Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Aif1-206ENSMUST00000173324 875 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Ushbp1Q8R370 Gm7584-201ENSMUST00000175829 940 ntBASIC14.5□□□□□ -0.09
Ushbp1Q8R370 Gm42929-201ENSMUST00000198374 1286 ntBASIC14.5□□□□□ -0.09
Ushbp1Q8R370 Gm19309-201ENSMUST00000218295 205 ntBASIC14.5□□□□□ -0.09
Ushbp1Q8R370 Gm34466-201ENSMUST00000222218 505 ntTSL 2 BASIC14.5□□□□□ -0.09
Ushbp1Q8R370 AC138604.1-201ENSMUST00000226969 739 ntBASIC14.5□□□□□ -0.09
Ushbp1Q8R370 Txn2-201ENSMUST00000005487 1298 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Ushbp1Q8R370 Lcn10-201ENSMUST00000058912 1106 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Ushbp1Q8R370 Gpr31b-201ENSMUST00000091648 960 ntAPPRIS P1 BASIC14.5□□□□□ -0.09
Ushbp1Q8R370 Tmem200a-201ENSMUST00000066049 4115 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Ushbp1Q8R370 Grb2-203ENSMUST00000106497 2683 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Ushbp1Q8R370 Dus2-201ENSMUST00000034375 1860 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Ushbp1Q8R370 Rnf40-202ENSMUST00000205694 5279 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Ushbp1Q8R370 Gm15544-201ENSMUST00000118776 1531 ntBASIC14.5□□□□□ -0.09
Ushbp1Q8R370 Txlng-203ENSMUST00000112315 2525 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
Ushbp1Q8R370 Ranbp17-202ENSMUST00000102815 5001 ntAPPRIS P2 TSL 1 (best) BASIC14.5□□□□□ -0.09
Ushbp1Q8R370 Kcnk13-201ENSMUST00000049788 3078 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Ushbp1Q8R370 Adamtsl4-202ENSMUST00000117782 4036 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Ushbp1Q8R370 Rad9b-202ENSMUST00000117263 2371 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
Ushbp1Q8R370 Slc13a5-201ENSMUST00000021161 3329 ntAPPRIS P2 TSL 1 (best) BASIC14.49□□□□□ -0.09
Ushbp1Q8R370 Trim27-205ENSMUST00000221464 1400 ntTSL 5 BASIC14.49□□□□□ -0.09
Ushbp1Q8R370 Pxn-202ENSMUST00000086523 2667 ntAPPRIS ALT2 TSL 2 BASIC14.49□□□□□ -0.09
Ushbp1Q8R370 Taldo1-204ENSMUST00000211654 1362 ntTSL 5 BASIC14.49□□□□□ -0.09
Ushbp1Q8R370 Wfdc1-201ENSMUST00000024107 1371 ntAPPRIS P2 TSL 1 (best) BASIC14.49□□□□□ -0.09
Ushbp1Q8R370 Trip4-201ENSMUST00000117083 1999 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Ushbp1Q8R370 Cyth1-204ENSMUST00000106305 3179 ntAPPRIS ALT1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Ushbp1Q8R370 Yeats2-201ENSMUST00000090052 5997 ntAPPRIS P3 TSL 1 (best) BASIC14.49□□□□□ -0.09
Ushbp1Q8R370 Ankrd13c-201ENSMUST00000040787 3903 ntAPPRIS P1 TSL 5 BASIC14.49□□□□□ -0.09
Ushbp1Q8R370 AC116503.1-201ENSMUST00000215445 2192 ntBASIC14.49□□□□□ -0.09
Ushbp1Q8R370 Secisbp2-201ENSMUST00000040117 3328 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Ushbp1Q8R370 Col20a1-205ENSMUST00000228434 5012 ntAPPRIS P2 BASIC14.49□□□□□ -0.09
Ushbp1Q8R370 Sema7a-201ENSMUST00000043059 3297 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Ushbp1Q8R370 Gm16202-201ENSMUST00000117532 544 ntBASIC14.49□□□□□ -0.09
Ushbp1Q8R370 Gm13350-201ENSMUST00000120519 479 ntBASIC14.49□□□□□ -0.09
Ushbp1Q8R370 Gm1335-201ENSMUST00000121653 386 ntBASIC14.49□□□□□ -0.09
Ushbp1Q8R370 S100a14-202ENSMUST00000167598 1059 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Ushbp1Q8R370 Smad7-204ENSMUST00000174411 769 ntTSL 5 BASIC14.49□□□□□ -0.09
Ushbp1Q8R370 Gm28511-201ENSMUST00000191594 450 ntTSL 3 BASIC14.49□□□□□ -0.09
Ushbp1Q8R370 Gm38002-201ENSMUST00000193255 180 ntBASIC14.49□□□□□ -0.09
Ushbp1Q8R370 Gm38266-201ENSMUST00000194931 421 ntBASIC14.49□□□□□ -0.09
Ushbp1Q8R370 Gm33474-201ENSMUST00000199486 1231 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
Ushbp1Q8R370 Gm3961-201ENSMUST00000204425 994 ntBASIC14.49□□□□□ -0.09
Ushbp1Q8R370 Sct-204ENSMUST00000211667 506 ntAPPRIS ALT2 TSL 2 BASIC14.49□□□□□ -0.09
Ushbp1Q8R370 Gm45930-201ENSMUST00000221330 292 ntBASIC14.49□□□□□ -0.09
Ushbp1Q8R370 Sox17-206ENSMUST00000192650 3242 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
Ushbp1Q8R370 CT025610.1-201ENSMUST00000224552 1786 ntBASIC14.49□□□□□ -0.09
Ushbp1Q8R370 Cpeb3-204ENSMUST00000126188 4224 ntAPPRIS ALT2 TSL 1 (best) BASIC14.49□□□□□ -0.09
Ushbp1Q8R370 Gpr18-201ENSMUST00000055475 1498 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Ushbp1Q8R370 Zranb2-201ENSMUST00000029831 2540 ntTSL 5 BASIC14.49□□□□□ -0.09
Ushbp1Q8R370 Tppp-201ENSMUST00000022057 5090 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Ushbp1Q8R370 Hsph1-201ENSMUST00000074846 3240 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
Ushbp1Q8R370 Tcf4-249ENSMUST00000202435 2427 ntTSL 5 BASIC14.49□□□□□ -0.09
Ushbp1Q8R370 Pde12-201ENSMUST00000052932 7725 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Ushbp1Q8R370 Cdc45-201ENSMUST00000000028 2143 ntAPPRIS P3 TSL 1 (best) BASIC14.48□□□□□ -0.09
Ushbp1Q8R370 Zmynd15-201ENSMUST00000039093 2804 ntAPPRIS P2 TSL 1 (best) BASIC14.48□□□□□ -0.09
Ushbp1Q8R370 Cdc42se1-201ENSMUST00000053872 2805 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Ushbp1Q8R370 Mest-211ENSMUST00000163949 2561 ntAPPRIS P3 TSL 1 (best) BASIC14.48□□□□□ -0.09
Ushbp1Q8R370 Klhdc7b-201ENSMUST00000166926 1818 ntAPPRIS P2 BASIC14.48□□□□□ -0.09
Ushbp1Q8R370 Cmpk2-201ENSMUST00000020969 3200 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Ushbp1Q8R370 Aacs-201ENSMUST00000031445 3239 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Ushbp1Q8R370 Miat-205ENSMUST00000182953 9163 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
Ushbp1Q8R370 Gm10305-201ENSMUST00000195331 2475 ntBASIC14.48□□□□□ -0.09
Ushbp1Q8R370 Cep68-201ENSMUST00000050611 4804 ntAPPRIS P2 TSL 1 (best) BASIC14.48□□□□□ -0.09
Ushbp1Q8R370 Ccdc25-201ENSMUST00000022614 2230 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Ushbp1Q8R370 Tor1aip2-207ENSMUST00000128941 2925 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
Ushbp1Q8R370 Inca1-203ENSMUST00000108542 1080 ntAPPRIS P3 TSL 1 (best) BASIC14.48□□□□□ -0.09
Ushbp1Q8R370 Hypk-204ENSMUST00000126764 961 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Ushbp1Q8R370 Gm12347-201ENSMUST00000127883 470 ntTSL 3 BASIC14.48□□□□□ -0.09
Ushbp1Q8R370 Gm12199-201ENSMUST00000137567 517 ntTSL 3 BASIC14.48□□□□□ -0.09
Ushbp1Q8R370 Gm27501-201ENSMUST00000183599 107 ntBASIC14.48□□□□□ -0.09
Ushbp1Q8R370 Dnm3os-203ENSMUST00000185878 557 ntTSL 5 BASIC14.48□□□□□ -0.09
Ushbp1Q8R370 Gm37008-201ENSMUST00000195712 319 ntBASIC14.48□□□□□ -0.09
Ushbp1Q8R370 Chfr-212ENSMUST00000200038 606 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
Ushbp1Q8R370 Gm44066-201ENSMUST00000203263 519 ntTSL 3 BASIC14.48□□□□□ -0.09
Ushbp1Q8R370 Mrto4-ps1-201ENSMUST00000220565 721 ntBASIC14.48□□□□□ -0.09
Ushbp1Q8R370 Hk1-202ENSMUST00000099691 4278 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
Ushbp1Q8R370 Rgma-201ENSMUST00000094312 3586 ntAPPRIS P2 TSL 1 (best) BASIC14.48□□□□□ -0.09
Ushbp1Q8R370 Mlx-203ENSMUST00000107303 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Ushbp1Q8R370 Gm33543-203ENSMUST00000211096 1722 ntAPPRIS P5 TSL 5 BASIC14.48□□□□□ -0.09
Ushbp1Q8R370 Pole2-201ENSMUST00000021359 1706 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Ushbp1Q8R370 Npc2-201ENSMUST00000021668 3299 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Ushbp1Q8R370 Cadm2-202ENSMUST00000120594 3248 ntAPPRIS ALT1 TSL 5 BASIC14.48□□□□□ -0.09
Ushbp1Q8R370 Gm42863-201ENSMUST00000197875 2958 ntBASIC14.48□□□□□ -0.09
Ushbp1Q8R370 Ebna1bp2-201ENSMUST00000030501 2960 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Ushbp1Q8R370 Fchsd1-201ENSMUST00000043437 4270 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Ushbp1Q8R370 Smim13-201ENSMUST00000165561 4483 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Ushbp1Q8R370 Atat1-212ENSMUST00000141662 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
Ushbp1Q8R370 Ltbp2-203ENSMUST00000163189 6470 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
Ushbp1Q8R370 Ddx31-201ENSMUST00000113853 3271 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Ushbp1Q8R370 1500009C09Rik-202ENSMUST00000143238 1552 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
Ushbp1Q8R370 Gm21982-201ENSMUST00000146232 3821 ntTSL 2 BASIC14.47□□□□□ -0.09
Ushbp1Q8R370 Gas7-201ENSMUST00000041611 2968 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
Ushbp1Q8R370 Ccdc190-201ENSMUST00000094348 1731 ntAPPRIS P3 TSL 1 (best) BASIC14.47□□□□□ -0.09
Ushbp1Q8R370 Lmf2-201ENSMUST00000023283 2906 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Ushbp1Q8R370 Nup88-203ENSMUST00000108531 2453 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
Ushbp1Q8R370 Cd34-201ENSMUST00000016638 2454 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Ushbp1Q8R370 Gpr12-203ENSMUST00000197431 1455 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Ushbp1Q8R370 Cpsf4l-203ENSMUST00000106617 1123 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
Ushbp1Q8R370 Gm38297-201ENSMUST00000195122 1057 ntBASIC14.47□□□□□ -0.09
Ushbp1Q8R370 Gm18056-201ENSMUST00000207670 568 ntBASIC14.47□□□□□ -0.09
Retrieved 100 of 76,532 protein–RNA pairs in 31.4 ms