Protein–RNA interactions for Protein: Q8C0D0

Trub1, Probable tRNA pseudouridine synthase 1, mousemouse

Known RBP Predictions only

Length 338 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trub1Q8C0D0 Ihh-201ENSMUST00000164097 2468 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
Trub1Q8C0D0 Lipt2-201ENSMUST00000032967 1663 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
Trub1Q8C0D0 Tmem55b-209ENSMUST00000162957 1465 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
Trub1Q8C0D0 Eif5a-208ENSMUST00000108611 1353 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
Trub1Q8C0D0 Zfp346-203ENSMUST00000159278 1253 ntAPPRIS ALT2 TSL 5 BASIC21.91■■□□□ 1.1
Trub1Q8C0D0 Fam89b-203ENSMUST00000161368 1160 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
Trub1Q8C0D0 Gm20431-201ENSMUST00000125544 2367 ntAPPRIS P1 TSL 5 BASIC21.91■■□□□ 1.1
Trub1Q8C0D0 Txnrd2-213ENSMUST00000178093 1785 ntTSL 5 BASIC21.91■■□□□ 1.1
Trub1Q8C0D0 Auh-204ENSMUST00000120535 1647 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
Trub1Q8C0D0 Whrn-208ENSMUST00000119294 2632 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
Trub1Q8C0D0 Psip1-202ENSMUST00000107214 1973 ntTSL 5 BASIC21.9■■□□□ 1.1
Trub1Q8C0D0 Gm2415-201ENSMUST00000128982 1474 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
Trub1Q8C0D0 Sin3b-202ENSMUST00000109950 1024 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
Trub1Q8C0D0 Neurl1b-202ENSMUST00000182897 1231 ntTSL 5 BASIC21.9■■□□□ 1.1
Trub1Q8C0D0 Nsd1-203ENSMUST00000224156 1149 ntBASIC21.9■■□□□ 1.1
Trub1Q8C0D0 Fastk-202ENSMUST00000115041 1399 ntAPPRIS ALT2 TSL 5 BASIC21.89■■□□□ 1.1
Trub1Q8C0D0 Nudt6-204ENSMUST00000108118 935 ntTSL 5 BASIC21.89■■□□□ 1.09
Trub1Q8C0D0 Vax1-201ENSMUST00000172821 1044 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
Trub1Q8C0D0 Nudt6-201ENSMUST00000052645 1155 ntAPPRIS ALT2 TSL 1 (best) BASIC21.89■■□□□ 1.09
Trub1Q8C0D0 Bloc1s2-201ENSMUST00000079033 878 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
Trub1Q8C0D0 Nudt6-202ENSMUST00000099130 1070 ntAPPRIS P3 TSL 1 (best) BASIC21.89■■□□□ 1.09
Trub1Q8C0D0 Slc35b3-209ENSMUST00000225432 2216 ntAPPRIS P3 BASIC21.89■■□□□ 1.09
Trub1Q8C0D0 Taf4-201ENSMUST00000041618 4416 ntAPPRIS P2 TSL 1 (best) BASIC21.89■■□□□ 1.09
Trub1Q8C0D0 Kcnip1-203ENSMUST00000109340 1840 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
Trub1Q8C0D0 Shisa5-201ENSMUST00000026737 1834 ntAPPRIS P3 TSL 1 (best) BASIC21.89■■□□□ 1.09
Trub1Q8C0D0 Gm26796-201ENSMUST00000181092 2276 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
Trub1Q8C0D0 Kctd20-201ENSMUST00000057174 2368 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
Trub1Q8C0D0 Slc39a13-203ENSMUST00000111436 1291 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
Trub1Q8C0D0 Gm2415-202ENSMUST00000134688 401 ntTSL 2 BASIC21.88■■□□□ 1.09
Trub1Q8C0D0 Gm28417-202ENSMUST00000185881 538 ntTSL 3 BASIC21.88■■□□□ 1.09
Trub1Q8C0D0 AC166358.2-201ENSMUST00000223403 734 ntTSL 5 BASIC21.88■■□□□ 1.09
Trub1Q8C0D0 Irak1-202ENSMUST00000068286 2537 ntAPPRIS P3 TSL 1 (best) BASIC21.88■■□□□ 1.09
Trub1Q8C0D0 Ubl4a-206ENSMUST00000155676 2442 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
Trub1Q8C0D0 Smarcc1-201ENSMUST00000088716 5717 ntAPPRIS P2 TSL 1 (best) BASIC21.88■■□□□ 1.09
Trub1Q8C0D0 Arhgef26-201ENSMUST00000079300 5638 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
Trub1Q8C0D0 Fn1-208ENSMUST00000186940 1350 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
Trub1Q8C0D0 Dexi-201ENSMUST00000038281 1389 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
Trub1Q8C0D0 AC158990.1-201ENSMUST00000221450 2016 ntBASIC21.87■■□□□ 1.09
Trub1Q8C0D0 Papola-211ENSMUST00000166735 1033 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
Trub1Q8C0D0 AC158592.1-201ENSMUST00000215560 1113 ntTSL 5 BASIC21.87■■□□□ 1.09
Trub1Q8C0D0 Smurf2-202ENSMUST00000103067 5290 ntTSL 5 BASIC21.87■■□□□ 1.09
Trub1Q8C0D0 Sugct-201ENSMUST00000068545 1701 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
Trub1Q8C0D0 Pdss1-207ENSMUST00000152170 1538 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
Trub1Q8C0D0 Kti12-201ENSMUST00000102738 1629 ntAPPRIS P1 BASIC21.86■■□□□ 1.09
Trub1Q8C0D0 Phf2-201ENSMUST00000035540 5494 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
Trub1Q8C0D0 Best2-202ENSMUST00000209322 1944 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
Trub1Q8C0D0 Nkx2-5-201ENSMUST00000015723 1525 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
Trub1Q8C0D0 Mad2l2-201ENSMUST00000030860 1535 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
Trub1Q8C0D0 Gm28536-201ENSMUST00000190971 1317 ntBASIC21.85■■□□□ 1.09
Trub1Q8C0D0 1700051O22Rik-202ENSMUST00000195451 638 ntBASIC21.85■■□□□ 1.09
Trub1Q8C0D0 Vegfb-201ENSMUST00000025914 1281 ntAPPRIS P3 TSL 1 (best) BASIC21.85■■□□□ 1.09
Trub1Q8C0D0 Msx3-202ENSMUST00000172775 2070 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
Trub1Q8C0D0 Olig3-201ENSMUST00000053225 2072 ntAPPRIS P1 BASIC21.84■■□□□ 1.09
Trub1Q8C0D0 Rnf187-201ENSMUST00000094151 1949 ntAPPRIS ALT2 TSL 1 (best) BASIC21.84■■□□□ 1.09
Trub1Q8C0D0 Fastk-201ENSMUST00000030800 1893 ntAPPRIS P2 TSL 1 (best) BASIC21.84■■□□□ 1.09
Trub1Q8C0D0 Tmx4-202ENSMUST00000110119 596 ntTSL 2 BASIC21.84■■□□□ 1.09
Trub1Q8C0D0 Gm45444-201ENSMUST00000211394 898 ntBASIC21.84■■□□□ 1.09
Trub1Q8C0D0 4833418N17Rik-201ENSMUST00000064826 615 ntBASIC21.84■■□□□ 1.09
Trub1Q8C0D0 Aurkb-202ENSMUST00000108666 1831 ntAPPRIS P1 TSL 5 BASIC21.84■■□□□ 1.09
Trub1Q8C0D0 Pstpip1-201ENSMUST00000059206 1863 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
Trub1Q8C0D0 Homer2-201ENSMUST00000026922 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC21.83■■□□□ 1.09
Trub1Q8C0D0 Emc6-201ENSMUST00000054952 1332 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
Trub1Q8C0D0 Sult4a1-201ENSMUST00000082365 2383 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
Trub1Q8C0D0 Wipi1-203ENSMUST00000106689 1220 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
Trub1Q8C0D0 Tmem192-203ENSMUST00000209852 1193 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
Trub1Q8C0D0 Ak2-201ENSMUST00000030583 986 ntAPPRIS P4 TSL 1 (best) BASIC21.83■■□□□ 1.09
Trub1Q8C0D0 Coprs-201ENSMUST00000033839 793 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
Trub1Q8C0D0 Msto1-201ENSMUST00000107494 2093 ntTSL 1 (best) BASIC21.83■■□□□ 1.08
Trub1Q8C0D0 Sox2-201ENSMUST00000099151 2057 ntAPPRIS P1 BASIC21.83■■□□□ 1.08
Trub1Q8C0D0 Barhl1-202ENSMUST00000113847 2160 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Trub1Q8C0D0 Dus1l-209ENSMUST00000167023 1909 ntAPPRIS P2 TSL 1 (best) BASIC21.82■■□□□ 1.08
Trub1Q8C0D0 Dus1l-201ENSMUST00000026151 1930 ntAPPRIS ALT2 TSL 5 BASIC21.82■■□□□ 1.08
Trub1Q8C0D0 2010300C02Rik-203ENSMUST00000162875 4634 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Trub1Q8C0D0 Tmem45b-201ENSMUST00000048050 1799 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Trub1Q8C0D0 Gpr160-202ENSMUST00000108258 2139 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Trub1Q8C0D0 Rgs6-202ENSMUST00000161801 2141 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
Trub1Q8C0D0 Raph1-201ENSMUST00000027168 2241 ntAPPRIS ALT2 TSL 5 BASIC21.82■■□□□ 1.08
Trub1Q8C0D0 Acsl6-209ENSMUST00000108904 2594 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
Trub1Q8C0D0 Cdc16-201ENSMUST00000043962 2301 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Trub1Q8C0D0 Rab28-201ENSMUST00000031011 1635 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Trub1Q8C0D0 Gm12905-201ENSMUST00000153814 658 ntTSL 2 BASIC21.82■■□□□ 1.08
Trub1Q8C0D0 Tmem160-201ENSMUST00000019302 815 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Trub1Q8C0D0 Gm7544-201ENSMUST00000222426 828 ntAPPRIS P1 BASIC21.82■■□□□ 1.08
Trub1Q8C0D0 Stk19-201ENSMUST00000077477 1120 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Trub1Q8C0D0 BC037034-205ENSMUST00000159649 2093 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
Trub1Q8C0D0 Klf15-201ENSMUST00000032174 2373 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Trub1Q8C0D0 Tmem74b-201ENSMUST00000060196 1435 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Trub1Q8C0D0 Gm11847-201ENSMUST00000125165 1119 ntBASIC21.81■■□□□ 1.08
Trub1Q8C0D0 Pan3-209ENSMUST00000176600 5541 ntAPPRIS ALT2 TSL 5 BASIC21.81■■□□□ 1.08
Trub1Q8C0D0 Gm5921-201ENSMUST00000075898 882 ntBASIC21.81■■□□□ 1.08
Trub1Q8C0D0 Hnrnpa3-201ENSMUST00000090792 1140 ntAPPRIS P3 TSL 5 BASIC21.81■■□□□ 1.08
Trub1Q8C0D0 Gimap1-201ENSMUST00000054368 1493 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Trub1Q8C0D0 Cadps-203ENSMUST00000112658 5458 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
Trub1Q8C0D0 Rtca-201ENSMUST00000000348 1594 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Trub1Q8C0D0 Kcnc3-202ENSMUST00000107907 5281 ntAPPRIS P2 TSL 5 BASIC21.81■■□□□ 1.08
Trub1Q8C0D0 Bpifb4-202ENSMUST00000109757 2420 ntAPPRIS P2 TSL 5 BASIC21.8■■□□□ 1.08
Trub1Q8C0D0 Slc9a7-202ENSMUST00000115393 2152 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
Trub1Q8C0D0 Gm43403-201ENSMUST00000198011 1786 ntBASIC21.8■■□□□ 1.08
Trub1Q8C0D0 Gm13238-201ENSMUST00000117655 780 ntBASIC21.8■■□□□ 1.08
Trub1Q8C0D0 Rin3-207ENSMUST00000150795 937 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
Retrieved 100 of 76,532 protein–RNA pairs in 30.4 ms