Protein–RNA interactions for Protein: Q99MT2

Msh4, MutS protein homolog 4, mousemouse

Predictions only

Length 958 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msh4Q99MT2 Vegfb-201ENSMUST00000025914 1281 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
Msh4Q99MT2 Tmem120b-201ENSMUST00000067505 2164 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Msh4Q99MT2 AC117245.4-201ENSMUST00000217388 1646 ntBASIC20.53■□□□□ 0.88
Msh4Q99MT2 Gtpbp6-201ENSMUST00000077220 1617 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Msh4Q99MT2 Magi3-202ENSMUST00000121198 5912 ntAPPRIS ALT2 TSL 5 BASIC20.52■□□□□ 0.88
Msh4Q99MT2 BC022687-201ENSMUST00000037014 1960 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Msh4Q99MT2 Fance-201ENSMUST00000088007 1581 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
Msh4Q99MT2 Pdgfa-204ENSMUST00000110897 1287 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
Msh4Q99MT2 Gm16599-201ENSMUST00000148082 1182 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
Msh4Q99MT2 Gm22567-201ENSMUST00000175542 342 ntBASIC20.52■□□□□ 0.88
Msh4Q99MT2 Slc16a11-205ENSMUST00000126388 1938 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
Msh4Q99MT2 Dirc2-201ENSMUST00000023554 5395 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Msh4Q99MT2 Dlg3-201ENSMUST00000000901 4885 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
Msh4Q99MT2 Dlk2-204ENSMUST00000170271 1783 ntTSL 5 BASIC20.51■□□□□ 0.87
Msh4Q99MT2 Mbd3-201ENSMUST00000092295 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Msh4Q99MT2 Cnnm1-201ENSMUST00000165311 5037 ntAPPRIS P2 TSL 1 (best) BASIC20.51■□□□□ 0.87
Msh4Q99MT2 Faim-202ENSMUST00000112911 803 ntAPPRIS ALT1 TSL 2 BASIC20.51■□□□□ 0.87
Msh4Q99MT2 H2afj-202ENSMUST00000203982 577 ntAPPRIS ALT1 TSL 3 BASIC20.51■□□□□ 0.87
Msh4Q99MT2 Ankra2-202ENSMUST00000091356 1949 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Msh4Q99MT2 Podxl2-210ENSMUST00000145944 2065 ntAPPRIS ALT2 TSL 5 BASIC20.5■□□□□ 0.87
Msh4Q99MT2 Trim27-207ENSMUST00000223065 2046 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Msh4Q99MT2 Gm15893-201ENSMUST00000143208 1559 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Msh4Q99MT2 Sec22c-202ENSMUST00000111560 2669 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Msh4Q99MT2 Fam241b-203ENSMUST00000124615 1493 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Msh4Q99MT2 Prpsap2-204ENSMUST00000168115 1771 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Msh4Q99MT2 Rbfa-201ENSMUST00000025462 1377 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Msh4Q99MT2 Gm20684-201ENSMUST00000176744 380 ntTSL 3 BASIC20.49■□□□□ 0.87
Msh4Q99MT2 AC102554.1-201ENSMUST00000216236 537 ntTSL 5 BASIC20.49■□□□□ 0.87
Msh4Q99MT2 Mtx1-202ENSMUST00000118964 1445 ntTSL 5 BASIC20.49■□□□□ 0.87
Msh4Q99MT2 Spata6-213ENSMUST00000153746 1444 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
Msh4Q99MT2 Atpaf1-203ENSMUST00000176047 2330 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Msh4Q99MT2 Klhdc2-201ENSMUST00000021362 1905 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Msh4Q99MT2 Cacybp-201ENSMUST00000014370 2098 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Msh4Q99MT2 Btbd6-204ENSMUST00000221104 2085 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
Msh4Q99MT2 Rcc1l-201ENSMUST00000076228 2321 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Msh4Q99MT2 Pwwp2b-202ENSMUST00000172136 2543 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Msh4Q99MT2 Taf11-202ENSMUST00000114848 2207 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Msh4Q99MT2 Ggnbp2-202ENSMUST00000100686 2275 ntTSL 5 BASIC20.48■□□□□ 0.87
Msh4Q99MT2 Tmem164-205ENSMUST00000112891 1654 ntTSL 5 BASIC20.48■□□□□ 0.87
Msh4Q99MT2 Gga1-201ENSMUST00000041587 3034 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Msh4Q99MT2 Ammecr1-201ENSMUST00000041317 5437 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Msh4Q99MT2 Lyar-201ENSMUST00000087514 1563 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Msh4Q99MT2 Mpv17l2-201ENSMUST00000038626 980 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Msh4Q99MT2 Gm2415-201ENSMUST00000128982 1474 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
Msh4Q99MT2 Ttc14-206ENSMUST00000196975 1711 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
Msh4Q99MT2 Akt1s1-201ENSMUST00000054343 1592 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
Msh4Q99MT2 4930444P10Rik-202ENSMUST00000145070 1844 ntAPPRIS P2 TSL 2 BASIC20.46■□□□□ 0.87
Msh4Q99MT2 Ptpn12-201ENSMUST00000030556 3280 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Msh4Q99MT2 Ccdc92-201ENSMUST00000036206 2473 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Msh4Q99MT2 Gm26796-201ENSMUST00000181092 2276 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
Msh4Q99MT2 Atp8a1-203ENSMUST00000113651 808 ntTSL 5 BASIC20.46■□□□□ 0.87
Msh4Q99MT2 Aebp2-203ENSMUST00000095350 2575 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
Msh4Q99MT2 Tusc3-201ENSMUST00000167992 1511 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Msh4Q99MT2 Tbc1d2b-201ENSMUST00000041767 5956 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Msh4Q99MT2 Psme4-201ENSMUST00000041231 6491 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Msh4Q99MT2 Abhd11-201ENSMUST00000046999 1493 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Msh4Q99MT2 Cntln-202ENSMUST00000102819 2239 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
Msh4Q99MT2 Gm38160-201ENSMUST00000193090 2499 ntBASIC20.45■□□□□ 0.86
Msh4Q99MT2 Spata2-202ENSMUST00000109211 1531 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Msh4Q99MT2 Rin3-207ENSMUST00000150795 937 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Msh4Q99MT2 Fam98c-209ENSMUST00000164589 1293 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
Msh4Q99MT2 Tnks2-201ENSMUST00000025729 6481 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
Msh4Q99MT2 Slc12a2-201ENSMUST00000115366 6520 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Msh4Q99MT2 Picalm-212ENSMUST00000208730 3427 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Msh4Q99MT2 Cbln2-204ENSMUST00000169470 2201 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Msh4Q99MT2 Phf2os1-201ENSMUST00000123212 498 ntTSL 3 BASIC20.44■□□□□ 0.86
Msh4Q99MT2 Gm5522-201ENSMUST00000189483 1242 ntBASIC20.44■□□□□ 0.86
Msh4Q99MT2 Pcf11-204ENSMUST00000208058 461 ntTSL 5 BASIC20.44■□□□□ 0.86
Msh4Q99MT2 Tifa-202ENSMUST00000163775 1646 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Msh4Q99MT2 Sh3bp1-203ENSMUST00000089378 2001 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Msh4Q99MT2 Ubl4a-206ENSMUST00000155676 2442 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Msh4Q99MT2 Specc1-206ENSMUST00000201015 1789 ntAPPRIS ALT2 TSL 5 BASIC20.44■□□□□ 0.86
Msh4Q99MT2 Adcy9-203ENSMUST00000120080 4974 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
Msh4Q99MT2 Rap1a-201ENSMUST00000090678 2407 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Msh4Q99MT2 Hnrnpab-202ENSMUST00000101249 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
Msh4Q99MT2 Mfn1-201ENSMUST00000091257 4562 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Msh4Q99MT2 Wipi1-203ENSMUST00000106689 1220 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
Msh4Q99MT2 Gm15546-201ENSMUST00000122095 826 ntBASIC20.43■□□□□ 0.86
Msh4Q99MT2 Tcerg1l-201ENSMUST00000160436 2565 ntAPPRIS P1 TSL 5 BASIC20.43■□□□□ 0.86
Msh4Q99MT2 Lmtk3-202ENSMUST00000120005 4997 ntAPPRIS P2 TSL 1 (best) BASIC20.43■□□□□ 0.86
Msh4Q99MT2 Cdkn2aipnl-201ENSMUST00000102763 1832 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Msh4Q99MT2 Fastk-202ENSMUST00000115041 1399 ntAPPRIS ALT2 TSL 5 BASIC20.43■□□□□ 0.86
Msh4Q99MT2 Ispd-204ENSMUST00000221452 1924 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
Msh4Q99MT2 Pdss1-207ENSMUST00000152170 1538 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
Msh4Q99MT2 Btbd6-201ENSMUST00000002880 2057 ntAPPRIS P4 TSL 1 (best) BASIC20.42■□□□□ 0.86
Msh4Q99MT2 P2rx2-202ENSMUST00000112478 1632 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
Msh4Q99MT2 Smox-207ENSMUST00000110186 2170 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
Msh4Q99MT2 Myo1b-202ENSMUST00000046390 5052 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
Msh4Q99MT2 4833418N17Rik-201ENSMUST00000064826 615 ntBASIC20.42■□□□□ 0.86
Msh4Q99MT2 Idh3a-205ENSMUST00000217484 2580 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
Msh4Q99MT2 Raver2-202ENSMUST00000106955 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
Msh4Q99MT2 Rell2-211ENSMUST00000176902 1835 ntTSL 5 BASIC20.41■□□□□ 0.86
Msh4Q99MT2 Pptc7-201ENSMUST00000053426 4644 ntAPPRIS P2 TSL 1 (best) BASIC20.41■□□□□ 0.86
Msh4Q99MT2 A830035O19Rik-201ENSMUST00000216147 1898 ntBASIC20.41■□□□□ 0.86
Msh4Q99MT2 Kif1bp-201ENSMUST00000065887 2472 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Msh4Q99MT2 Gm15334-201ENSMUST00000131421 325 ntTSL 3 BASIC20.41■□□□□ 0.86
Msh4Q99MT2 Gm11614-201ENSMUST00000137598 736 ntTSL 5 BASIC20.41■□□□□ 0.86
Msh4Q99MT2 March2-203ENSMUST00000172767 1381 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Msh4Q99MT2 Dnajc19-203ENSMUST00000117223 1695 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Msh4Q99MT2 Rnf166-201ENSMUST00000014614 1783 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Retrieved 100 of 76,532 protein–RNA pairs in 52.5 ms