Protein–RNA interactions for Protein: Q04887

Sox9, Transcription factor SOX-9, mousemouse

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox9Q04887 Ap2m1-201ENSMUST00000007216 2937 ntAPPRIS P3 TSL 5 BASIC13.33□□□□□ -0.27
Sox9Q04887 Gm12503-201ENSMUST00000146576 3127 ntTSL 1 (best) BASIC13.33□□□□□ -0.27
Sox9Q04887 Rnpepl1-201ENSMUST00000027487 3337 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Sox9Q04887 Marco-201ENSMUST00000027639 1925 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Sox9Q04887 Gtf2ird1-209ENSMUST00000171794 3524 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
Sox9Q04887 Nfatc4-204ENSMUST00000226357 2680 ntAPPRIS ALT2 BASIC13.33□□□□□ -0.28
Sox9Q04887 Ndufaf7-201ENSMUST00000024887 2303 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Sox9Q04887 Hnrnpr-204ENSMUST00000131671 2543 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
Sox9Q04887 4930429D17Rik-201ENSMUST00000198193 1624 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
Sox9Q04887 Pdcd6ip-201ENSMUST00000035086 5951 ntAPPRIS P3 TSL 1 (best) BASIC13.33□□□□□ -0.28
Sox9Q04887 Popdc2-201ENSMUST00000023494 2169 ntAPPRIS P4 TSL 1 (best) BASIC13.33□□□□□ -0.28
Sox9Q04887 Zfp82-201ENSMUST00000080834 2181 ntAPPRIS P3 TSL 5 BASIC13.33□□□□□ -0.28
Sox9Q04887 Ucp3-202ENSMUST00000107059 1260 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.28
Sox9Q04887 Gm12165-201ENSMUST00000117047 342 ntBASIC13.33□□□□□ -0.28
Sox9Q04887 Gm14704-201ENSMUST00000120300 874 ntBASIC13.33□□□□□ -0.28
Sox9Q04887 Gm12798-201ENSMUST00000124786 666 ntTSL 5 BASIC13.33□□□□□ -0.28
Sox9Q04887 Gm12690-201ENSMUST00000132108 354 ntTSL 3 BASIC13.33□□□□□ -0.28
Sox9Q04887 Gm6963-201ENSMUST00000147879 379 ntBASIC13.33□□□□□ -0.28
Sox9Q04887 H1foo-203ENSMUST00000161969 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
Sox9Q04887 Ccdc127-205ENSMUST00000162672 677 ntTSL 3 BASIC13.33□□□□□ -0.28
Sox9Q04887 Rps28-202ENSMUST00000166693 271 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.28
Sox9Q04887 Gm17028-201ENSMUST00000170026 704 ntTSL 3 BASIC13.33□□□□□ -0.28
Sox9Q04887 Ank3-234ENSMUST00000182993 1233 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
Sox9Q04887 Gm29615-201ENSMUST00000185371 697 ntBASIC13.33□□□□□ -0.28
Sox9Q04887 Gm28224-201ENSMUST00000186078 697 ntBASIC13.33□□□□□ -0.28
Sox9Q04887 Gm29001-201ENSMUST00000186177 697 ntBASIC13.33□□□□□ -0.28
Sox9Q04887 Gm28292-201ENSMUST00000186593 697 ntBASIC13.33□□□□□ -0.28
Sox9Q04887 Gm28101-201ENSMUST00000187608 697 ntBASIC13.33□□□□□ -0.28
Sox9Q04887 Gm29076-201ENSMUST00000187689 697 ntBASIC13.33□□□□□ -0.28
Sox9Q04887 Gm28302-201ENSMUST00000187931 697 ntBASIC13.33□□□□□ -0.28
Sox9Q04887 Gm28646-201ENSMUST00000188220 697 ntBASIC13.33□□□□□ -0.28
Sox9Q04887 Gm28205-201ENSMUST00000189177 697 ntBASIC13.33□□□□□ -0.28
Sox9Q04887 Gm29032-201ENSMUST00000189797 697 ntBASIC13.33□□□□□ -0.28
Sox9Q04887 Gm28695-201ENSMUST00000190300 697 ntBASIC13.33□□□□□ -0.28
Sox9Q04887 Gm38210-201ENSMUST00000191944 809 ntBASIC13.33□□□□□ -0.28
Sox9Q04887 Gm37448-201ENSMUST00000192795 697 ntBASIC13.33□□□□□ -0.28
Sox9Q04887 5330425B07Rik-201ENSMUST00000196714 1027 ntBASIC13.33□□□□□ -0.28
Sox9Q04887 Gm43916-201ENSMUST00000205062 967 ntBASIC13.33□□□□□ -0.28
Sox9Q04887 Gm13522-202ENSMUST00000209682 997 ntTSL 5 BASIC13.33□□□□□ -0.28
Sox9Q04887 Fam168a-210ENSMUST00000216021 968 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.28
Sox9Q04887 Gm45925-201ENSMUST00000218882 744 ntBASIC13.33□□□□□ -0.28
Sox9Q04887 1110017D15Rik-201ENSMUST00000030152 1114 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.28
Sox9Q04887 1700029I15Rik-201ENSMUST00000054316 364 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Sox9Q04887 Wfdc21-201ENSMUST00000070832 434 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Sox9Q04887 Abo-202ENSMUST00000114045 1811 ntAPPRIS ALT2 TSL 5 BASIC13.33□□□□□ -0.28
Sox9Q04887 Spin1-201ENSMUST00000095797 4434 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Sox9Q04887 Ylpm1-207ENSMUST00000168977 4893 ntAPPRIS ALT2 TSL 5 BASIC13.33□□□□□ -0.28
Sox9Q04887 Sema4b-204ENSMUST00000205822 3760 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Sox9Q04887 Rundc1-201ENSMUST00000040561 3223 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Sox9Q04887 Hrg-201ENSMUST00000023590 1734 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Sox9Q04887 Ppp6r1-201ENSMUST00000064099 3862 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Sox9Q04887 Trim59-201ENSMUST00000107802 2939 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Sox9Q04887 Olfr649-202ENSMUST00000106859 1382 ntAPPRIS P1 TSL 3 BASIC13.32□□□□□ -0.28
Sox9Q04887 Fam163b-201ENSMUST00000151224 2959 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Sox9Q04887 Tbl1xr1-203ENSMUST00000193734 8237 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Sox9Q04887 Twsg1-201ENSMUST00000024906 4046 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Sox9Q04887 Col7a1-202ENSMUST00000112070 9250 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
Sox9Q04887 Shroom1-201ENSMUST00000018531 2630 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
Sox9Q04887 Eif1ad-201ENSMUST00000025759 2469 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Sox9Q04887 Xlr-202ENSMUST00000067782 1860 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Sox9Q04887 Rnf220-202ENSMUST00000094853 1675 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
Sox9Q04887 Clip2-201ENSMUST00000036999 4893 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
Sox9Q04887 Gosr2-202ENSMUST00000107013 1044 ntTSL 2 BASIC13.32□□□□□ -0.28
Sox9Q04887 F12-202ENSMUST00000170921 478 ntTSL 3 BASIC13.32□□□□□ -0.28
Sox9Q04887 Gm17391-201ENSMUST00000171036 126 ntBASIC13.32□□□□□ -0.28
Sox9Q04887 Gm28411-201ENSMUST00000189864 341 ntTSL 3 BASIC13.32□□□□□ -0.28
Sox9Q04887 S100a3-204ENSMUST00000200290 509 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Sox9Q04887 Gm44772-201ENSMUST00000207623 1191 ntBASIC13.32□□□□□ -0.28
Sox9Q04887 Cbx3-ps8-201ENSMUST00000214564 548 ntBASIC13.32□□□□□ -0.28
Sox9Q04887 Gm3898-202ENSMUST00000216905 328 ntTSL 2 BASIC13.32□□□□□ -0.28
Sox9Q04887 Gm34809-203ENSMUST00000222945 509 ntTSL 5 BASIC13.32□□□□□ -0.28
Sox9Q04887 AC166344.1-202ENSMUST00000224139 234 ntBASIC13.32□□□□□ -0.28
Sox9Q04887 AC132901.1-201ENSMUST00000224345 508 ntBASIC13.32□□□□□ -0.28
Sox9Q04887 Olfr1250-201ENSMUST00000099768 1139 ntAPPRIS P1 BASIC13.32□□□□□ -0.28
Sox9Q04887 Gid4-201ENSMUST00000070681 4283 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Sox9Q04887 Cyp2u1-201ENSMUST00000106337 4378 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Sox9Q04887 Ctbp2-209ENSMUST00000166439 1997 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Sox9Q04887 Olfr718-ps1-203ENSMUST00000215102 4913 ntAPPRIS P5 TSL 5 BASIC13.32□□□□□ -0.28
Sox9Q04887 Gm28539-201ENSMUST00000190050 2982 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
Sox9Q04887 AC091458.1-201ENSMUST00000220902 1361 ntBASIC13.32□□□□□ -0.28
Sox9Q04887 Mypopos-202ENSMUST00000205975 2321 ntBASIC13.31□□□□□ -0.28
Sox9Q04887 Radil-201ENSMUST00000063635 3700 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
Sox9Q04887 Arid4b-203ENSMUST00000110534 5864 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Sox9Q04887 Ttc4-201ENSMUST00000026480 2121 ntAPPRIS P2 TSL 1 (best) BASIC13.31□□□□□ -0.28
Sox9Q04887 Ddhd1-202ENSMUST00000087320 9820 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
Sox9Q04887 Atp2a3-201ENSMUST00000021142 4593 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
Sox9Q04887 Gm11946-201ENSMUST00000123459 3941 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Sox9Q04887 Gm3830-201ENSMUST00000185540 1715 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Sox9Q04887 Commd7-201ENSMUST00000071852 3210 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Sox9Q04887 Kdm2b-201ENSMUST00000031435 3532 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Sox9Q04887 Sqle-201ENSMUST00000022977 2758 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Sox9Q04887 Clpb-202ENSMUST00000106998 2287 ntAPPRIS ALT2 TSL 5 BASIC13.31□□□□□ -0.28
Sox9Q04887 Gm26604-201ENSMUST00000180926 1766 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Sox9Q04887 Cfap77-204ENSMUST00000189711 1759 ntAPPRIS ALT2 TSL 5 BASIC13.31□□□□□ -0.28
Sox9Q04887 Cyp4x1-201ENSMUST00000051400 1524 ntAPPRIS P2 TSL 1 (best) BASIC13.31□□□□□ -0.28
Sox9Q04887 Sec11a-204ENSMUST00000120285 875 ntTSL 3 BASIC13.31□□□□□ -0.28
Sox9Q04887 Gm16195-201ENSMUST00000130607 442 ntTSL 2 BASIC13.31□□□□□ -0.28
Sox9Q04887 4833427G06Rik-201ENSMUST00000170947 973 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Sox9Q04887 Malat1-204ENSMUST00000173523 656 ntTSL 3 BASIC13.31□□□□□ -0.28
Sox9Q04887 Gm21976-204ENSMUST00000186911 528 ntTSL 5 BASIC13.31□□□□□ -0.28
Retrieved 100 of 76,532 protein–RNA pairs in 54.2 ms