Protein–RNA interactions for Protein: P18828

Sdc1, Syndecan-1, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc1P18828 Gm36500-201ENSMUST00000221821 1626 ntTSL 5 BASIC10.55□□□□□ -0.72
Sdc1P18828 Sdad1-201ENSMUST00000031364 5020 ntAPPRIS P2 TSL 1 (best) BASIC10.55□□□□□ -0.72
Sdc1P18828 Car7-202ENSMUST00000159416 1943 ntTSL 1 (best) BASIC10.54□□□□□ -0.72
Sdc1P18828 Strc-201ENSMUST00000038389 5756 ntAPPRIS P1 TSL 1 (best) BASIC10.54□□□□□ -0.72
Sdc1P18828 Sstr3-201ENSMUST00000053239 3928 ntAPPRIS P1 TSL 1 (best) BASIC10.54□□□□□ -0.72
Sdc1P18828 Adamts16-202ENSMUST00000109694 3378 ntTSL 1 (best) BASIC10.54□□□□□ -0.72
Sdc1P18828 Zmat1-202ENSMUST00000113185 3378 ntAPPRIS ALT2 TSL 5 BASIC10.54□□□□□ -0.72
Sdc1P18828 Upk3b-201ENSMUST00000062606 3530 ntAPPRIS P1 TSL 1 (best) BASIC10.54□□□□□ -0.72
Sdc1P18828 Fads6-201ENSMUST00000056153 4951 ntAPPRIS P1 TSL 1 (best) BASIC10.54□□□□□ -0.72
Sdc1P18828 Mroh1-201ENSMUST00000092595 5111 ntAPPRIS ALT2 TSL 1 (best) BASIC10.54□□□□□ -0.72
Sdc1P18828 Atl3-202ENSMUST00000170373 6474 ntAPPRIS ALT2 TSL 5 BASIC10.54□□□□□ -0.72
Sdc1P18828 Plekha5-201ENSMUST00000087622 7382 ntAPPRIS P1 TSL 5 BASIC10.54□□□□□ -0.72
Sdc1P18828 Gm45897-201ENSMUST00000212679 1998 ntTSL 5 BASIC10.54□□□□□ -0.72
Sdc1P18828 Fyttd1-201ENSMUST00000023489 4312 ntAPPRIS P1 TSL 1 (best) BASIC10.54□□□□□ -0.72
Sdc1P18828 Pcdha2-202ENSMUST00000195590 4645 ntAPPRIS ALT2 TSL 1 (best) BASIC10.54□□□□□ -0.72
Sdc1P18828 Mrpl45-201ENSMUST00000019026 2431 ntAPPRIS P1 TSL 1 (best) BASIC10.54□□□□□ -0.72
Sdc1P18828 Acad8-201ENSMUST00000060513 2859 ntAPPRIS P2 TSL 1 (best) BASIC10.54□□□□□ -0.72
Sdc1P18828 Neat1-202ENSMUST00000174287 3004 ntTSL 1 (best) BASIC10.54□□□□□ -0.72
Sdc1P18828 Bcar3-201ENSMUST00000029766 3311 ntAPPRIS P1 TSL 1 (best) BASIC10.54□□□□□ -0.72
Sdc1P18828 Park7-205ENSMUST00000105676 582 ntTSL 5 BASIC10.54□□□□□ -0.72
Sdc1P18828 Fbxo44-202ENSMUST00000105705 1034 ntTSL 2 BASIC10.54□□□□□ -0.72
Sdc1P18828 Ndufb11-201ENSMUST00000116621 908 ntAPPRIS P1 TSL 1 (best) BASIC10.54□□□□□ -0.72
Sdc1P18828 Ftl2-ps-201ENSMUST00000118517 552 ntBASIC10.54□□□□□ -0.72
Sdc1P18828 Sec22b-202ENSMUST00000122288 1177 ntTSL 1 (best) BASIC10.54□□□□□ -0.72
Sdc1P18828 Gm15701-201ENSMUST00000129559 573 ntTSL 3 BASIC10.54□□□□□ -0.72
Sdc1P18828 Rasl2-9-201ENSMUST00000147835 1013 ntAPPRIS P1 BASIC10.54□□□□□ -0.72
Sdc1P18828 Gm5859-201ENSMUST00000165401 2324 ntBASIC10.54□□□□□ -0.72
Sdc1P18828 Csrp3-202ENSMUST00000167786 899 ntAPPRIS P1 TSL 1 (best) BASIC10.54□□□□□ -0.72
Sdc1P18828 Rpsa-ps1-201ENSMUST00000191040 886 ntBASIC10.54□□□□□ -0.72
Sdc1P18828 Tmem129-204ENSMUST00000200849 657 ntTSL 3 BASIC10.54□□□□□ -0.72
Sdc1P18828 Krtcap3-208ENSMUST00000201937 889 ntAPPRIS P1 TSL 5 BASIC10.54□□□□□ -0.72
Sdc1P18828 Gm35960-201ENSMUST00000202712 767 ntBASIC10.54□□□□□ -0.72
Sdc1P18828 Gm40377-201ENSMUST00000204604 2015 ntBASIC10.54□□□□□ -0.72
Sdc1P18828 Gm45669-201ENSMUST00000209808 459 ntTSL 1 (best) BASIC10.54□□□□□ -0.72
Sdc1P18828 AC166341.4-201ENSMUST00000220625 123 ntBASIC10.54□□□□□ -0.72
Sdc1P18828 AC169036.1-201ENSMUST00000227994 296 ntBASIC10.54□□□□□ -0.72
Sdc1P18828 AC154806.6-201ENSMUST00000228192 202 ntBASIC10.54□□□□□ -0.72
Sdc1P18828 Mrpl27-201ENSMUST00000025278 756 ntAPPRIS P1 TSL 1 (best) BASIC10.54□□□□□ -0.72
Sdc1P18828 Rnf113a1-201ENSMUST00000046433 1223 ntAPPRIS P1 BASIC10.54□□□□□ -0.72
Sdc1P18828 Pcdhga3-201ENSMUST00000073447 4720 ntAPPRIS P1 TSL 1 (best) BASIC10.54□□□□□ -0.72
Sdc1P18828 Cox6b1-201ENSMUST00000075738 618 ntAPPRIS P1 TSL 1 (best) BASIC10.54□□□□□ -0.72
Sdc1P18828 Gm15590-201ENSMUST00000078419 552 ntBASIC10.54□□□□□ -0.72
Sdc1P18828 Pdyn-201ENSMUST00000028883 2386 ntAPPRIS P1 TSL 1 (best) BASIC10.54□□□□□ -0.72
Sdc1P18828 Plxdc2-203ENSMUST00000114703 2061 ntTSL 5 BASIC10.54□□□□□ -0.72
Sdc1P18828 Sun2-203ENSMUST00000100439 3768 ntAPPRIS ALT2 TSL 1 (best) BASIC10.54□□□□□ -0.72
Sdc1P18828 Atad2-201ENSMUST00000038194 5684 ntAPPRIS P2 TSL 5 BASIC10.54□□□□□ -0.72
Sdc1P18828 Grm1-201ENSMUST00000044306 6930 ntAPPRIS P3 TSL 1 (best) BASIC10.54□□□□□ -0.72
Sdc1P18828 Trim55-201ENSMUST00000029139 2595 ntAPPRIS P1 TSL 2 BASIC10.54□□□□□ -0.72
Sdc1P18828 Ppp3cb-202ENSMUST00000159027 3831 ntAPPRIS P3 TSL 1 (best) BASIC10.54□□□□□ -0.72
Sdc1P18828 Acvr1c-201ENSMUST00000028178 9162 ntAPPRIS P2 TSL 1 (best) BASIC10.54□□□□□ -0.72
Sdc1P18828 Gm39822-201ENSMUST00000212253 2284 ntTSL 5 BASIC10.54□□□□□ -0.72
Sdc1P18828 Kirrel2-201ENSMUST00000045817 3352 ntAPPRIS P1 TSL 1 (best) BASIC10.54□□□□□ -0.72
Sdc1P18828 Cacna1g-210ENSMUST00000107792 7981 ntAPPRIS ALT2 TSL 5 BASIC10.54□□□□□ -0.72
Sdc1P18828 Hbs1l-201ENSMUST00000020153 2793 ntAPPRIS ALT2 TSL 1 (best) BASIC10.54□□□□□ -0.72
Sdc1P18828 Olfr140-202ENSMUST00000111506 3449 ntAPPRIS P1 TSL 2 BASIC10.54□□□□□ -0.72
Sdc1P18828 Camk2b-206ENSMUST00000101585 1650 ntTSL 5 BASIC10.53□□□□□ -0.72
Sdc1P18828 Psrc1-201ENSMUST00000090561 1686 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
Sdc1P18828 Tspan14-201ENSMUST00000047652 2475 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
Sdc1P18828 Fyb2-201ENSMUST00000106803 3136 ntAPPRIS P2 TSL 1 (best) BASIC10.53□□□□□ -0.72
Sdc1P18828 Plekha2-204ENSMUST00000128715 3463 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
Sdc1P18828 Pkib-203ENSMUST00000095668 3311 ntTSL 1 (best) BASIC10.53□□□□□ -0.72
Sdc1P18828 Setd1a-201ENSMUST00000047075 6487 ntAPPRIS P1 TSL 5 BASIC10.53□□□□□ -0.72
Sdc1P18828 Gjb5-201ENSMUST00000046498 1721 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
Sdc1P18828 Gm38187-201ENSMUST00000195609 4709 ntBASIC10.53□□□□□ -0.72
Sdc1P18828 Cdk10-212ENSMUST00000213005 1580 ntTSL 1 (best) BASIC10.53□□□□□ -0.72
Sdc1P18828 Rbm39-217ENSMUST00000146297 2580 ntAPPRIS ALT1 TSL 1 (best) BASIC10.53□□□□□ -0.72
Sdc1P18828 Dis3l-208ENSMUST00000168844 3575 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
Sdc1P18828 2610037D02Rik-201ENSMUST00000180852 2449 ntTSL 1 (best) BASIC10.53□□□□□ -0.72
Sdc1P18828 Ugt1a6a-201ENSMUST00000014263 2265 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
Sdc1P18828 Foxo6os-201ENSMUST00000152384 2291 ntTSL 1 (best) BASIC10.53□□□□□ -0.72
Sdc1P18828 Mixl1-201ENSMUST00000027778 2294 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
Sdc1P18828 Gm26735-201ENSMUST00000180992 2649 ntTSL 5 BASIC10.53□□□□□ -0.72
Sdc1P18828 Gm2810-201ENSMUST00000118681 990 ntBASIC10.53□□□□□ -0.72
Sdc1P18828 Slc7a10-203ENSMUST00000135452 629 ntTSL 1 (best) BASIC10.53□□□□□ -0.72
Sdc1P18828 Gm13431-203ENSMUST00000147012 388 ntTSL 2 BASIC10.53□□□□□ -0.72
Sdc1P18828 Gm11723-201ENSMUST00000155505 466 ntTSL 3 BASIC10.53□□□□□ -0.72
Sdc1P18828 Egfl8-201ENSMUST00000015611 1150 ntAPPRIS P2 TSL 1 (best) BASIC10.53□□□□□ -0.72
Sdc1P18828 Gm17092-201ENSMUST00000166606 698 ntTSL 2 BASIC10.53□□□□□ -0.72
Sdc1P18828 Ly6f-202ENSMUST00000189654 818 ntAPPRIS P1 TSL 2 BASIC10.53□□□□□ -0.72
Sdc1P18828 Pcdhgb5-201ENSMUST00000192535 4670 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
Sdc1P18828 Gm6916-202ENSMUST00000205523 195 ntBASIC10.53□□□□□ -0.72
Sdc1P18828 Tmem86b-201ENSMUST00000055085 1222 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
Sdc1P18828 Egfl8-202ENSMUST00000097345 1064 ntAPPRIS ALT2 TSL 1 (best) BASIC10.53□□□□□ -0.72
Sdc1P18828 Atp6v0a1-201ENSMUST00000044721 4008 ntAPPRIS P2 TSL 1 (best) BASIC10.53□□□□□ -0.72
Sdc1P18828 Smtn-204ENSMUST00000110011 3020 ntAPPRIS ALT2 TSL 5 BASIC10.53□□□□□ -0.72
Sdc1P18828 Hk3-203ENSMUST00000126234 3032 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
Sdc1P18828 Syvn1-207ENSMUST00000156550 3363 ntAPPRIS ALT2 TSL 5 BASIC10.53□□□□□ -0.72
Sdc1P18828 Lrrn1-201ENSMUST00000049285 3700 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
Sdc1P18828 Kalrn-201ENSMUST00000076810 8940 ntAPPRIS P1 TSL 5 BASIC10.53□□□□□ -0.72
Sdc1P18828 Pex1-201ENSMUST00000006061 4433 ntAPPRIS P3 TSL 1 (best) BASIC10.53□□□□□ -0.72
Sdc1P18828 Ccdc71-201ENSMUST00000061209 3092 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
Sdc1P18828 Olfr61-202ENSMUST00000210241 1348 ntAPPRIS P1 TSL 5 BASIC10.53□□□□□ -0.72
Sdc1P18828 Chtop-201ENSMUST00000001043 3257 ntTSL 1 (best) BASIC10.53□□□□□ -0.72
Sdc1P18828 Vps33b-201ENSMUST00000032749 2574 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
Sdc1P18828 Gm8617-201ENSMUST00000118796 2222 ntBASIC10.53□□□□□ -0.72
Sdc1P18828 Tfdp2-204ENSMUST00000179065 2213 ntTSL 1 (best) BASIC10.53□□□□□ -0.72
Sdc1P18828 Dbx2-201ENSMUST00000054244 3460 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
Sdc1P18828 Git2-202ENSMUST00000086564 2984 ntAPPRIS P1 TSL 5 BASIC10.53□□□□□ -0.72
Sdc1P18828 Gm15222-202ENSMUST00000228667 1726 ntBASIC10.53□□□□□ -0.72
Sdc1P18828 Cyb561d1-203ENSMUST00000106655 4275 ntAPPRIS P4 TSL 1 (best) BASIC10.53□□□□□ -0.72
Retrieved 100 of 76,532 protein–RNA pairs in 31.8 ms