ -0.35
LdlrP35951 E130308A19Rik-201ENSMUST00000052420 3205 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
LdlrP35951 Wnt7b-201ENSMUST00000023015 3371 ntAPPRIS P3 TSL 1 (best) BASIC12.84□□□□□ -0.35
LdlrP35951 Nrsn2-201ENSMUST00000079278 1455 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
LdlrP35951 Cacna2d1-209ENSMUST00000199704 3861 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
LdlrP35951 Lrfn3-201ENSMUST00000046351 2886 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.35
LdlrP35951 Cpt1c-206ENSMUST00000212836 2716 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.35
LdlrP35951 Etl4-201ENSMUST00000045555 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.35
LdlrP35951 Cyp2b10-201ENSMUST00000005477 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.35
LdlrP35951 Gm26677-201ENSMUST00000180553 1672 ntTSL 5 BASIC12.83□□□□□ -0.35
LdlrP35951 Kcnq1-202ENSMUST00000185383 1535 ntTSL 1 (best) BASIC12.83□□□□□ -0.35
LdlrP35951 Map2k4-201ENSMUST00000046963 3695 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
LdlrP35951 2900097C17Rik-202ENSMUST00000192863 4915 ntBASIC12.83□□□□□ -0.36
LdlrP35951 Tcf4-250ENSMUST00000202458 2610 ntTSL 5 BASIC12.83□□□□□ -0.36
LdlrP35951 Vash2-201ENSMUST00000047409 4032 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
LdlrP35951 Abcd1-202ENSMUST00000114461 2323 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
LdlrP35951 Gm37391-201ENSMUST00000194891 2318 ntBASIC12.83□□□□□ -0.36
LdlrP35951 Pex2-206ENSMUST00000195855 1587 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
LdlrP35951 Dnajc5g-201ENSMUST00000066544 1565 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.36
LdlrP35951 Mnt-201ENSMUST00000000291 4590 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
LdlrP35951 Cyb5rl-201ENSMUST00000030364 2360 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
LdlrP35951 Slc29a1-204ENSMUST00000163492 2216 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.36
LdlrP35951 Gm13226-201ENSMUST00000117838 404 ntBASIC12.83□□□□□ -0.36
LdlrP35951 Rpl9-203ENSMUST00000120094 680 ntAPPRIS P1 TSL 2 BASIC12.83□□□□□ -0.36
LdlrP35951 Gm11400-201ENSMUST00000120853 1214 ntBASIC12.83□□□□□ -0.36
LdlrP35951 Snap47-202ENSMUST00000120940 1192 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
LdlrP35951 Gm21982-201ENSMUST00000146232 3821 ntTSL 2 BASIC12.83□□□□□ -0.36
LdlrP35951 Gm26464-201ENSMUST00000157094 305 ntBASIC12.83□□□□□ -0.36
LdlrP35951 Snhg9-201ENSMUST00000161706 183 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
LdlrP35951 Ly6g6e-203ENSMUST00000172678 750 ntAPPRIS P2 TSL 3 BASIC12.83□□□□□ -0.36
LdlrP35951 Gm21887-201ENSMUST00000178789 441 ntAPPRIS ALT2 TSL 5 BASIC12.83□□□□□ -0.36
LdlrP35951 Gm20753-201ENSMUST00000190105 545 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
LdlrP35951 4930502A04Rik-201ENSMUST00000214059 865 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
LdlrP35951 Ndufs6-201ENSMUST00000022097 568 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Retrieved 100 of 76,532 protein–RNA pairs in 48.3 ms