Protein–RNA interactions for Protein: P11416

Rara, Retinoic acid receptor alpha, mousemouse

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RaraP11416 4930592C13Rik-201ENSMUST00000196791 661 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
RaraP11416 Mpv17-207ENSMUST00000201491 923 ntTSL 2 BASIC13.97□□□□□ -0.17
RaraP11416 Gm43936-201ENSMUST00000203987 490 ntTSL 5 BASIC13.97□□□□□ -0.17
RaraP11416 Gm6458-201ENSMUST00000211573 635 ntBASIC13.97□□□□□ -0.17
RaraP11416 AC155286.1-201ENSMUST00000218632 448 ntBASIC13.97□□□□□ -0.17
RaraP11416 Il27-201ENSMUST00000058429 1021 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
RaraP11416 Rpl36-201ENSMUST00000080492 404 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
RaraP11416 Gm10188-201ENSMUST00000086544 720 ntAPPRIS P1 BASIC13.97□□□□□ -0.17
RaraP11416 Gm10578-202ENSMUST00000211070 2876 ntTSL 2 BASIC13.97□□□□□ -0.17
RaraP11416 Dync1li1-201ENSMUST00000047404 2601 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
RaraP11416 Zfyve28-201ENSMUST00000094868 3983 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
RaraP11416 Hnrnph2-202ENSMUST00000059297 2364 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
RaraP11416 Nxph1-201ENSMUST00000060369 2578 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
RaraP11416 Nek1-201ENSMUST00000034065 5401 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
RaraP11416 Sars-202ENSMUST00000102625 1866 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
RaraP11416 F3-201ENSMUST00000029771 1872 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
RaraP11416 Gm32479-201ENSMUST00000204226 2739 ntTSL 2 BASIC13.97□□□□□ -0.17
RaraP11416 Oit3-201ENSMUST00000009798 2717 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
RaraP11416 Mcpt9-201ENSMUST00000095798 2000 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
RaraP11416 Slc29a1-204ENSMUST00000163492 2216 ntAPPRIS P3 TSL 1 (best) BASIC13.96□□□□□ -0.17
RaraP11416 Ccdc167-202ENSMUST00000128751 1365 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
RaraP11416 Cacna2d1-203ENSMUST00000101581 3879 ntAPPRIS P2 TSL 1 (best) BASIC13.96□□□□□ -0.17
RaraP11416 Cacna2d1-206ENSMUST00000180204 3882 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
RaraP11416 Zp1-201ENSMUST00000025641 1963 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
RaraP11416 Dpp9-201ENSMUST00000038794 3374 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
RaraP11416 Gm15544-201ENSMUST00000118776 1531 ntBASIC13.96□□□□□ -0.17
RaraP11416 Sh3bp4-201ENSMUST00000066279 4995 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
RaraP11416 Rlbp1-202ENSMUST00000179243 2142 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
RaraP11416 Hgs-201ENSMUST00000026900 2908 ntAPPRIS P2 TSL 1 (best) BASIC13.96□□□□□ -0.17
RaraP11416 Coq3-201ENSMUST00000029909 2651 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
RaraP11416 Fibin-201ENSMUST00000099626 2267 ntAPPRIS P1 BASIC13.96□□□□□ -0.17
RaraP11416 Txndc2-201ENSMUST00000050236 1899 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
RaraP11416 Wipf3-201ENSMUST00000126637 4414 ntAPPRIS ALT2 TSL 5 BASIC13.96□□□□□ -0.17
RaraP11416 Gpr12-203ENSMUST00000197431 1455 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
RaraP11416 Spryd7-201ENSMUST00000022497 4002 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
RaraP11416 Ighv5-17-201ENSMUST00000103459 405 ntAPPRIS P1 BASIC13.96□□□□□ -0.17
RaraP11416 Plod1-202ENSMUST00000105712 1059 ntTSL 2 BASIC13.96□□□□□ -0.17
RaraP11416 Ins2-204ENSMUST00000105932 455 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
RaraP11416 Chchd7-208ENSMUST00000121651 620 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
RaraP11416 Tmem80-205ENSMUST00000132061 667 ntAPPRIS P1 TSL 3 BASIC13.96□□□□□ -0.17
RaraP11416 Egfl7-208ENSMUST00000149789 683 ntTSL 3 BASIC13.96□□□□□ -0.17
RaraP11416 Atp5j2-202ENSMUST00000161741 955 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
RaraP11416 Gm9061-201ENSMUST00000182707 1006 ntBASIC13.96□□□□□ -0.17
RaraP11416 AL593843.1-201ENSMUST00000195891 145 ntBASIC13.96□□□□□ -0.17
RaraP11416 Tspan3-203ENSMUST00000215906 842 ntTSL 3 BASIC13.96□□□□□ -0.17
RaraP11416 Ins2-201ENSMUST00000000220 478 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
RaraP11416 AC154305.4-201ENSMUST00000224520 614 ntBASIC13.96□□□□□ -0.17
RaraP11416 Chchd7-201ENSMUST00000041122 672 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
RaraP11416 Gm43666-201ENSMUST00000197116 2989 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
RaraP11416 Tgm1-201ENSMUST00000002389 2791 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
RaraP11416 Bcl6-201ENSMUST00000023151 3525 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
RaraP11416 E230020A03Rik-201ENSMUST00000194646 2386 ntBASIC13.96□□□□□ -0.18
RaraP11416 Krit1-201ENSMUST00000080085 2930 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
RaraP11416 D230017M19Rik-201ENSMUST00000180722 3096 ntTSL 1 (best) BASIC13.96□□□□□ -0.18
RaraP11416 AC101945.2-201ENSMUST00000227886 1377 ntBASIC13.96□□□□□ -0.18
RaraP11416 Esrp1-203ENSMUST00000108311 3864 ntTSL 5 BASIC13.95□□□□□ -0.18
RaraP11416 Ncoa7-201ENSMUST00000068567 5105 ntAPPRIS P3 TSL 5 BASIC13.95□□□□□ -0.18
RaraP11416 Wdr45-223ENSMUST00000207675 1335 ntTSL 5 BASIC13.95□□□□□ -0.18
RaraP11416 Rcsd1-202ENSMUST00000097474 5001 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
RaraP11416 Polrmt-201ENSMUST00000020580 3755 ntAPPRIS P2 TSL 1 (best) BASIC13.95□□□□□ -0.18
RaraP11416 Kif16b-201ENSMUST00000043589 6383 ntAPPRIS P1 TSL 2 BASIC13.95□□□□□ -0.18
RaraP11416 Ank3-201ENSMUST00000047061 2517 ntTSL 5 BASIC13.95□□□□□ -0.18
RaraP11416 Chchd10-203ENSMUST00000219839 1488 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
RaraP11416 Trim9-209ENSMUST00000222316 3049 ntTSL 2 BASIC13.95□□□□□ -0.18
RaraP11416 Med25-211ENSMUST00000208551 2678 ntTSL 2 BASIC13.95□□□□□ -0.18
RaraP11416 Itfg2-201ENSMUST00000001559 2320 ntAPPRIS P2 TSL 1 (best) BASIC13.95□□□□□ -0.18
RaraP11416 Plk2-201ENSMUST00000022212 2800 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
RaraP11416 Tmem201-203ENSMUST00000105687 3697 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
RaraP11416 Gm7488-201ENSMUST00000117148 684 ntBASIC13.95□□□□□ -0.18
RaraP11416 St6galnac6-209ENSMUST00000131229 1013 ntTSL 2 BASIC13.95□□□□□ -0.18
RaraP11416 Lrrc3c-201ENSMUST00000142268 902 ntAPPRIS P1 TSL 3 BASIC13.95□□□□□ -0.18
RaraP11416 1600025M17Rik-202ENSMUST00000151426 547 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
RaraP11416 Il11-202ENSMUST00000163481 990 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
RaraP11416 Carmn-202ENSMUST00000182244 988 ntTSL 2 BASIC13.95□□□□□ -0.18
RaraP11416 Gm38411-201ENSMUST00000197971 941 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
RaraP11416 4930449I04Rik-201ENSMUST00000198191 1123 ntBASIC13.95□□□□□ -0.18
RaraP11416 AC158982.1-201ENSMUST00000228377 901 ntBASIC13.95□□□□□ -0.18
RaraP11416 Emc4-201ENSMUST00000028551 983 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
RaraP11416 Dpm3-201ENSMUST00000040824 404 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
RaraP11416 Spsb2-201ENSMUST00000047760 1213 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
RaraP11416 Gm8973-201ENSMUST00000079818 315 ntAPPRIS P1 BASIC13.95□□□□□ -0.18
RaraP11416 Fcrls-201ENSMUST00000090986 2273 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
RaraP11416 Msh6-201ENSMUST00000005503 4254 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
RaraP11416 Hexim2-201ENSMUST00000062530 1910 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
RaraP11416 Trip13-201ENSMUST00000022053 3399 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
RaraP11416 Celf1-202ENSMUST00000068726 7851 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
RaraP11416 Fam171a1-201ENSMUST00000062934 4129 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
RaraP11416 Npepps-215ENSMUST00000167806 2307 ntTSL 5 BASIC13.95□□□□□ -0.18
RaraP11416 Nhlh2-203ENSMUST00000198675 3943 ntAPPRIS P1 TSL 2 BASIC13.95□□□□□ -0.18
RaraP11416 Sp7-201ENSMUST00000078508 2906 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
RaraP11416 Foxp1-205ENSMUST00000113324 2121 ntTSL 5 BASIC13.94□□□□□ -0.18
RaraP11416 Foxp1-207ENSMUST00000113328 2121 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
RaraP11416 Foxp1-228ENSMUST00000177307 2121 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
RaraP11416 Dysf-201ENSMUST00000081904 6660 ntAPPRIS P4 TSL 1 (best) BASIC13.94□□□□□ -0.18
RaraP11416 Plekhd1-201ENSMUST00000140770 3535 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
RaraP11416 2900097C17Rik-202ENSMUST00000192863 4915 ntBASIC13.94□□□□□ -0.18
RaraP11416 1110028F18Rik-201ENSMUST00000183365 1341 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
RaraP11416 4930534D22Rik-201ENSMUST00000181438 2715 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
RaraP11416 Pggt1b-201ENSMUST00000025354 2736 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
RaraP11416 Nphp4-201ENSMUST00000056567 4583 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Retrieved 100 of 76,532 protein–RNA pairs in 11.8 ms