Protein–RNA interactions for Protein: Q9CYB0

Trim13, E3 ubiquitin-protein ligase TRIM13, mousemouse

Predictions only

Length 407 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim13Q9CYB0 Preb-201ENSMUST00000074840 6300 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
Trim13Q9CYB0 Ccdc106-201ENSMUST00000045543 1534 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
Trim13Q9CYB0 Clpx-202ENSMUST00000113824 2809 ntTSL 1 (best) BASIC11.96□□□□□ -0.5
Trim13Q9CYB0 Ncoa6-203ENSMUST00000109670 7101 ntAPPRIS P2 TSL 5 BASIC11.96□□□□□ -0.5
Trim13Q9CYB0 Rad9b-202ENSMUST00000117263 2371 ntTSL 1 (best) BASIC11.96□□□□□ -0.5
Trim13Q9CYB0 Setx-201ENSMUST00000061578 10970 ntAPPRIS P1 TSL 5 BASIC11.96□□□□□ -0.5
Trim13Q9CYB0 Gm42706-201ENSMUST00000199733 1910 ntBASIC11.96□□□□□ -0.5
Trim13Q9CYB0 Slc29a1-203ENSMUST00000097317 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC11.96□□□□□ -0.5
Trim13Q9CYB0 Rapgef2-206ENSMUST00000195708 6964 ntAPPRIS P1 TSL 5 BASIC11.95□□□□□ -0.5
Trim13Q9CYB0 Synpo-211ENSMUST00000155195 4442 ntAPPRIS ALT2 TSL 1 (best) BASIC11.95□□□□□ -0.5
Trim13Q9CYB0 Gsdma3-201ENSMUST00000073295 1477 ntAPPRIS P2 TSL 1 (best) BASIC11.95□□□□□ -0.5
Trim13Q9CYB0 Syt6-203ENSMUST00000118117 1856 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
Trim13Q9CYB0 Gm37269-201ENSMUST00000193906 1891 ntBASIC11.95□□□□□ -0.5
Trim13Q9CYB0 Col18a1-203ENSMUST00000105409 4791 ntAPPRIS P2 TSL 1 (best) BASIC11.95□□□□□ -0.5
Trim13Q9CYB0 Pcdhga3-201ENSMUST00000073447 4720 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Trim13Q9CYB0 Zfp12-203ENSMUST00000077485 4294 ntAPPRIS P3 TSL 1 (best) BASIC11.95□□□□□ -0.5
Trim13Q9CYB0 Trp53-202ENSMUST00000108657 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC11.95□□□□□ -0.5
Trim13Q9CYB0 Csrnp3-202ENSMUST00000112394 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC11.95□□□□□ -0.5
Trim13Q9CYB0 Apol7e-201ENSMUST00000096358 2227 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Trim13Q9CYB0 B230217C12Rik-202ENSMUST00000155954 2181 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
Trim13Q9CYB0 Myo7a-204ENSMUST00000107128 7506 ntAPPRIS ALT2 TSL 5 BASIC11.95□□□□□ -0.5
Trim13Q9CYB0 Myo9b-202ENSMUST00000168839 7102 ntAPPRIS ALT2 TSL 5 BASIC11.95□□□□□ -0.5
Trim13Q9CYB0 Hk2-201ENSMUST00000000642 5513 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Trim13Q9CYB0 Nfkb2-202ENSMUST00000111881 3205 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Trim13Q9CYB0 Ppp1r1a-201ENSMUST00000023133 1306 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Trim13Q9CYB0 Atat1-203ENSMUST00000077494 1340 ntAPPRIS ALT2 TSL 1 (best) BASIC11.95□□□□□ -0.5
Trim13Q9CYB0 Calcoco1-201ENSMUST00000023818 2822 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Trim13Q9CYB0 Vps36-201ENSMUST00000033866 3574 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Trim13Q9CYB0 Scube2-201ENSMUST00000007423 3571 ntTSL 2 BASIC11.95□□□□□ -0.5
Trim13Q9CYB0 Mrps26-202ENSMUST00000145614 4278 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Trim13Q9CYB0 Mki67-201ENSMUST00000033310 10061 ntAPPRIS P1 TSL 5 BASIC11.95□□□□□ -0.5
Trim13Q9CYB0 Ndc1-204ENSMUST00000139560 4584 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Trim13Q9CYB0 Syvn1-204ENSMUST00000138532 3464 ntAPPRIS P2 TSL 1 (best) BASIC11.95□□□□□ -0.5
Trim13Q9CYB0 Coasy-202ENSMUST00000107308 2386 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Trim13Q9CYB0 Tspan5-203ENSMUST00000121826 1114 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
Trim13Q9CYB0 Gm13383-201ENSMUST00000131190 1171 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
Trim13Q9CYB0 Ntpcr-205ENSMUST00000143504 520 ntTSL 5 BASIC11.95□□□□□ -0.5
Trim13Q9CYB0 Gm15851-201ENSMUST00000160564 662 ntTSL 3 BASIC11.95□□□□□ -0.5
Trim13Q9CYB0 Gm10044-204ENSMUST00000170177 659 ntTSL 3 BASIC11.95□□□□□ -0.5
Trim13Q9CYB0 Calhm3-201ENSMUST00000178630 1044 ntAPPRIS P1 TSL 5 BASIC11.95□□□□□ -0.5
Trim13Q9CYB0 Selenoh-205ENSMUST00000189636 499 ntAPPRIS ALT2 TSL 3 BASIC11.95□□□□□ -0.5
Trim13Q9CYB0 Fmc1-201ENSMUST00000019833 479 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Trim13Q9CYB0 Gm44344-201ENSMUST00000200287 129 ntBASIC11.95□□□□□ -0.5
Trim13Q9CYB0 Gm15411-202ENSMUST00000201913 668 ntTSL 3 BASIC11.95□□□□□ -0.5
Trim13Q9CYB0 5430431A17Rik-201ENSMUST00000206342 795 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
Trim13Q9CYB0 Gm44872-201ENSMUST00000207864 420 ntBASIC11.95□□□□□ -0.5
Trim13Q9CYB0 Npb-201ENSMUST00000061309 418 ntTSL 3 BASIC11.95□□□□□ -0.5
Trim13Q9CYB0 Cyhr1-201ENSMUST00000066677 1163 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
Trim13Q9CYB0 Plekha1-202ENSMUST00000075181 2301 ntAPPRIS P2 TSL 1 (best) BASIC11.95□□□□□ -0.5
Trim13Q9CYB0 Acly-201ENSMUST00000007131 4393 ntAPPRIS P3 TSL 1 (best) BASIC11.95□□□□□ -0.5
Trim13Q9CYB0 Arhgap22-202ENSMUST00000111956 2596 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Trim13Q9CYB0 Itga4-201ENSMUST00000099972 9767 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Trim13Q9CYB0 Smarcd2-203ENSMUST00000106843 2548 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
Trim13Q9CYB0 Chd5-201ENSMUST00000005175 9122 ntAPPRIS ALT2 TSL 5 BASIC11.95□□□□□ -0.5
Trim13Q9CYB0 Sipa1l3-207ENSMUST00000182484 2420 ntTSL 5 BASIC11.95□□□□□ -0.5
Trim13Q9CYB0 4933406P04Rik-201ENSMUST00000092680 1789 ntBASIC11.95□□□□□ -0.5
Trim13Q9CYB0 Ckm-203ENSMUST00000208710 2742 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Trim13Q9CYB0 Rbm11-203ENSMUST00000114253 2699 ntAPPRIS P2 TSL 1 (best) BASIC11.94□□□□□ -0.5
Trim13Q9CYB0 Abcb6-201ENSMUST00000027396 2966 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Trim13Q9CYB0 Sox7-201ENSMUST00000079652 3299 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Trim13Q9CYB0 Pbrm1-207ENSMUST00000112095 7907 ntTSL 5 BASIC11.94□□□□□ -0.5
Trim13Q9CYB0 Rabep1-203ENSMUST00000100928 3860 ntTSL 5 BASIC11.94□□□□□ -0.5
Trim13Q9CYB0 Jph2-202ENSMUST00000109425 4155 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Trim13Q9CYB0 Dnmt1-201ENSMUST00000004202 5367 ntAPPRIS P4 TSL 1 (best) BASIC11.94□□□□□ -0.5
Trim13Q9CYB0 Dnajc30-201ENSMUST00000071263 1661 ntAPPRIS P1 BASIC11.94□□□□□ -0.5
Trim13Q9CYB0 Tufm-201ENSMUST00000098048 1679 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Trim13Q9CYB0 F830212C03Rik-201ENSMUST00000191701 2285 ntBASIC11.94□□□□□ -0.5
Trim13Q9CYB0 Gm42416-201ENSMUST00000115661 2856 ntAPPRIS P1 TSL 2 BASIC11.94□□□□□ -0.5
Trim13Q9CYB0 Ttpa-203ENSMUST00000121491 2862 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
Trim13Q9CYB0 Ccdc25-201ENSMUST00000022614 2230 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Trim13Q9CYB0 Art3-208ENSMUST00000121096 1600 ntAPPRIS ALT2 TSL 1 (best) BASIC11.94□□□□□ -0.5
Trim13Q9CYB0 Usp17le-201ENSMUST00000053464 1626 ntTSL 5 BASIC11.94□□□□□ -0.5
Trim13Q9CYB0 Tmem201-203ENSMUST00000105687 3697 ntAPPRIS ALT2 TSL 1 (best) BASIC11.94□□□□□ -0.5
Trim13Q9CYB0 Pdp1-203ENSMUST00000108297 4201 ntAPPRIS P3 TSL 1 (best) BASIC11.94□□□□□ -0.5
Trim13Q9CYB0 Abhd18-202ENSMUST00000108078 2492 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Trim13Q9CYB0 Necap1-201ENSMUST00000032477 2476 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Trim13Q9CYB0 Atp13a1-201ENSMUST00000034326 3915 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Trim13Q9CYB0 Chodl-203ENSMUST00000114216 1550 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
Trim13Q9CYB0 Myo16-201ENSMUST00000042103 6725 ntAPPRIS ALT2 TSL 5 BASIC11.94□□□□□ -0.5
Trim13Q9CYB0 Gm43321-201ENSMUST00000198897 2409 ntBASIC11.94□□□□□ -0.5
Trim13Q9CYB0 Ric3-201ENSMUST00000055993 5281 ntAPPRIS P3 TSL 1 (best) BASIC11.94□□□□□ -0.5
Trim13Q9CYB0 Tnnc2-201ENSMUST00000103095 700 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Trim13Q9CYB0 Tomm5-204ENSMUST00000107810 639 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Trim13Q9CYB0 Cox16-202ENSMUST00000110340 668 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
Trim13Q9CYB0 Gm6161-201ENSMUST00000121942 1102 ntBASIC11.94□□□□□ -0.5
Trim13Q9CYB0 1700042O10Rik-201ENSMUST00000151032 1075 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
Trim13Q9CYB0 Hnrnpa3-207ENSMUST00000164947 1074 ntAPPRIS ALT2 TSL 5 BASIC11.94□□□□□ -0.5
Trim13Q9CYB0 Gm6254-201ENSMUST00000168178 1072 ntBASIC11.94□□□□□ -0.5
Trim13Q9CYB0 Gm6153-201ENSMUST00000172004 1058 ntBASIC11.94□□□□□ -0.5
Trim13Q9CYB0 Skiv2l-ps1-201ENSMUST00000173935 658 ntBASIC11.94□□□□□ -0.5
Trim13Q9CYB0 Gm22175-201ENSMUST00000175007 78 ntBASIC11.94□□□□□ -0.5
Trim13Q9CYB0 Gm9242-201ENSMUST00000177820 1074 ntAPPRIS P1 BASIC11.94□□□□□ -0.5
Trim13Q9CYB0 Mir6956-201ENSMUST00000183598 62 ntBASIC11.94□□□□□ -0.5
Trim13Q9CYB0 Gm5641-202ENSMUST00000198699 1080 ntBASIC11.94□□□□□ -0.5
Trim13Q9CYB0 3830422I06Rik-201ENSMUST00000200199 1181 ntBASIC11.94□□□□□ -0.5
Trim13Q9CYB0 Gm30191-201ENSMUST00000205501 647 ntAPPRIS P1 TSL 5 BASIC11.94□□□□□ -0.5
Trim13Q9CYB0 AC073947.1-201ENSMUST00000216991 649 ntBASIC11.94□□□□□ -0.5
Trim13Q9CYB0 Ccdc88c-204ENSMUST00000223097 1253 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
Trim13Q9CYB0 CT573086.1-201ENSMUST00000227202 1074 ntBASIC11.94□□□□□ -0.5
Trim13Q9CYB0 Lce1d-201ENSMUST00000029524 678 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Retrieved 100 of 76,532 protein–RNA pairs in 45 ms