Protein–RNA interactions for Protein: Q8BY87

Usp47, Ubiquitin carboxyl-terminal hydrolase 47, mousemouse

Predictions only

Length 1,376 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp47Q8BY87 Rgs11-202ENSMUST00000122058 2005 ntAPPRIS ALT2 TSL 2 BASIC18.15■□□□□ 0.5
Usp47Q8BY87 Car6-201ENSMUST00000030817 1567 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Usp47Q8BY87 Gm43858-201ENSMUST00000199418 1778 ntBASIC18.15■□□□□ 0.5
Usp47Q8BY87 Ces2e-202ENSMUST00000109410 1999 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Usp47Q8BY87 Adamtsl4-202ENSMUST00000117782 4036 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Usp47Q8BY87 Gpr19-203ENSMUST00000111932 1711 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Usp47Q8BY87 Tcf25-201ENSMUST00000057934 2738 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
Usp47Q8BY87 Zfp574-202ENSMUST00000179556 4140 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Usp47Q8BY87 Ins2-203ENSMUST00000105931 472 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Usp47Q8BY87 Tmod4-202ENSMUST00000107227 1260 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
Usp47Q8BY87 2310057J18Rik-201ENSMUST00000015663 1238 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Usp47Q8BY87 6530403H02Rik-204ENSMUST00000183276 659 ntTSL 3 BASIC18.15■□□□□ 0.5
Usp47Q8BY87 1700031P21Rik-203ENSMUST00000191400 466 ntTSL 3 BASIC18.15■□□□□ 0.5
Usp47Q8BY87 Ighv1-62-201ENSMUST00000193406 350 ntBASIC18.15■□□□□ 0.5
Usp47Q8BY87 Gm42838-201ENSMUST00000196503 439 ntTSL 5 BASIC18.15■□□□□ 0.5
Usp47Q8BY87 Ldha-213ENSMUST00000210631 685 ntTSL 5 BASIC18.15■□□□□ 0.5
Usp47Q8BY87 H2-Oa-201ENSMUST00000025192 1088 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Usp47Q8BY87 Rps3a1-201ENSMUST00000029722 977 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Usp47Q8BY87 Susd6-201ENSMUST00000068519 4977 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Usp47Q8BY87 Zbtb49-202ENSMUST00000114113 2645 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Usp47Q8BY87 Rab17-201ENSMUST00000027529 1831 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Usp47Q8BY87 Ubxn4-201ENSMUST00000027592 4113 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Usp47Q8BY87 4933431M02Rik-201ENSMUST00000203905 1432 ntTSL 1 (best) BASIC18.14■□□□□ 0.5
Usp47Q8BY87 Pam-201ENSMUST00000058762 4095 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.5
Usp47Q8BY87 Bud13-201ENSMUST00000074957 2539 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
Usp47Q8BY87 Plk-ps1-201ENSMUST00000119494 1787 ntBASIC18.14■□□□□ 0.5
Usp47Q8BY87 Nell1-201ENSMUST00000081872 6617 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
Usp47Q8BY87 Slc4a5-201ENSMUST00000039212 5123 ntAPPRIS P2 TSL 5 BASIC18.14■□□□□ 0.5
Usp47Q8BY87 Wiz-201ENSMUST00000064694 2871 ntAPPRIS P4 TSL 1 (best) BASIC18.14■□□□□ 0.49
Usp47Q8BY87 Cnmd-203ENSMUST00000165835 1362 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
Usp47Q8BY87 Slc7a7-206ENSMUST00000197440 2278 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Usp47Q8BY87 Agt-201ENSMUST00000063278 1891 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Usp47Q8BY87 Neurl3-201ENSMUST00000056946 2598 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Usp47Q8BY87 AC110816.2-201ENSMUST00000220360 1323 ntTSL 5 BASIC18.14■□□□□ 0.49
Usp47Q8BY87 Arhgef39-201ENSMUST00000054538 1659 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Usp47Q8BY87 Scyl3-207ENSMUST00000170359 4288 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
Usp47Q8BY87 Camk2d-202ENSMUST00000066466 4075 ntAPPRIS ALT1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Usp47Q8BY87 Necap1-201ENSMUST00000032477 2476 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Usp47Q8BY87 Apoc1-202ENSMUST00000108451 532 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Usp47Q8BY87 Gm5638-201ENSMUST00000118618 1258 ntBASIC18.14■□□□□ 0.49
Usp47Q8BY87 Gm5863-201ENSMUST00000121760 1008 ntBASIC18.14■□□□□ 0.49
Usp47Q8BY87 Tex22-201ENSMUST00000012355 1267 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Usp47Q8BY87 Olfr668-201ENSMUST00000164391 957 ntAPPRIS P1 BASIC18.14■□□□□ 0.49
Usp47Q8BY87 Gm7118-201ENSMUST00000200167 1003 ntBASIC18.14■□□□□ 0.49
Usp47Q8BY87 4933421D24Rik-201ENSMUST00000209302 1286 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Usp47Q8BY87 Olfr667-201ENSMUST00000071362 981 ntAPPRIS P1 BASIC18.14■□□□□ 0.49
Usp47Q8BY87 Olfr666-201ENSMUST00000081116 957 ntAPPRIS P1 BASIC18.14■□□□□ 0.49
Usp47Q8BY87 Gm16070-203ENSMUST00000155588 1902 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Usp47Q8BY87 Otx2-209ENSMUST00000226501 2592 ntAPPRIS P1 BASIC18.14■□□□□ 0.49
Usp47Q8BY87 Erg-201ENSMUST00000077773 2232 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Usp47Q8BY87 Fbln1-201ENSMUST00000057410 3659 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
Usp47Q8BY87 Dpp6-201ENSMUST00000071500 3826 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
Usp47Q8BY87 Lag3-201ENSMUST00000032217 2001 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Usp47Q8BY87 Gm12132-201ENSMUST00000130945 1391 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Usp47Q8BY87 Atp6ap1-202ENSMUST00000114171 2157 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Usp47Q8BY87 CT010488.1-201ENSMUST00000214890 1522 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Usp47Q8BY87 Syt1-201ENSMUST00000064054 4745 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Usp47Q8BY87 Palm2-202ENSMUST00000102905 3271 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
Usp47Q8BY87 Cage1-202ENSMUST00000089840 3449 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Usp47Q8BY87 Ube3b-201ENSMUST00000074002 5194 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Usp47Q8BY87 Zkscan3-207ENSMUST00000223831 2101 ntBASIC18.13■□□□□ 0.49
Usp47Q8BY87 Tmem30a-201ENSMUST00000034878 3658 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Usp47Q8BY87 Ppm1b-204ENSMUST00000112307 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Usp47Q8BY87 Adcy1-201ENSMUST00000020706 12259 ntAPPRIS P1 TSL 2 BASIC18.13■□□□□ 0.49
Usp47Q8BY87 Lamc1-201ENSMUST00000027752 7622 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Usp47Q8BY87 Cux2-210ENSMUST00000168288 4697 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
Usp47Q8BY87 Kcnh1-202ENSMUST00000110844 7161 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Usp47Q8BY87 Gm11597-201ENSMUST00000121423 964 ntBASIC18.13■□□□□ 0.49
Usp47Q8BY87 D630024D03Rik-201ENSMUST00000126265 720 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Usp47Q8BY87 Msrb3-202ENSMUST00000130950 561 ntTSL 3 BASIC18.13■□□□□ 0.49
Usp47Q8BY87 C030047K22Rik-201ENSMUST00000150382 1164 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Usp47Q8BY87 Gm12678-201ENSMUST00000154177 692 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Usp47Q8BY87 Tmbim6-206ENSMUST00000161250 1148 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
Usp47Q8BY87 H2-Ob-202ENSMUST00000167280 1878 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Usp47Q8BY87 AC125209.1-201ENSMUST00000225812 766 ntBASIC18.13■□□□□ 0.49
Usp47Q8BY87 CT025533.2-201ENSMUST00000228715 1248 ntBASIC18.13■□□□□ 0.49
Usp47Q8BY87 Prkcsh-201ENSMUST00000003493 2012 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
Usp47Q8BY87 Lrrc52-201ENSMUST00000036643 1143 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Usp47Q8BY87 Gm3402-201ENSMUST00000036715 981 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
Usp47Q8BY87 Fmr1nb-202ENSMUST00000071848 842 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
Usp47Q8BY87 Gm42928-201ENSMUST00000197338 3339 ntBASIC18.13■□□□□ 0.49
Usp47Q8BY87 Gm37644-201ENSMUST00000192190 2270 ntBASIC18.13■□□□□ 0.49
Usp47Q8BY87 Gm15477-201ENSMUST00000140578 2130 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Usp47Q8BY87 Klhdc7b-201ENSMUST00000166926 1818 ntAPPRIS P2 BASIC18.13■□□□□ 0.49
Usp47Q8BY87 Gm19385-201ENSMUST00000214714 1813 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Usp47Q8BY87 Pard3-222ENSMUST00000162536 5175 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
Usp47Q8BY87 Col2a1-202ENSMUST00000088355 4862 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Usp47Q8BY87 2610507I01Rik-201ENSMUST00000154354 1360 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Usp47Q8BY87 Dppa4-201ENSMUST00000050705 1378 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
Usp47Q8BY87 Cnn1-201ENSMUST00000001384 2381 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Usp47Q8BY87 Chrnd-202ENSMUST00000186373 2949 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Usp47Q8BY87 Fndc3a-201ENSMUST00000089017 6143 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Usp47Q8BY87 Gfod1-201ENSMUST00000055341 6928 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Usp47Q8BY87 Tekt3-201ENSMUST00000035732 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Usp47Q8BY87 Olfr239-201ENSMUST00000112165 948 ntAPPRIS P1 BASIC18.12■□□□□ 0.49
Usp47Q8BY87 Rbm3-204ENSMUST00000115617 1152 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
Usp47Q8BY87 Gm12058-201ENSMUST00000118614 437 ntBASIC18.12■□□□□ 0.49
Usp47Q8BY87 Pdlim2-205ENSMUST00000129174 729 ntTSL 2 BASIC18.12■□□□□ 0.49
Usp47Q8BY87 Gm14597-202ENSMUST00000129769 715 ntAPPRIS P5 TSL 3 BASIC18.12■□□□□ 0.49
Usp47Q8BY87 Gm14019-201ENSMUST00000131514 403 ntTSL 3 BASIC18.12■□□□□ 0.49
Retrieved 100 of 76,532 protein–RNA pairs in 27.1 ms