Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 Arhgef37-201ENSMUST00000171629 3234 ntAPPRIS P1 TSL 5 BASIC12.62□□□□□ -0.39
Chd3B1AR17 Wnt9a-201ENSMUST00000000128 3320 ntAPPRIS ALT2 TSL 5 BASIC12.62□□□□□ -0.39
Chd3B1AR17 Kcnk13-201ENSMUST00000049788 3078 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Chd3B1AR17 Lancl1-202ENSMUST00000113979 4461 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Chd3B1AR17 Sall4-202ENSMUST00000075044 2534 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Chd3B1AR17 Fhod3-201ENSMUST00000037097 5408 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Chd3B1AR17 Nek3-202ENSMUST00000110730 2050 ntAPPRIS ALT2 TSL 5 BASIC12.62□□□□□ -0.39
Chd3B1AR17 Cdk5rap3-201ENSMUST00000103152 2250 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Chd3B1AR17 Clcn6-201ENSMUST00000030879 3306 ntAPPRIS P2 TSL 1 (best) BASIC12.62□□□□□ -0.39
Chd3B1AR17 Dnmt3l-205ENSMUST00000138785 1822 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Chd3B1AR17 Skp2-203ENSMUST00000190131 1819 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Chd3B1AR17 Cand2-201ENSMUST00000075995 5474 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Chd3B1AR17 Pdcd1-201ENSMUST00000027507 1930 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Chd3B1AR17 Gm38577-201ENSMUST00000221531 4545 ntBASIC12.62□□□□□ -0.39
Chd3B1AR17 Fbxo28-201ENSMUST00000051431 4925 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Chd3B1AR17 D930019O06Rik-201ENSMUST00000181841 3663 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Chd3B1AR17 Sept10-201ENSMUST00000165971 2532 ntAPPRIS P2 TSL 1 (best) BASIC12.62□□□□□ -0.39
Chd3B1AR17 Slc6a20a-201ENSMUST00000040960 2732 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Chd3B1AR17 Zfand4-202ENSMUST00000112900 3220 ntAPPRIS ALT2 TSL 5 BASIC12.62□□□□□ -0.39
Chd3B1AR17 Nek1-202ENSMUST00000120689 5478 ntAPPRIS ALT2 TSL 1 (best) BASIC12.62□□□□□ -0.39
Chd3B1AR17 Inca1-203ENSMUST00000108542 1080 ntAPPRIS P3 TSL 1 (best) BASIC12.61□□□□□ -0.39
Chd3B1AR17 Gm15501-201ENSMUST00000133910 849 ntTSL 3 BASIC12.61□□□□□ -0.39
Chd3B1AR17 Gm28379-201ENSMUST00000186450 554 ntTSL 5 BASIC12.61□□□□□ -0.39
Chd3B1AR17 Gm8227-201ENSMUST00000223306 571 ntBASIC12.61□□□□□ -0.39
Chd3B1AR17 Pcgf5-203ENSMUST00000224679 1269 ntAPPRIS P5 BASIC12.61□□□□□ -0.39
Chd3B1AR17 Cts7-204ENSMUST00000225321 1257 ntBASIC12.61□□□□□ -0.39
Chd3B1AR17 Cryga-201ENSMUST00000061497 625 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Chd3B1AR17 H2-T22-203ENSMUST00000080015 1761 ntAPPRIS P3 TSL 1 (best) BASIC12.61□□□□□ -0.39
Chd3B1AR17 Dnaaf2-201ENSMUST00000021356 3390 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Chd3B1AR17 Psd2-206ENSMUST00000177432 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
Chd3B1AR17 Nid1-201ENSMUST00000005532 6091 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Chd3B1AR17 Gna13-201ENSMUST00000020930 6160 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Chd3B1AR17 Afap1l1-201ENSMUST00000120472 3444 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Chd3B1AR17 Shisa9-202ENSMUST00000170672 3421 ntAPPRIS P4 TSL 1 (best) BASIC12.61□□□□□ -0.39
Chd3B1AR17 Pak4-201ENSMUST00000032823 2611 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Chd3B1AR17 Ankrd10-202ENSMUST00000169782 5156 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Chd3B1AR17 Tubb2a-201ENSMUST00000056427 1610 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Chd3B1AR17 Kpna7-203ENSMUST00000116454 1500 ntAPPRIS P3 TSL 1 (best) BASIC12.61□□□□□ -0.39
Chd3B1AR17 Stx17-201ENSMUST00000064765 1531 ntAPPRIS P1 TSL 5 BASIC12.61□□□□□ -0.39
Chd3B1AR17 Gnas-204ENSMUST00000087877 3947 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Chd3B1AR17 Cutal-201ENSMUST00000028228 2179 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Chd3B1AR17 Ackr4-204ENSMUST00000219146 1654 ntAPPRIS P1 TSL 5 BASIC12.61□□□□□ -0.39
Chd3B1AR17 4933424N20Rik-201ENSMUST00000200749 1463 ntBASIC12.61□□□□□ -0.39
Chd3B1AR17 Endou-201ENSMUST00000023105 2404 ntAPPRIS P3 TSL 1 (best) BASIC12.61□□□□□ -0.39
Chd3B1AR17 Capn9-201ENSMUST00000093033 2330 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Chd3B1AR17 Gm12678-201ENSMUST00000154177 692 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Chd3B1AR17 Bloc1s2-ps-201ENSMUST00000183232 432 ntBASIC12.61□□□□□ -0.39
Chd3B1AR17 Txndc17-201ENSMUST00000021158 981 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Chd3B1AR17 1700023F06Rik-201ENSMUST00000021323 1199 ntAPPRIS P2 TSL 5 BASIC12.61□□□□□ -0.39
Chd3B1AR17 Lypd2-201ENSMUST00000023260 513 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Chd3B1AR17 Mea1-201ENSMUST00000002845 840 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Chd3B1AR17 Asb8-201ENSMUST00000059112 1049 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Chd3B1AR17 Cryba4-201ENSMUST00000086629 746 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Chd3B1AR17 Cbx3-ps1-201ENSMUST00000091539 545 ntBASIC12.61□□□□□ -0.39
Chd3B1AR17 Atg4d-201ENSMUST00000065005 5951 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Chd3B1AR17 Cd80-201ENSMUST00000099816 1701 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Chd3B1AR17 Nol10-201ENSMUST00000046011 3021 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Chd3B1AR17 Kif21a-203ENSMUST00000100304 6439 ntAPPRIS ALT2 TSL 5 BASIC12.61□□□□□ -0.39
Chd3B1AR17 Kif21a-202ENSMUST00000088614 6439 ntAPPRIS ALT2 TSL 5 BASIC12.61□□□□□ -0.39
Chd3B1AR17 Fgd4-211ENSMUST00000162671 2714 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Chd3B1AR17 Gmppb-201ENSMUST00000047947 1429 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Chd3B1AR17 St8sia2-201ENSMUST00000026896 5368 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Chd3B1AR17 Bud13-201ENSMUST00000074957 2539 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Chd3B1AR17 Zer1-202ENSMUST00000113677 4189 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Chd3B1AR17 Olfr718-ps1-202ENSMUST00000213631 4737 ntAPPRIS P5 TSL 5 BASIC12.61□□□□□ -0.39
Chd3B1AR17 D230025D16Rik-201ENSMUST00000034361 2916 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Chd3B1AR17 Ak4-201ENSMUST00000102780 4186 ntAPPRIS P1 TSL 5 BASIC12.6□□□□□ -0.39
Chd3B1AR17 Ppm1b-204ENSMUST00000112307 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
Chd3B1AR17 Gm36356-201ENSMUST00000209224 2277 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Chd3B1AR17 Socs5-201ENSMUST00000041369 4392 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Chd3B1AR17 Gm23270-201ENSMUST00000104055 131 ntBASIC12.6□□□□□ -0.39
Chd3B1AR17 Gm15479-201ENSMUST00000139309 1133 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Chd3B1AR17 Gm12714-201ENSMUST00000143391 669 ntTSL 3 BASIC12.6□□□□□ -0.39
Chd3B1AR17 Gm7008-202ENSMUST00000170019 402 ntTSL 2 BASIC12.6□□□□□ -0.39
Chd3B1AR17 Gm26636-201ENSMUST00000181696 1115 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Chd3B1AR17 Gm21769-201ENSMUST00000211922 111 ntBASIC12.6□□□□□ -0.39
Chd3B1AR17 Tatdn3-201ENSMUST00000027945 1196 ntAPPRIS ALT2 TSL 3 BASIC12.6□□□□□ -0.39
Chd3B1AR17 Tmem247-201ENSMUST00000042172 752 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Chd3B1AR17 Olfr368-201ENSMUST00000053990 985 ntAPPRIS P1 BASIC12.6□□□□□ -0.39
Chd3B1AR17 Nrf1-207ENSMUST00000115206 1879 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Chd3B1AR17 Gpr26-201ENSMUST00000045840 11571 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Chd3B1AR17 Kifc3-202ENSMUST00000169353 2898 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
Chd3B1AR17 Ildr1-202ENSMUST00000089618 2850 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
Chd3B1AR17 2900069G24Rik-201ENSMUST00000192780 1311 ntBASIC12.6□□□□□ -0.39
Chd3B1AR17 Il1r1-202ENSMUST00000114795 4832 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
Chd3B1AR17 Crybg1-202ENSMUST00000200401 7525 ntAPPRIS ALT2 TSL 5 BASIC12.6□□□□□ -0.39
Chd3B1AR17 Zfp64-203ENSMUST00000109162 2848 ntAPPRIS P1 TSL 2 BASIC12.6□□□□□ -0.39
Chd3B1AR17 Abtb2-201ENSMUST00000076212 4558 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Chd3B1AR17 Naaladl1-201ENSMUST00000044451 2491 ntAPPRIS P1 TSL 2 BASIC12.6□□□□□ -0.39
Chd3B1AR17 Aacs-201ENSMUST00000031445 3239 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Chd3B1AR17 Gm13293-201ENSMUST00000131188 1615 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Chd3B1AR17 Rnf14-202ENSMUST00000170811 2886 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Chd3B1AR17 Wdr53-201ENSMUST00000023474 1394 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Chd3B1AR17 Adam22-203ENSMUST00000088744 9245 ntAPPRIS ALT2 TSL 5 BASIC12.6□□□□□ -0.39
Chd3B1AR17 Rhot1-204ENSMUST00000092857 3687 ntAPPRIS P3 TSL 1 (best) BASIC12.6□□□□□ -0.39
Chd3B1AR17 Ccp110-202ENSMUST00000106557 5073 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Chd3B1AR17 Ncaph-201ENSMUST00000110387 2695 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Chd3B1AR17 Thoc6-203ENSMUST00000115489 1083 ntTSL 5 BASIC12.6□□□□□ -0.39
Chd3B1AR17 Lamtor2-202ENSMUST00000119002 568 ntTSL 2 BASIC12.6□□□□□ -0.39
Chd3B1AR17 Igfbp2-202ENSMUST00000120564 991 ntTSL 3 BASIC12.6□□□□□ -0.39
Retrieved 100 of 76,532 protein–RNA pairs in 33.1 ms