Protein–RNA interactions for Protein: Q62318

Trim28, Transcription intermediary factor 1-beta, mousemouse

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28Q62318 Gm11290-201ENSMUST00000124833 396 ntTSL 3 BASIC16.67■□□□□ 0.26
Trim28Q62318 Gm17227-202ENSMUST00000170286 1016 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Trim28Q62318 Rhoc-204ENSMUST00000176347 583 ntTSL 5 BASIC16.67■□□□□ 0.26
Trim28Q62318 Gm27046-201ENSMUST00000182160 463 ntBASIC16.67■□□□□ 0.26
Trim28Q62318 Gm27023-201ENSMUST00000182372 285 ntBASIC16.67■□□□□ 0.26
Trim28Q62318 Gm28882-201ENSMUST00000185504 314 ntBASIC16.67■□□□□ 0.26
Trim28Q62318 Gm37312-201ENSMUST00000195753 685 ntTSL 5 BASIC16.67■□□□□ 0.26
Trim28Q62318 Gm33474-201ENSMUST00000199486 1231 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Trim28Q62318 1700011D18Rik-201ENSMUST00000205762 277 ntBASIC16.67■□□□□ 0.26
Trim28Q62318 Gm32850-202ENSMUST00000209149 732 ntTSL 5 BASIC16.67■□□□□ 0.26
Trim28Q62318 AC154222.2-201ENSMUST00000225848 607 ntBASIC16.67■□□□□ 0.26
Trim28Q62318 AC093022.5-201ENSMUST00000226841 1079 ntBASIC16.67■□□□□ 0.26
Trim28Q62318 Arap2-201ENSMUST00000076623 7306 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
Trim28Q62318 Canx-205ENSMUST00000179865 4281 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Trim28Q62318 Cyp4f39-201ENSMUST00000003413 1599 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
Trim28Q62318 Net1-201ENSMUST00000091853 2680 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
Trim28Q62318 Kank2-201ENSMUST00000034717 5040 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Trim28Q62318 Kcnh7-202ENSMUST00000112452 2849 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Trim28Q62318 Anks1-201ENSMUST00000025058 6844 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
Trim28Q62318 4930428O21Rik-201ENSMUST00000198537 1740 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Trim28Q62318 Dhx58-201ENSMUST00000017974 2412 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Trim28Q62318 CT030684.3-201ENSMUST00000227308 2445 ntBASIC16.67■□□□□ 0.26
Trim28Q62318 Agt-201ENSMUST00000063278 1891 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Trim28Q62318 Dnmt3b-206ENSMUST00000103151 3956 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
Trim28Q62318 Tmem19-206ENSMUST00000218731 1346 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Trim28Q62318 8430408G22Rik-201ENSMUST00000067354 1339 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Trim28Q62318 Trp53i11-202ENSMUST00000111266 2703 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Trim28Q62318 Atp2a3-201ENSMUST00000021142 4593 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
Trim28Q62318 Mtrr-209ENSMUST00000223398 3861 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Trim28Q62318 Afmid-201ENSMUST00000073388 2327 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Trim28Q62318 Ppp1r15b-201ENSMUST00000052529 5594 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Trim28Q62318 Tuba1a-201ENSMUST00000097014 1647 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Trim28Q62318 Pphln1-204ENSMUST00000165935 3473 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Trim28Q62318 B430212C06Rik-205ENSMUST00000145081 2623 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Trim28Q62318 Plk-ps1-201ENSMUST00000119494 1787 ntBASIC16.66■□□□□ 0.26
Trim28Q62318 Mesd-201ENSMUST00000094215 4492 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Trim28Q62318 Ccp110-202ENSMUST00000106557 5073 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Trim28Q62318 Hid1-201ENSMUST00000044152 3236 ntAPPRIS ALT1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Trim28Q62318 Smc6-208ENSMUST00000218866 3373 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Trim28Q62318 E230020A03Rik-201ENSMUST00000194646 2386 ntBASIC16.66■□□□□ 0.26
Trim28Q62318 Olfr683-202ENSMUST00000209879 3841 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
Trim28Q62318 Gm7993-201ENSMUST00000200970 1384 ntBASIC16.66■□□□□ 0.26
Trim28Q62318 Slc4a1ap-209ENSMUST00000202214 2806 ntAPPRIS P3 TSL 5 BASIC16.66■□□□□ 0.26
Trim28Q62318 Spred2-202ENSMUST00000093299 4449 ntTSL 5 BASIC16.66■□□□□ 0.26
Trim28Q62318 Podn-201ENSMUST00000044248 2885 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
Trim28Q62318 Tigd2-201ENSMUST00000062626 3007 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Trim28Q62318 Nup98-201ENSMUST00000070165 4052 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Trim28Q62318 Cela2a-201ENSMUST00000102481 1070 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Trim28Q62318 Gm24231-201ENSMUST00000104315 133 ntBASIC16.66■□□□□ 0.26
Trim28Q62318 Gm12015-201ENSMUST00000117065 843 ntBASIC16.66■□□□□ 0.26
Trim28Q62318 Gm14064-201ENSMUST00000134833 727 ntTSL 3 BASIC16.66■□□□□ 0.26
Trim28Q62318 Hsbp1l1-201ENSMUST00000166219 1251 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Trim28Q62318 Eif4ebp2-202ENSMUST00000167087 1422 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
Trim28Q62318 Oxr1-206ENSMUST00000170127 4251 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Trim28Q62318 Adtrp-204ENSMUST00000179758 1046 ntAPPRIS ALT2 TSL 5 BASIC16.66■□□□□ 0.26
Trim28Q62318 Dmrt1i-203ENSMUST00000197311 718 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Trim28Q62318 Calca-204ENSMUST00000205714 416 ntTSL 2 BASIC16.66■□□□□ 0.26
Trim28Q62318 Fam168a-210ENSMUST00000216021 968 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
Trim28Q62318 Anapc11-201ENSMUST00000026128 3229 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Trim28Q62318 Nmnat1-201ENSMUST00000030845 1238 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Trim28Q62318 Grin2c-201ENSMUST00000003351 4279 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
Trim28Q62318 Slc45a1-201ENSMUST00000037827 3387 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
Trim28Q62318 BC049730-201ENSMUST00000051714 1172 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Trim28Q62318 Wnk1-202ENSMUST00000060043 10575 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
Trim28Q62318 Vamp8-202ENSMUST00000142613 2076 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Trim28Q62318 Olfr288-202ENSMUST00000165379 2083 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
Trim28Q62318 Tspan15-201ENSMUST00000047883 3638 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Trim28Q62318 Luc7l2-207ENSMUST00000161227 2405 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Trim28Q62318 Olfm2-201ENSMUST00000034692 1836 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
Trim28Q62318 Gm42863-201ENSMUST00000197875 2958 ntBASIC16.65■□□□□ 0.26
Trim28Q62318 Gpd1l-202ENSMUST00000129305 2543 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Trim28Q62318 4933439K11Rik-203ENSMUST00000169111 1869 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Trim28Q62318 Fgd4-211ENSMUST00000162671 2714 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Trim28Q62318 Tfe3-201ENSMUST00000077680 3277 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Trim28Q62318 AC126444.1-201ENSMUST00000225938 1768 ntBASIC16.65■□□□□ 0.26
Trim28Q62318 Gm13665-201ENSMUST00000120830 528 ntBASIC16.65■□□□□ 0.26
Trim28Q62318 Rmrp-201ENSMUST00000157463 271 ntBASIC16.65■□□□□ 0.26
Trim28Q62318 4732440D04Rik-202ENSMUST00000159618 413 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Trim28Q62318 Stard10-207ENSMUST00000173270 670 ntTSL 5 BASIC16.65■□□□□ 0.26
Trim28Q62318 Gm28511-201ENSMUST00000191594 450 ntTSL 3 BASIC16.65■□□□□ 0.26
Trim28Q62318 AC161537.1-201ENSMUST00000226199 1015 ntBASIC16.65■□□□□ 0.26
Trim28Q62318 AL732506.1-201ENSMUST00000226420 281 ntBASIC16.65■□□□□ 0.26
Trim28Q62318 Dhrs2-201ENSMUST00000022820 1268 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Trim28Q62318 Fam96a-201ENSMUST00000034945 1240 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Trim28Q62318 Aurkc-201ENSMUST00000086248 1154 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
Trim28Q62318 Chaf1a-201ENSMUST00000002914 3308 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Trim28Q62318 Naaladl1-201ENSMUST00000044451 2491 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
Trim28Q62318 Sp4-203ENSMUST00000222314 2677 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
Trim28Q62318 Xrra1-201ENSMUST00000036155 2731 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
Trim28Q62318 Emb-201ENSMUST00000022242 2923 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Trim28Q62318 Plcb1-205ENSMUST00000131552 7202 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Trim28Q62318 Rnf146-201ENSMUST00000037548 4402 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
Trim28Q62318 Phf12-201ENSMUST00000049167 4410 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Trim28Q62318 Dnm2-201ENSMUST00000072362 3502 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
Trim28Q62318 Fcrls-201ENSMUST00000090986 2273 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Trim28Q62318 Slc3a2-207ENSMUST00000206598 1393 ntTSL 2 BASIC16.64■□□□□ 0.26
Trim28Q62318 Rlbp1-202ENSMUST00000179243 2142 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Trim28Q62318 AC123857.2-201ENSMUST00000225756 1582 ntBASIC16.64■□□□□ 0.25
Trim28Q62318 Lzts3-203ENSMUST00000110260 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
Trim28Q62318 Mfsd13b-205ENSMUST00000216241 1761 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
Retrieved 100 of 76,532 protein–RNA pairs in 77.3 ms