Protein–RNA interactions for Protein: Q6Q899

Ddx58, Probable ATP-dependent RNA helicase DDX58, mousemouse

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx58Q6Q899 AC161180.2-201ENSMUST00000222567 1015 ntAPPRIS P1 BASIC26.42■■□□□ 1.82
Ddx58Q6Q899 Psip1-202ENSMUST00000107214 1973 ntTSL 5 BASIC26.41■■□□□ 1.82
Ddx58Q6Q899 Ndufs2-201ENSMUST00000013737 1623 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
Ddx58Q6Q899 Gm16253-201ENSMUST00000148290 550 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
Ddx58Q6Q899 Yjefn3-202ENSMUST00000152938 785 ntAPPRIS P1 TSL 5 BASIC26.41■■□□□ 1.82
Ddx58Q6Q899 Svbp-201ENSMUST00000030395 733 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
Ddx58Q6Q899 Ctdspl-201ENSMUST00000073109 4589 ntAPPRIS P2 TSL 1 (best) BASIC26.41■■□□□ 1.82
Ddx58Q6Q899 Tmem230-202ENSMUST00000110163 1551 ntAPPRIS P1 TSL 3 BASIC26.41■■□□□ 1.82
Ddx58Q6Q899 Letm2-209ENSMUST00000210810 1538 ntTSL 1 (best) BASIC26.4■■□□□ 1.82
Ddx58Q6Q899 Efna3-201ENSMUST00000029673 2363 ntAPPRIS P2 TSL 1 (best) BASIC26.4■■□□□ 1.82
Ddx58Q6Q899 Ostc-201ENSMUST00000043937 1067 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
Ddx58Q6Q899 Pbx1-201ENSMUST00000064438 1020 ntTSL 1 (best) BASIC26.4■■□□□ 1.82
Ddx58Q6Q899 Arx-202ENSMUST00000113947 2454 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.82
Ddx58Q6Q899 Clta-204ENSMUST00000107849 1099 ntAPPRIS ALT2 TSL 1 (best) BASIC26.39■■□□□ 1.82
Ddx58Q6Q899 D130020L05Rik-203ENSMUST00000221044 803 ntTSL 2 BASIC26.39■■□□□ 1.82
Ddx58Q6Q899 Ssr2-201ENSMUST00000035785 1189 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.82
Ddx58Q6Q899 Homer2-201ENSMUST00000026922 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC26.39■■□□□ 1.81
Ddx58Q6Q899 March2-210ENSMUST00000186022 2470 ntTSL 1 (best) BASIC26.39■■□□□ 1.81
Ddx58Q6Q899 Smim19-202ENSMUST00000163774 1435 ntTSL 1 (best) BASIC26.39■■□□□ 1.81
Ddx58Q6Q899 Qk-202ENSMUST00000097414 4658 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
Ddx58Q6Q899 Nle1-201ENSMUST00000103213 1783 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
Ddx58Q6Q899 Eif2b3-203ENSMUST00000106448 1555 ntAPPRIS P1 TSL 5 BASIC26.38■■□□□ 1.81
Ddx58Q6Q899 Snrpa1-206ENSMUST00000153609 1248 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
Ddx58Q6Q899 Ankrd13c-202ENSMUST00000164582 1735 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
Ddx58Q6Q899 Alkal2-201ENSMUST00000067087 1509 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
Ddx58Q6Q899 Git2-214ENSMUST00000155908 2338 ntTSL 5 BASIC26.38■■□□□ 1.81
Ddx58Q6Q899 Porcn-203ENSMUST00000089402 1839 ntAPPRIS ALT1 TSL 1 (best) BASIC26.37■■□□□ 1.81
Ddx58Q6Q899 Hebp2-202ENSMUST00000213153 968 ntTSL 1 (best) BASIC26.37■■□□□ 1.81
Ddx58Q6Q899 AC122379.1-201ENSMUST00000220658 355 ntTSL 3 BASIC26.37■■□□□ 1.81
Ddx58Q6Q899 Xbp1-201ENSMUST00000063084 2129 ntAPPRIS P2 TSL 1 (best) BASIC26.37■■□□□ 1.81
Ddx58Q6Q899 Rbm34-203ENSMUST00000212618 1509 ntTSL 1 (best) BASIC26.37■■□□□ 1.81
Ddx58Q6Q899 1810010H24Rik-202ENSMUST00000140447 1677 ntAPPRIS ALT2 TSL 5 BASIC26.37■■□□□ 1.81
Ddx58Q6Q899 Tead2-202ENSMUST00000097216 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC26.37■■□□□ 1.81
Ddx58Q6Q899 Ooep-201ENSMUST00000034900 2138 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
Ddx58Q6Q899 Ankra2-202ENSMUST00000091356 1949 ntTSL 1 (best) BASIC26.36■■□□□ 1.81
Ddx58Q6Q899 Mef2a-203ENSMUST00000076325 2664 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
Ddx58Q6Q899 Clta-205ENSMUST00000107851 1135 ntAPPRIS P4 TSL 2 BASIC26.35■■□□□ 1.81
Ddx58Q6Q899 Zfp346-202ENSMUST00000159147 1146 ntTSL 5 BASIC26.35■■□□□ 1.81
Ddx58Q6Q899 A730098A19Rik-201ENSMUST00000188193 978 ntTSL 1 (best) BASIC26.35■■□□□ 1.81
Ddx58Q6Q899 Ankrd11-207ENSMUST00000212937 943 ntTSL 1 (best) BASIC26.35■■□□□ 1.81
Ddx58Q6Q899 Olfm1-201ENSMUST00000028177 2757 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
Ddx58Q6Q899 Timmdc1-201ENSMUST00000002925 1573 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
Ddx58Q6Q899 Ccdc88a-202ENSMUST00000109477 1716 ntTSL 2 BASIC26.34■■□□□ 1.81
Ddx58Q6Q899 Grb2-201ENSMUST00000021090 2709 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
Ddx58Q6Q899 Tpm1-211ENSMUST00000113695 1607 ntTSL 3 BASIC26.34■■□□□ 1.81
Ddx58Q6Q899 Pax1-201ENSMUST00000109968 2643 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
Ddx58Q6Q899 Snrpb-201ENSMUST00000103199 1161 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
Ddx58Q6Q899 Tcte2-201ENSMUST00000053376 1105 ntAPPRIS ALT2 TSL 1 (best) BASIC26.33■■□□□ 1.81
Ddx58Q6Q899 Hoxa11-201ENSMUST00000048026 2287 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
Ddx58Q6Q899 Kansl1l-202ENSMUST00000113987 2342 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
Ddx58Q6Q899 Gm9780-202ENSMUST00000184915 1394 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.8
Ddx58Q6Q899 Tsc22d1-204ENSMUST00000110888 4999 ntTSL 1 (best) BASIC26.33■■□□□ 1.8
Ddx58Q6Q899 Ccsap-202ENSMUST00000122421 2673 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
Ddx58Q6Q899 Zc3h8-201ENSMUST00000028866 1624 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
Ddx58Q6Q899 E130311K13Rik-201ENSMUST00000061706 1640 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
Ddx58Q6Q899 Marc1-201ENSMUST00000048462 2039 ntAPPRIS P2 TSL 1 (best) BASIC26.31■■□□□ 1.8
Ddx58Q6Q899 Ildr2-203ENSMUST00000192638 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC26.31■■□□□ 1.8
Ddx58Q6Q899 2900079G21Rik-201ENSMUST00000139552 1139 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
Ddx58Q6Q899 Hoxb7-201ENSMUST00000049352 1291 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
Ddx58Q6Q899 Gm9847-201ENSMUST00000052528 599 ntBASIC26.31■■□□□ 1.8
Ddx58Q6Q899 Apaf1-205ENSMUST00000160788 1596 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
Ddx58Q6Q899 Tinagl1-203ENSMUST00000105999 1952 ntAPPRIS P2 TSL 1 (best) BASIC26.31■■□□□ 1.8
Ddx58Q6Q899 Krt72-201ENSMUST00000071104 1951 ntAPPRIS P1 TSL 2 BASIC26.31■■□□□ 1.8
Ddx58Q6Q899 Tarbp2-201ENSMUST00000023813 1523 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
Ddx58Q6Q899 Sh3rf3-202ENSMUST00000135526 1940 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
Ddx58Q6Q899 Peli3-201ENSMUST00000025834 1971 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
Ddx58Q6Q899 Pawr-202ENSMUST00000218332 870 ntAPPRIS ALT2 TSL 1 (best) BASIC26.3■■□□□ 1.8
Ddx58Q6Q899 8430432A02Rik-201ENSMUST00000039080 1248 ntBASIC26.3■■□□□ 1.8
Ddx58Q6Q899 Gm13241-201ENSMUST00000094493 780 ntBASIC26.3■■□□□ 1.8
Ddx58Q6Q899 Kcnq5-205ENSMUST00000173058 2472 ntTSL 5 BASIC26.3■■□□□ 1.8
Ddx58Q6Q899 Lrrfip2-205ENSMUST00000196981 1839 ntAPPRIS ALT2 TSL 5 BASIC26.3■■□□□ 1.8
Ddx58Q6Q899 Txnrd2-212ENSMUST00000177856 1878 ntAPPRIS ALT2 TSL 5 BASIC26.3■■□□□ 1.8
Ddx58Q6Q899 Fam220a-205ENSMUST00000169329 2331 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
Ddx58Q6Q899 Cadm1-202ENSMUST00000085909 2126 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
Ddx58Q6Q899 Msl2-202ENSMUST00000189616 2612 ntTSL 5 BASIC26.29■■□□□ 1.8
Ddx58Q6Q899 Adssl1-201ENSMUST00000021726 1777 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
Ddx58Q6Q899 Gm12922-201ENSMUST00000120626 809 ntBASIC26.29■■□□□ 1.8
Ddx58Q6Q899 Polr1d-201ENSMUST00000050970 1196 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
Ddx58Q6Q899 Chml-203ENSMUST00000210367 1324 ntTSL 5 BASIC26.29■■□□□ 1.8
Ddx58Q6Q899 Fam118b-201ENSMUST00000059057 1860 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
Ddx58Q6Q899 Mad2l2-201ENSMUST00000030860 1535 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
Ddx58Q6Q899 Antxr1-204ENSMUST00000204805 2156 ntAPPRIS ALT2 TSL 5 BASIC26.29■■□□□ 1.8
Ddx58Q6Q899 Rcor3-206ENSMUST00000192491 1623 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
Ddx58Q6Q899 Tpm1-206ENSMUST00000113686 998 ntTSL 5 BASIC26.28■■□□□ 1.8
Ddx58Q6Q899 Endod1-203ENSMUST00000214236 419 ntAPPRIS ALT2 TSL 3 BASIC26.28■■□□□ 1.8
Ddx58Q6Q899 Agap3-201ENSMUST00000024123 3207 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
Ddx58Q6Q899 Dennd5a-202ENSMUST00000106722 4862 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
Ddx58Q6Q899 Ccdc74a-201ENSMUST00000056962 1273 ntAPPRIS P1 TSL 5 BASIC26.27■■□□□ 1.8
Ddx58Q6Q899 Srm-201ENSMUST00000006611 1338 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
Ddx58Q6Q899 Cdr2-201ENSMUST00000033169 2525 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
Ddx58Q6Q899 Phf23-202ENSMUST00000101526 1706 ntAPPRIS ALT2 TSL 1 (best) BASIC26.26■■□□□ 1.79
Ddx58Q6Q899 Btbd19-209ENSMUST00000183310 1620 ntAPPRIS P1 TSL 5 BASIC26.26■■□□□ 1.79
Ddx58Q6Q899 Fndc4-201ENSMUST00000041266 1375 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
Ddx58Q6Q899 Ispd-204ENSMUST00000221452 1924 ntAPPRIS ALT2 TSL 1 (best) BASIC26.26■■□□□ 1.79
Ddx58Q6Q899 Dnpep-201ENSMUST00000066668 2488 ntAPPRIS P3 TSL 1 (best) BASIC26.25■■□□□ 1.79
Ddx58Q6Q899 0610010K14Rik-209ENSMUST00000108579 667 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
Ddx58Q6Q899 5930403N24Rik-204ENSMUST00000217338 337 ntTSL 2 BASIC26.25■■□□□ 1.79
Ddx58Q6Q899 Gtf2e2-202ENSMUST00000170705 1634 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
Ddx58Q6Q899 Luc7l3-203ENSMUST00000107821 2050 ntAPPRIS P1 TSL 5 BASIC26.24■■□□□ 1.79
Ddx58Q6Q899 Llph-202ENSMUST00000130198 1463 ntAPPRIS P1 TSL 3 BASIC26.24■■□□□ 1.79
Retrieved 100 of 76,532 protein–RNA pairs in 30.6 ms