Protein–RNA interactions for Protein: Q9QXN0

Shroom3, Protein Shroom3, mousemouse

Predictions only

Length 1,986 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shroom3Q9QXN0 Gm10232-201ENSMUST00000089221 720 ntBASIC21.39■■□□□ 1.02
Shroom3Q9QXN0 Pkig-202ENSMUST00000099105 640 ntAPPRIS P1 TSL 2 BASIC21.39■■□□□ 1.02
Shroom3Q9QXN0 4930444P10Rik-202ENSMUST00000145070 1844 ntAPPRIS P2 TSL 2 BASIC21.39■■□□□ 1.01
Shroom3Q9QXN0 Txnrd2-213ENSMUST00000178093 1785 ntTSL 5 BASIC21.39■■□□□ 1.01
Shroom3Q9QXN0 D030056L22Rik-202ENSMUST00000062753 1677 ntAPPRIS ALT2 TSL 1 (best) BASIC21.39■■□□□ 1.01
Shroom3Q9QXN0 Rab26-201ENSMUST00000035797 1575 ntAPPRIS P2 TSL 1 (best) BASIC21.39■■□□□ 1.01
Shroom3Q9QXN0 Mrgbp-201ENSMUST00000029085 1510 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Shroom3Q9QXN0 Zfp579-201ENSMUST00000108572 2157 ntAPPRIS P1 TSL 2 BASIC21.38■■□□□ 1.01
Shroom3Q9QXN0 Tle1-205ENSMUST00000107337 2067 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
Shroom3Q9QXN0 Sh3rf3-202ENSMUST00000135526 1940 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
Shroom3Q9QXN0 Tmem74b-201ENSMUST00000060196 1435 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Shroom3Q9QXN0 Exosc8-201ENSMUST00000029316 1300 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Shroom3Q9QXN0 Wipi1-203ENSMUST00000106689 1220 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
Shroom3Q9QXN0 Cebpa-202ENSMUST00000205391 2161 ntTSL 5 BASIC21.37■■□□□ 1.01
Shroom3Q9QXN0 Prpsap2-204ENSMUST00000168115 1771 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Shroom3Q9QXN0 Tinagl1-203ENSMUST00000105999 1952 ntAPPRIS P2 TSL 1 (best) BASIC21.36■■□□□ 1.01
Shroom3Q9QXN0 Rabac1-201ENSMUST00000076961 899 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Shroom3Q9QXN0 Chrna7-201ENSMUST00000032738 2078 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Shroom3Q9QXN0 Spire2-201ENSMUST00000010298 2330 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Shroom3Q9QXN0 Bex1-201ENSMUST00000058125 866 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Shroom3Q9QXN0 Hif1a-203ENSMUST00000110464 1759 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
Shroom3Q9QXN0 Rfx5-205ENSMUST00000107260 2355 ntAPPRIS P1 TSL 5 BASIC21.35■■□□□ 1.01
Shroom3Q9QXN0 Hagh-201ENSMUST00000024974 1101 ntAPPRIS ALT1 TSL 5 BASIC21.35■■□□□ 1.01
Shroom3Q9QXN0 Cacybp-201ENSMUST00000014370 2098 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Shroom3Q9QXN0 Mcoln1-201ENSMUST00000004683 2065 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Shroom3Q9QXN0 Tmem160-201ENSMUST00000019302 815 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Shroom3Q9QXN0 Polr1d-201ENSMUST00000050970 1196 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Shroom3Q9QXN0 Fam60a-202ENSMUST00000081956 2737 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Shroom3Q9QXN0 Gm45371-201ENSMUST00000210723 459 ntTSL 3 BASIC21.34■■□□□ 1.01
Shroom3Q9QXN0 Kctd20-201ENSMUST00000057174 2368 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Shroom3Q9QXN0 Gm32051-202ENSMUST00000197905 2385 ntBASIC21.33■■□□□ 1.01
Shroom3Q9QXN0 Txnrd2-212ENSMUST00000177856 1878 ntAPPRIS ALT2 TSL 5 BASIC21.33■■□□□ 1.01
Shroom3Q9QXN0 Rtl10-201ENSMUST00000146673 865 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Shroom3Q9QXN0 Rap1a-202ENSMUST00000197094 782 ntTSL 3 BASIC21.33■■□□□ 1.01
Shroom3Q9QXN0 Pth2-201ENSMUST00000042754 503 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Shroom3Q9QXN0 Rnaset2b-202ENSMUST00000179728 2448 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
Shroom3Q9QXN0 Slc18a3-201ENSMUST00000191501 2413 ntAPPRIS P1 BASIC21.33■■□□□ 1
Shroom3Q9QXN0 Ankrd13c-202ENSMUST00000164582 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Shroom3Q9QXN0 Hs6st3-201ENSMUST00000065904 1708 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Shroom3Q9QXN0 Dynlt1f-201ENSMUST00000179554 807 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Shroom3Q9QXN0 Ltb-203ENSMUST00000173600 905 ntAPPRIS ALT2 TSL 5 BASIC21.32■■□□□ 1
Shroom3Q9QXN0 AC122379.1-201ENSMUST00000220658 355 ntTSL 3 BASIC21.32■■□□□ 1
Shroom3Q9QXN0 Vegfb-201ENSMUST00000025914 1281 ntAPPRIS P3 TSL 1 (best) BASIC21.32■■□□□ 1
Shroom3Q9QXN0 Cbln2-204ENSMUST00000169470 2201 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Shroom3Q9QXN0 Adssl1-201ENSMUST00000021726 1777 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Shroom3Q9QXN0 Dok6-201ENSMUST00000097495 1441 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Shroom3Q9QXN0 Ttc7b-201ENSMUST00000062957 3446 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Shroom3Q9QXN0 Fam189a2-201ENSMUST00000096164 2547 ntAPPRIS P1 TSL 5 BASIC21.31■■□□□ 1
Shroom3Q9QXN0 Pgk1-201ENSMUST00000081593 1825 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Shroom3Q9QXN0 Efna3-203ENSMUST00000200436 742 ntAPPRIS ALT2 TSL 5 BASIC21.3■■□□□ 1
Shroom3Q9QXN0 Kcnj12-202ENSMUST00000089184 2291 ntAPPRIS P3 TSL 1 (best) BASIC21.3■■□□□ 1
Shroom3Q9QXN0 Sh3bp1-203ENSMUST00000089378 2001 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Shroom3Q9QXN0 Ccdc92-201ENSMUST00000036206 2473 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Shroom3Q9QXN0 Gm13429-202ENSMUST00000128242 692 ntTSL 3 BASIC21.3■■□□□ 1
Shroom3Q9QXN0 Srsf6-202ENSMUST00000126163 515 ntTSL 5 BASIC21.29■■□□□ 1
Shroom3Q9QXN0 Ubac1-201ENSMUST00000036509 1852 ntAPPRIS P2 TSL 1 (best) BASIC21.29■■□□□ 1
Shroom3Q9QXN0 Cgrrf1-201ENSMUST00000068532 1324 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Shroom3Q9QXN0 Trim9-208ENSMUST00000221370 2393 ntTSL 1 (best) BASIC21.28■■□□□ 1
Shroom3Q9QXN0 Prpsap2-201ENSMUST00000004955 1837 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Shroom3Q9QXN0 Txn2-204ENSMUST00000109748 2049 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Shroom3Q9QXN0 Txnrd2-201ENSMUST00000115604 1235 ntTSL 1 (best) BASIC21.28■■□□□ 1
Shroom3Q9QXN0 Fkbp8-201ENSMUST00000075491 1698 ntAPPRIS P4 TSL 1 (best) BASIC21.28■■□□□ 1
Shroom3Q9QXN0 Hand2-201ENSMUST00000040104 2351 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Shroom3Q9QXN0 Irak1-202ENSMUST00000068286 2537 ntAPPRIS P3 TSL 1 (best) BASIC21.27■■□□□ 1
Shroom3Q9QXN0 1810010H24Rik-202ENSMUST00000140447 1677 ntAPPRIS ALT2 TSL 5 BASIC21.27■■□□□ 1
Shroom3Q9QXN0 Ccdc9-201ENSMUST00000041010 2379 ntAPPRIS P3 TSL 1 (best) BASIC21.27■■□□□ 1
Shroom3Q9QXN0 Llph-202ENSMUST00000130198 1463 ntAPPRIS P1 TSL 3 BASIC21.27■■□□□ 1
Shroom3Q9QXN0 Hoxd11-202ENSMUST00000142312 1111 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Shroom3Q9QXN0 Ramp1-202ENSMUST00000165855 852 ntTSL 2 BASIC21.27■■□□□ 1
Shroom3Q9QXN0 Sin3b-203ENSMUST00000212095 1257 ntTSL 1 (best) BASIC21.27■■□□□ 1
Shroom3Q9QXN0 AC117245.1-201ENSMUST00000215481 566 ntTSL 3 BASIC21.27■■□□□ 1
Shroom3Q9QXN0 Nkx2-5-201ENSMUST00000015723 1525 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Shroom3Q9QXN0 AC158990.1-201ENSMUST00000221450 2016 ntBASIC21.27■■□□□ 1
Shroom3Q9QXN0 Morf4l1-201ENSMUST00000085248 1882 ntTSL 1 (best) BASIC21.27■■□□□ 1
Shroom3Q9QXN0 Dync1i1-203ENSMUST00000115556 2718 ntTSL 1 (best) BASIC21.27■■□□□ 1
Shroom3Q9QXN0 Trip10-207ENSMUST00000224947 2016 ntAPPRIS P2 BASIC21.27■□□□□ 0.99
Shroom3Q9QXN0 H2afj-201ENSMUST00000074556 1831 ntAPPRIS P2 BASIC21.27■□□□□ 0.99
Shroom3Q9QXN0 Pfdn4-204ENSMUST00000109148 736 ntTSL 3 BASIC21.27■□□□□ 0.99
Shroom3Q9QXN0 Zfand2b-204ENSMUST00000160439 1206 ntAPPRIS P1 TSL 5 BASIC21.27■□□□□ 0.99
Shroom3Q9QXN0 Kcnip2-201ENSMUST00000026247 1203 ntAPPRIS ALT1 TSL 5 BASIC21.27■□□□□ 0.99
Shroom3Q9QXN0 Rtca-201ENSMUST00000000348 1594 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Shroom3Q9QXN0 Gnpnat1-201ENSMUST00000046191 2788 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Shroom3Q9QXN0 Gm11847-201ENSMUST00000125165 1119 ntBASIC21.26■□□□□ 0.99
Shroom3Q9QXN0 Hnrnpa3-201ENSMUST00000090792 1140 ntAPPRIS P3 TSL 5 BASIC21.26■□□□□ 0.99
Shroom3Q9QXN0 Whrn-202ENSMUST00000063672 2804 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Shroom3Q9QXN0 Rps2-ps6-201ENSMUST00000095471 855 ntBASIC21.25■□□□□ 0.99
Shroom3Q9QXN0 Gm42418-201ENSMUST00000182010 1831 ntBASIC21.25■□□□□ 0.99
Shroom3Q9QXN0 Ndrg2-202ENSMUST00000111632 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Shroom3Q9QXN0 March2-206ENSMUST00000173329 2566 ntTSL 2 BASIC21.25■□□□□ 0.99
Shroom3Q9QXN0 Fastk-201ENSMUST00000030800 1893 ntAPPRIS P2 TSL 1 (best) BASIC21.25■□□□□ 0.99
Shroom3Q9QXN0 Copz2-201ENSMUST00000018816 930 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Shroom3Q9QXN0 Smco4-203ENSMUST00000215907 994 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Shroom3Q9QXN0 Serp2-201ENSMUST00000064517 748 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Shroom3Q9QXN0 Scarb1-202ENSMUST00000111390 2367 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Shroom3Q9QXN0 Spata5l1-202ENSMUST00000152813 1526 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Shroom3Q9QXN0 Bub3-205ENSMUST00000208571 747 ntTSL 5 BASIC21.24■□□□□ 0.99
Shroom3Q9QXN0 Nenf-201ENSMUST00000046770 742 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Shroom3Q9QXN0 Notum-202ENSMUST00000106177 2212 ntAPPRIS P1 TSL 5 BASIC21.23■□□□□ 0.99
Shroom3Q9QXN0 Kcnip1-203ENSMUST00000109340 1840 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Shroom3Q9QXN0 Naxd-202ENSMUST00000177955 1307 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Retrieved 100 of 76,532 protein–RNA pairs in 84.2 ms